BAC Information

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BAC

Clone NameB6Ng01-209B12
Chromosome5 (Build37)10 (Build37)
Map Location 4,989,306 - 4,989,61860,726,215 - 60,727,241
singlet/doubletsingletsinglet
Overlap genePftk1
Upstream geneAkap9, Cyp51, ENSMUSG00000053178, LOC100041073, Fzd1, LOC667678
Downstream gene1700015F17Rik, Cldn12, Gtpbp10, LOC667699, EG667705, A330021E22Rik, Steap2, Steap1, LOC727711, LOC546854
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-209B12.bB6Ng01-209B12.g
ACCGA027802GA027803
length4251,034
definitionB6Ng01-209B12.b B6Ng01-209B12.g
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(4,989,306 - 4,989,618)(60,726,215 - 60,727,241)
sequence
aaacctgattagattatattaaaggtgggcttatcgggaagctactctca
aggagggttcactggccccaaggattgaggccaagggagttgccaaagga
ggagagggaagagaaagaaagggcatgtgaggaagggggcaggggtctga
attatagagagggagggaaggccagagaggtttggattattcagggaaga
gcctctgggctcaaaagttcagggttgggagcagggtatgccagataggg
actgagggatgctgggagaacctggaggccaggtctttgatgtgtgaaat
atgcacctcaatcccttgtccccagatcagaaaccaaacaatggggagac
ggtagagctcttgtctagcactgtccaggccccaggtttgatttccccag
gatcaaaagcaaacaaacaaaaaca
gaattccaaaggatcagagccctcttctgatcccctcaggcacatatgtg
gtacaaagacattcataaaggcaaaagacacacatacataaaataaaatt
taaataataataataatagatcattttccccacagcattggccacgggtg
aggggctagcgtgagctatgaggacaaagtggccccagggcagtaacctt
ccgaaagcaccttgtggccagagtgatgttctcacttacagagccctctc
aagccagcatctctatagctcctaccacgtcactgaaaactaagcagacc
acaaggcttgccgtgttctacaacatgcattgagtacatcacagcagtct
actctgagacccgaaaatagagaggagagtagccatggtgactaaaggct
gagaaggcagacagtctcactggagctaaactccactcatgatacggacc
actgatgtctttttttttcttagttggcttccacgttttaaagaagacca
cactatgcagaaggggggcacctcctggatcaggaactttaccaaacacc
tcatttagcacccagccaagccagggagtccccaggacagctgggtggct
ttcagtctccagcatcctgaagctattgccatggctaccatctcactgga
caacactggcctagagtcagccctccagtgaatcctctccttttcctttg
cctgaggagaggctgaggggttgtgggaggagcctgtgcatccccacccg
ctctgagaggacaatccctttgcctatgtgtaccctaggtctctttccat
ccctgagccttggcttcctcagctaggaagggaagagggacccagggcct
cttacagacacagcttcttccaagtcagactagggaccagaagagggcag
ggactgttcttgagctgagacttactacagggaccagcttcagaacacat
gagtagttgtcactgtcacttcgtgaccagccagggaacgagaatgctgt
gtgaacagtgttattagcgtttgtttagggactt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr5_4989306_4989618
seq2: B6Ng01-209B12.b_110_358 (reverse)

seq1  TGCATGTTTCACACATCAAAGCAGACCTGGCCTCCAGGTTCTCCCAGCAT  50
      ||||| |||||||||||||   ||||||||||||||||||||||||||||
seq2  TGCATATTTCACACATCAA---AGACCTGGCCTCCAGGTTCTCCCAGCAT  47

seq1  CACCCTCAGTCCCTACATGG----CCCTGCCCCTAACCCTGAACTTTGCA  96
        |||||||||||||  |||    |||||| || |||||||||||||  |
seq2  --CCCTCAGTCCCTATCTGGCATACCCTGCTCCCAACCCTGAACTTTTGA  95

seq1  GCCCAGGGGCTGGGCTGCCCTTCCTTCAGAGGCTCATCCCTATTAAATCC  146
      |||                       ||||||||| |||||    |||||
seq2  GCC-----------------------CAGAGGCTCTTCCCTGAATAATCC  122

seq1  AGATAT-TTTGGTTTCCTCCCTCTGTCTCTCTGTCTATTTCTGTCTTTGT  195
      | |  | | |||      || ||  || |||| | || ||| | |     
seq2  AAACCTCTCTGG------CCTTCCCTCCCTCTCTATAATTCAGAC-----  161

seq1  CTCTGTCTCTCTGTCTCTGTCTCTCTCTTCTTTCTCTGCACTTGGGCCCT  245
                    | ||| | |      ||| ||   ||| |  |||||
seq2  --------------CCCTGCCCC------CTTCCT---CACAT--GCCCT  186

seq1  TTCTTTTCATCTCCCTCTGCCCCACCCCATGTAGACTTCCTTGCCCTCAA  295
      ||| ||||   |||||||    |  ||  ||   ||| ||||| ||||||
seq2  TTC-TTTCTCTTCCCTCT----CCTCCTTTGGCAACTCCCTTGGCCTCAA  231

seq1  TCCTTGGGGCCAGTGAAC  313
      ||||||||||||||||||
seq2  TCCTTGGGGCCAGTGAAC  249

seq1: chr10_60726215_60727241
seq2: B6Ng01-209B12.g_71_1104

seq1  GAATTCCAAAGGATCAGAGCCCTCTTCTGATCCCCTCAGGCACATATGTG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCAAAGGATCAGAGCCCTCTTCTGATCCCCTCAGGCACATATGTG  50

