MoG+ -Mouse Genome database with high added value-

BAC Information

BAC name
Region	Chromosome -
Gene	search by nearby gene name.
Format	rows / page	Page	1

BAC

Clone Name	B6Ng01-209M13
Chromosome	5 (Build37)
Map Location	21,055,599 - 21,197,597
singlet/doublet	doublet
Overlap gene	Fbxl13, LOC625004, LOC667253, Armc10, AB112350
Upstream gene	Magi2, LOC100041850, Phtf2, LOC622367, Tmem60, Rsbn1l, Ptpn12, EG626903, A530088I07Rik, Fgl2, AI847670
Downstream gene	Pmpcb, Dnajc2, Psmc2, Slc26a5, Reln, Dnaja1-ps, LOC100041982, Orc5l, LOC100042049, LOC668232, LOC100042067
Link	Open Mouse BAC browser

Click to get alignment info.

name	Magi2 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:50791 MGI:1354953
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 3 mRNAs, 114 ESTs, 3 Proteins

name	LOC100041850 (CDS detail)
type	gene
link	vega ensembl
xref	GeneID:100041850
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 5 ESTs, 2 Proteins pseudo : _no_value

name	Phtf2 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:68770 MGI:1916020
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	LOC622367 (CDS detail)
type	gene
link	vega ensembl
xref	GeneID:622367
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 5 Proteins pseudo : _no_value

name	Tmem60 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:212090 MGI:2673965
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	Rsbn1l (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:242860 MGI:3036237
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	Ptpn12 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:19248 MGI:104673
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	EG626903 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:626903 MGI:3644652
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 7 Proteins

name	A530088I07Rik (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:212167 MGI:2442259
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	Fgl2 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:14190 MGI:103266
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	AI847670 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:330050 MGI:2140983
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	Fbxl13 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:320118 MGI:2443416
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	LOC625004 (CDS detail)
type	gene
link	vega ensembl
xref	GeneID:625004
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 12 mRNAs, 1538 ESTs, 12 Proteins pseudo : _no_value

name	LOC667253 (CDS detail)
type	gene
link	vega ensembl
xref	GeneID:667253
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 7 mRNAs, 54 ESTs, 7 Proteins

name	Armc10 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:67211 MGI:1914461
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	AB112350 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:242864 MGI:2140885
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	Pmpcb (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:73078 MGI:1920328
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	Dnajc2 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:22791 MGI:99470
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	Psmc2 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:19181 MGI:109555
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	Slc26a5 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:80979 MGI:1933154
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	Reln (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:19699 MGI:103022
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	Dnaja1-ps (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:111256 MGI:1270127
definition	gene_synonym : Hsj2-ps note : DnaJ (Hsp40) homolog, subfamily A, member 1, pseudogene pseudo : _no_value

name	LOC100041982 (CDS detail)
type	gene
link	vega ensembl
xref	GeneID:100041982
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 2 mRNAs, 62 ESTs, 1 Protein

name	Orc5l (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:26429 MGI:1347044
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	LOC100042049 (CDS detail)
type	gene
link	vega ensembl
xref	GeneID:100042049
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 4 mRNAs, 214 ESTs, 8 Proteins

name	LOC668232 (CDS detail)
type	gene
link	vega ensembl
xref	GeneID:668232
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 43 ESTs, 6 Proteins pseudo : _no_value

name	LOC100042067 (CDS detail)
type	gene
link	vega ensembl
xref	GeneID:100042067
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 4 mRNAs, 993 ESTs, 10 Proteins

name	Magi2 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:149253604 GeneID:50791 MGI:1354953
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 1 mRNA, 69 ESTs, 1 Protein product : membrane associated guanylate kinase, WW and PDZ domain containing 2, transcript variant 2 transcript_id : XM_001000876.2

name	Magi2 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:149253605 GeneID:50791 MGI:1354953
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 2 mRNAs, 109 ESTs, 1 Protein product : membrane associated guanylate kinase, WW and PDZ domain containing 2, transcript variant 5 transcript_id : XM_001000915.2

name	Phtf2 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:34328396 GeneID:68770 MGI:1916020
definition	exception : unclassified transcription discrepancy note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : putative homeodomain transcription factor 2 transcript_id : NM_172992.2

name	Tmem60 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:113930706 GeneID:212090 MGI:2673965
definition	exception : unclassified transcription discrepancy note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : transmembrane protein 60 transcript_id : NM_177601.3

name	Rsbn1l (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:124430546 GeneID:242860 MGI:3036237
definition	exception : unclassified transcription discrepancy note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : round spermatid basic protein 1-like transcript_id : NM_001080977.1

name	Ptpn12 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:34328194 GeneID:19248 MGI:104673
definition	exception : unclassified transcription discrepancy note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : protein tyrosine phosphatase, non-receptor type 12 transcript_id : NM_011203.2

name	EG626903 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:94374330 GeneID:626903 MGI:3644652
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 7 Proteins product : predicted gene, EG626903 transcript_id : XM_891513.2

name	A530088I07Rik (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:119392089 GeneID:212167 MGI:2442259
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : RIKEN cDNA A530088I07 gene transcript_id : NM_175437.3

name	Fgl2 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:31542813 GeneID:14190 MGI:103266
definition	exception : unclassified transcription discrepancy note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : fibrinogen-like protein 2 transcript_id : NM_008013.2

name	AI847670 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:61098168 GeneID:330050 MGI:2140983
definition	exception : unclassified transcription discrepancy note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : expressed sequence AI847670 transcript_id : NM_177869.3

name	Fbxl13 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:142369610 GeneID:320118 MGI:2443416
definition	exception : unclassified transcription discrepancy note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : F-box and leucine-rich repeat protein 13 transcript_id : NM_177076.3

