BAC Information

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BAC

Clone NameB6Ng01-208N23
Chromosome5 (Build37)
Map Location 80,330,775 - 80,432,293
singlet/doubletdoublet
Overlap genenone
Upstream genenone
Downstream geneLOC100039506, LOC100039384
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-208N23.bB6Ng01-208N23.g
ACCGA027637GA027638
length1,138793
definitionB6Ng01-208N23.b B6Ng01-208N23.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(80,431,159 - 80,432,293)(80,330,775 - 80,331,567)
sequence
gaattcctgaggcaattcatagatacacccacatatttttatctgtgcat
ctttctagtccagctgaaaactttgataacccattgtgtagtctacatat
ctctatatttctatatctctatatctacatatttacttgtgtatttccct
cagattgcaaatctgttccagaatccctaacaaaacatagtgaaatgttt
ctgtaattttatattcttgtatttaatggcagtagtagaccaatttatag
atatgtaatcattcattcatatttatatatttggtttgtgtcagttttct
ttgatgagcattacagttggaaaaaactcccacttcaatcaaccacaaca
ttggcaatgtactggaagtgtatactttggaagccaagaatatgtttaaa
aagagtatttgtggtgaatatcacagaaactaatattatcaattcagtta
acatatggcacactttatattcatccaaaatgtcctttaatctagcaaat
tattactcttttgccacagcacaatcaggatcctaccatgtgtggcaaag
aatgtttcccaagacctctgcagttctaagactcccttggacttaaaatt
tgacttcgctatctcatagatgtgttttcatattctcattttaaaacaca
caaatcaaagaatcttgagtgtccctttattttccttaataatactggca
cattggttttgattagtcctttctaaaattgtagaatgtcacagggccca
taatttgttgcctgactgcttactggaaaatatttatgttggttacatat
aaccagcatatagcaagtttagttgactctgttggtcttcttgtggtgtc
cttgatccctactacttgctcacgtctatccccctactacttgcacgcat
ctatcccccagtcttccataggactttgcaggctctacctaaagtttggc
tgtgggactctgcatctgtgtccatcagctgctggatgaagcctctcaga
gacagttatgcaagttcctgtatgcaagcatagcagagtatcattagtag
tcacaggtgggttcttcacatagggggtggagtatcattggggcagaaca
ctaaatcttgctgtttctcagtctctctacttcatttt

gaattctttagattgataacagttactagcaaaggtaaccactcttctgg
atcccaggtacatcagcttcatctgtgtcaacagcatatagaatattttc
tatgatttcacattaagtctctttttaatacctcatatgtttttttgttt
ccctttttctttttctaactaatatgtactgtttaatgttttttaaataa
cagttaagttcatgaacatttattgaagtttatatttttctcactggtca
tatttttctcactaaattccatcaacatcttataaatcaaaagaaataaa
ctttctctactattctgttttgagttttgtctatcttgtctataaagagt
aacttaaattcacagacttgaactttttgtgaatttatcagattcttcta
actagaatgtttatattcccaaattattattcatcaaatgaaatacattt
ttgtaagcatgcacatgtacacctgagggcatgggaaaataaatgataga
aggaaggaaggaaggaaggaaagagagagagagaaagaaagagaaagaaa
gaaaagaaaagaaagaaagaaagaaagaaagaaagagagaaagaaagaaa
ttaagaggatagtaaagtatttaaaataatagtattatatagaaaatagt
ttccagtttctagtatttatatggaaaaattgaaagacttaaattttatt
atttcagtttcatcaagtgatattttaaattttctttaaatttttgtttg
tggggctgtacagtatgtgtgtatgtgtgtgtgtgtgtgtgtg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr5_80431159_80432293
seq2: B6Ng01-208N23.b_43_1180 (reverse)

seq1  AAAATGAAGT--AGAGACTGAGGAAACAGC-AGA-TTAGTG-TCTGCCCC  45
      ||||||||||  ||||||||| |||||||| ||| |||||| ||||||||
seq2  AAAATGAAGTAGAGAGACTGA-GAAACAGCAAGATTTAGTGTTCTGCCCC  49

seq1  AAATTGATACT---CACCCTATGTGAAGAACCAACCTGTGACTACTAATG  92
      ||  |||||||   | |||||||||||||||| |||||||||||||||||
seq2  AA--TGATACTCCACCCCCTATGTGAAGAACCCACCTGTGACTACTAATG  97