seq1  GTACAAAGACATTCATAAAGGCAAAAGACACACATACATAAAATAAAATT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTACAAAGACATTCATAAAGGCAAAAGACACACATACATAAAATAAAATT  100

seq1  TAAATAATAATAATAATAGATCATTTTCCCCACAGCATTGGCCACGGGTG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAATAATAATAATAATAGATCATTTTCCCCACAGCATTGGCCACGGGTG  150

seq1  AGGGGCTAGCGTGAGCTATGAGGACAAAGTGGCCCCAGGGCAGTAACCTT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGGGCTAGCGTGAGCTATGAGGACAAAGTGGCCCCAGGGCAGTAACCTT  200

seq1  CCGAAAGCACCTTGTGGCCAGAGTGATGTTCTCACTTACAGAGCCCTCTC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCGAAAGCACCTTGTGGCCAGAGTGATGTTCTCACTTACAGAGCCCTCTC  250

seq1  AAGCCAGCATCTCTATAGCTCCTACCACGTCACTGAAAACTAAGCAGACC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGCCAGCATCTCTATAGCTCCTACCACGTCACTGAAAACTAAGCAGACC  300

seq1  ACAAGGCTTGCCGTGTTCTACAACATGCATTGAGTACATCACAGCAGTCT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAAGGCTTGCCGTGTTCTACAACATGCATTGAGTACATCACAGCAGTCT  350

seq1  ACTCTGAGACCCGAAAATAGAGAGGAGAGTAGCCATGGTGACTAAAGGCT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTCTGAGACCCGAAAATAGAGAGGAGAGTAGCCATGGTGACTAAAGGCT  400

seq1  GAGAAGGCAGACAGTCTCACTGGAGCTAAACTCCACTCATGATACGGACC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGAAGGCAGACAGTCTCACTGGAGCTAAACTCCACTCATGATACGGACC  450

seq1  ACTGATGTCTTTTTTTTTCTTAGTTGGCTTCCACGTTTTAAAGAAGACCA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTGATGTCTTTTTTTTTCTTAGTTGGCTTCCACGTTTTAAAGAAGACCA  500

seq1  CACTATGCAGAAGGGGGGCACCTCCTGGATCAGGAACTTTACCAAACACC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACTATGCAGAAGGGGGGCACCTCCTGGATCAGGAACTTTACCAAACACC  550

seq1  TCATTTAGCACCCAGCCAAGCCAGGGAGTCCCCAGGACAGCTGGGTGGCT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATTTAGCACCCAGCCAAGCCAGGGAGTCCCCAGGACAGCTGGGTGGCT  600

seq1  TTCAGTCTCCAGCATCCTGAAGCTATTGCCATGGCTACCATCTCACTGGA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCAGTCTCCAGCATCCTGAAGCTATTGCCATGGCTACCATCTCACTGGA  650

seq1  CAACACTGGCCTAGAGTCAGCCCTCCAGTGAATCCTCTCCTTTTCCTTTG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAACACTGGCCTAGAGTCAGCCCTCCAGTGAATCCTCTCCTTTTCCTTTG  700

seq1  CCTGAGGAGAGGCTGAGGGGTTGTGGGAGGAGCCTGTGCATCCCCACCCG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGAGGAGAGGCTGAGGGGTTGTGGGAGGAGCCTGTGCATCCCCACCCG  750

seq1  CTCTGAGAGGACAATCCC-TTGCCTATGTGTACCCTAGGTCTCTTTCCAT  799
      |||||||||||||||||| |||||||||||||||||||||||||||||||
seq2  CTCTGAGAGGACAATCCCTTTGCCTATGTGTACCCTAGGTCTCTTTCCAT  800

seq1  CCCTGAGCCTTGGCTTCCTCAGCTAGGAAGGGAAGAGGGACCCAAGGCCT  849
      |||||||||||||||||||||||||||||||||||||||||||| |||||
seq2  CCCTGAGCCTTGGCTTCCTCAGCTAGGAAGGGAAGAGGGACCCAGGGCCT  850

seq1  CTTACAGACACAGCTTC-TCCAAGTCAGACTAAGGACCAGAAGAGGGCAG  898
      ||||||||||||||||| |||||||||||||| |||||||||||||||||
seq2  CTTACAGACACAGCTTCTTCCAAGTCAGACTAGGGACCAGAAGAGGGCAG  900

seq1  GGACTGTTC-TGAGCTGAGACTTACTACAGGGACCAGCTTCAG-ACACAT  946
      ||||||||| ||||||||||||||||||||||||||||||||| ||||||
seq2  GGACTGTTCTTGAGCTGAGACTTACTACAGGGACCAGCTTCAGAACACAT  950

seq1  GAGTAGTTGTCACTGTCAC-TCGTGACCAGCCAGGG-ACGAG-ATGCTGT  993
      ||||||||||||||||||| |||||||||||||||| ||||| |||||||
seq2  GAGTAGTTGTCACTGTCACTTCGTGACCAGCCAGGGAACGAGAATGCTGT  1000

seq1  GTGAACAGTGTTATTAGCGGTTGTTTTAGGACTT  1027
      ||||||||||||||||||| ||||||  ||||||
seq2  GTGAACAGTGTTATTAGCGTTTGTTTAGGGACTT  1034