seq1  ATACTCTGCTATGCTTGCATACAGGAACTTTGCATAACTGTCTCCTGAGA  142
      |||||||||||||||||||||||||||| |||||||||||||| ||||||
seq2  ATACTCTGCTATGCTTGCATACAGGAAC-TTGCATAACTGTCT-CTGAGA  145

seq1  GGCTTCATCCAGCAGCTGATGGACACAGATGCAGAGTCCCACAGCCAAAC  192
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCTTCATCCAGCAGCTGATGGACACAGATGCAGAGTCCCACAGCCAAAC  195

seq1  TTTAGGTAGAGCCTGCAAAGTCCTATGGAAGACTGGGGGATAGATGCGTG  242
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTAGGTAGAGCCTGCAAAGTCCTATGGAAGACTGGGGGATAGATGCGTG  245

seq1  CAAGTAGTAGGGGGATAGACGTGAGCAAGTAGTAGGGATCAAGGACACCA  292
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAGTAGTAGGGGGATAGACGTGAGCAAGTAGTAGGGATCAAGGACACCA  295

seq1  CAAGAAGACCAACAGAGTCAACTAAACTTGCTATATGCTGGTTATATGTA  342
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAGAAGACCAACAGAGTCAACTAAACTTGCTATATGCTGGTTATATGTA  345

seq1  ACCAACATAAATATTTTCCAGTAAGCAGTCAGGCAACAAATTATGGGCCC  392
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCAACATAAATATTTTCCAGTAAGCAGTCAGGCAACAAATTATGGGCCC  395

seq1  TGTGACATTCTACAATTTTAGAAAGGACTAATCAAAACCAATGTGCCAGT  442
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGACATTCTACAATTTTAGAAAGGACTAATCAAAACCAATGTGCCAGT  445

seq1  ATTATTAAGGAAAATAAAGGGACACTCAAGATTCTTTGATTTGTGTGTTT  492
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTATTAAGGAAAATAAAGGGACACTCAAGATTCTTTGATTTGTGTGTTT  495

seq1  TAAAATGAGAATATGAAAACACATCTATGAGATAGCGAAGTCAAATTTTA  542
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAAATGAGAATATGAAAACACATCTATGAGATAGCGAAGTCAAATTTTA  545

seq1  AGTCCAAGGGAGTCTTAGAACTGCAGAGGTCTTGGGAAACATTCTTTGCC  592
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTCCAAGGGAGTCTTAGAACTGCAGAGGTCTTGGGAAACATTCTTTGCC  595

seq1  ACACATGGTAGGATCCTGATTGTGCTGTGGCAAAAGAGTAATAATTTGCT  642
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACATGGTAGGATCCTGATTGTGCTGTGGCAAAAGAGTAATAATTTGCT  645

seq1  AGATTAAAGGACATTTTGGATGAATATAAAGTGTGCCATATGTTAACTGA  692
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATTAAAGGACATTTTGGATGAATATAAAGTGTGCCATATGTTAACTGA  695

seq1  ATTGATAATATTAGTTTCTGTGATATTCACCACAAATACTCTTTTTAAAC  742
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTGATAATATTAGTTTCTGTGATATTCACCACAAATACTCTTTTTAAAC  745

seq1  ATATTCTTGGCTTCCAAAGTATACACTTCCAGTACATTGCCAATGTTGTG  792
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATTCTTGGCTTCCAAAGTATACACTTCCAGTACATTGCCAATGTTGTG  795

seq1  GTTGATTGAAGTGGGAGTTTTTTCCAACTGTAATGCTCATCAAAGAAAAC  842
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTGATTGAAGTGGGAGTTTTTTCCAACTGTAATGCTCATCAAAGAAAAC  845

seq1  TGACACAAACCAAATATATAAATATGAATGAATGATTACATATCTATAAA  892
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGACACAAACCAAATATATAAATATGAATGAATGATTACATATCTATAAA  895

seq1  TTGGTCTACTACTGCCATTAAATACAAGAATATAAAATTACAGAAACATT  942
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGGTCTACTACTGCCATTAAATACAAGAATATAAAATTACAGAAACATT  945

seq1  TCACTATGTTTTGTTAGGGATTCTGGAACAGATTTGCAATCTGAGGGAAA  992
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCACTATGTTTTGTTAGGGATTCTGGAACAGATTTGCAATCTGAGGGAAA  995

seq1  TACACAAGTAAATATGTAGATATAGAGATATAGAAATATAGAGATATGTA  1042
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACACAAGTAAATATGTAGATATAGAGATATAGAAATATAGAGATATGTA  1045

seq1  GACTACACAATGGGTTATCAAAGTTTTCAGCTGGACTAGAAAGATGCACA  1092
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACTACACAATGGGTTATCAAAGTTTTCAGCTGGACTAGAAAGATGCACA  1095

seq1  GATAAAAATATGTGGGTGTATCTATGAATTGCCTCAGGAATTC  1135
      |||||||||||||||||||||||||||||||||||||||||||
seq2  GATAAAAATATGTGGGTGTATCTATGAATTGCCTCAGGAATTC  1138


seq1: chr5_80330775_80331567
seq2: B6Ng01-208N23.g_67_859

seq1  GAATTCTTTAGATTGATAACAGTTACTAGCAAAGGTAACCACTCTTCTGG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTTTAGATTGATAACAGTTACTAGCAAAGGTAACCACTCTTCTGG  50

seq1  ATCCCAGGTACATCAGCTTCATCTGTGTCAACAGCATATAGAATATTTTC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCCCAGGTACATCAGCTTCATCTGTGTCAACAGCATATAGAATATTTTC  100

seq1  TATGATTTCACATTAAGTCTCTTTTTAATACCTCATATGTTTTTTTGTTT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATGATTTCACATTAAGTCTCTTTTTAATACCTCATATGTTTTTTTGTTT  150

seq1  CCCTTTTTCTTTTTCTAACTAATATGTACTGTTTAATGTTTTTTAAATAA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCTTTTTCTTTTTCTAACTAATATGTACTGTTTAATGTTTTTTAAATAA  200

seq1  CAGTTAAGTTCATGAACATTTATTGAAGTTTATATTTTTCTCACTGGTCA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGTTAAGTTCATGAACATTTATTGAAGTTTATATTTTTCTCACTGGTCA  250

seq1  TATTTTTCTCACTAAATTCCATCAACATCTTATAAATCAAAAGAAATAAA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTTTTCTCACTAAATTCCATCAACATCTTATAAATCAAAAGAAATAAA  300

seq1  CTTTCTCTACTATTCTGTTTTGAGTTTTGTCTATCTTGTCTATAAAGAGT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTCTCTACTATTCTGTTTTGAGTTTTGTCTATCTTGTCTATAAAGAGT  350

seq1  AACTTAAATTCACAGACTTGAACTTTTTGTGAATTTATCAGATTCTTCTA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTTAAATTCACAGACTTGAACTTTTTGTGAATTTATCAGATTCTTCTA  400

seq1  ACTAGAATGTTTATATTCCCAAATTATTATTCATCAAATGAAATACATTT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTAGAATGTTTATATTCCCAAATTATTATTCATCAAATGAAATACATTT  450

seq1  TTGTAAGCATGCACATGTACACCTGAGGGCATGGGAAAATAAATGATAGA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTAAGCATGCACATGTACACCTGAGGGCATGGGAAAATAAATGATAGA  500

seq1  AGGAAGGAAGGAAGGAAGGAAAGAGAGAGAGAGAAAGAAAGAGAAAGAAA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGAAGGAAGGAAGGAAGGAAAGAGAGAGAGAGAAAGAAAGAGAAAGAAA  550

seq1  GAAAAGAAAAGAAAGAAAGAAAGAAAGAAAGAAAGAGAGAAAGAAAGAAA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAAAGAAAAGAAAGAAAGAAAGAAAGAAAGAAAGAGAGAAAGAAAGAAA  600

seq1  TTAAGAGGATAGTAAAGTATTTAAAATAATAGTATTATATAGAAAATAGT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAAGAGGATAGTAAAGTATTTAAAATAATAGTATTATATAGAAAATAGT  650

seq1  TTCCAGTTTCTAGTATTTATATGGAAAAATTGAAAGACTTAAATTTTATT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCAGTTTCTAGTATTTATATGGAAAAATTGAAAGACTTAAATTTTATT  700

seq1  ATTTCAGTTTCATCAAGTGATATTTTAAATTTTCTTTAAATTTTTGTTTG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTCAGTTTCATCAAGTGATATTTTAAATTTTCTTTAAATTTTTGTTTG  750

seq1  TGGGGCTGTACAGTATGTGTGTATGTGTGTGTGTGTGTGTGTG  793
      |||||||||||||||||||||||||||||||||||||||||||
seq2  TGGGGCTGTACAGTATGTGTGTATGTGTGTGTGTGTGTGTGTG  793


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