name	LOC667253 (CDS detail)
type	mRNA
link	vega ensembl NCBI
xref	GI:149253608 GeneID:667253
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 7 mRNAs, 54 ESTs, 7 Proteins product : similar to Zbtb8os protein transcript_id : XM_001001111.2

name	Armc10 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:141801817 GeneID:67211 MGI:1914461
definition	exception : unclassified transcription discrepancy note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : armadillo repeat containing 10 transcript_id : NM_026034.2

name	AB112350 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:142387907 GeneID:242864 MGI:2140885
definition	exception : unclassified transcription discrepancy note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : cDNA sequence AB112350 transcript_id : NM_178728.4

name	Pmpcb (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:142357637 GeneID:73078 MGI:1920328
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : peptidase (mitochondrial processing) beta transcript_id : NM_028431.2

name	Dnajc2 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:142352068 GeneID:22791 MGI:99470
definition	exception : unclassified transcription discrepancy note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : DnaJ (Hsp40) homolog, subfamily C, member 2 transcript_id : NM_009584.2

name	Psmc2 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:141802004 GeneID:19181 MGI:109555
definition	exception : unclassified transcription discrepancy note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : proteasome (prosome, macropain) 26S subunit, ATPase 2 transcript_id : NM_011188.2

name	Slc26a5 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:118130720 GeneID:80979 MGI:1933154
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : solute carrier family 26, member 5 transcript_id : NM_030727.4

name	Reln (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:117320553 GeneID:19699 MGI:103022
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : reelin transcript_id : NM_011261.2

name	LOC100041982 (CDS detail)
type	mRNA
link	vega ensembl NCBI
xref	GI:149253609 GeneID:100041982
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 2 mRNAs, 62 ESTs, 1 Protein product : similar to 1110007L15Rik protein transcript_id : XM_001477332.1

name	Orc5l (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:133893201 GeneID:26429 MGI:1347044
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : origin recognition complex, subunit 5-like (S. cerevisiae) transcript_id : NM_011959.2

name	LOC100042049 (CDS detail)
type	mRNA
link	vega ensembl NCBI
xref	GI:149253612 GeneID:100042049
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 4 mRNAs, 214 ESTs, 8 Proteins product : similar to ribosomal protein L22 like 1 transcript_id : XM_001478033.1

name	LOC100042067 (CDS detail)
type	mRNA
link	vega ensembl NCBI
xref	GI:149253615 GeneID:100042067
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 4 mRNAs, 993 ESTs, 9 Proteins product : similar to Rpl17 protein, transcript variant 1 transcript_id : XM_001478057.1

name	LOC100042067 (CDS detail)
type	mRNA
link	vega ensembl NCBI
xref	GI:149253617 GeneID:100042067
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 128 ESTs, 2 Proteins product : similar to Rpl17 protein, transcript variant 2 transcript_id : XM_001478073.1

name	Magi2 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:94374305 GeneID:50791 MGI:1354953
definition	codon_start : 1 product : membrane associated guanylate kinase, WW and PDZ domain containing 2 isoform 2 protein_id : XP_001000876.1

name	Magi2 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:94374307 GeneID:50791 MGI:1354953
definition	codon_start : 1 product : membrane associated guanylate kinase, WW and PDZ domain containing 2 isoform 5 protein_id : XP_001000915.1

name	Phtf2 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:34328397 GeneID:68770 MGI:1916020
definition	GO_component : GO:0005634 - nucleus [Evidence IEA] GO_function : GO:0003677 - DNA binding [Evidence IEA] codon_start : 1 exception : mismatches in translation product : putative homeodomain transcription factor 2 protein_id : NP_766580.2

name	Tmem60 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:29243966 CCDS:CCDS19101.1 GeneID:212090 MGI:2673965
definition	GO_component : GO:0016021 - integral to membrane [Evidence IEA]; GO:0016020 - membrane [Evidence IEA] codon_start : 1 product : transmembrane protein 60 protein_id : NP_808269.1

name	Rsbn1l (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:124430547 GeneID:242860 MGI:3036237
definition	codon_start : 1 product : round spermatid basic protein 1-like protein_id : NP_001074446.1

name	Ptpn12 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:34328195 CCDS:CCDS19102.1 GeneID:19248 MGI:104673
definition	GO_component : GO:0005829 - cytosol [Evidence IDA] GO_function : GO:0016787 - hydrolase activity [Evidence IEA]; GO:0004721 - phosphoprotein phosphatase activity [Evidence IDA]; GO:0004725 - protein tyrosine phosphatase activity [Evidence IEA]; GO:0004872 - receptor activity [Evidence IEA] GO_process : GO:0006470 - protein amino acid dephosphorylation [Evidence IDA] codon_start : 1 product : protein tyrosine phosphatase, non-receptor type 12 protein_id : NP_035333.2

name	EG626903 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:94374331 GeneID:626903 MGI:3644652
definition	codon_start : 1 product : hypothetical protein protein_id : XP_896606.2

name	A530088I07Rik (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:119392090 GeneID:212167 MGI:2442259
definition	GO_function : GO:0008233 - peptidase activity [Evidence IEA] codon_start : 1 product : hypothetical protein LOC212167 protein_id : NP_780646.2

name	Fgl2 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:31542814 CCDS:CCDS19103.1 GeneID:14190 MGI:103266
definition	GO_process : GO:0019835 - cytolysis [Evidence IEA] codon_start : 1 note : fibrinogen-like protein; associated with MHV-3 induced prothrombinase activity product : fibrinogen-like protein 2 protein_id : NP_032039.2

name	AI847670 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:61098169 GeneID:330050 MGI:2140983
definition	codon_start : 1 product : hypothetical protein LOC330050 protein_id : NP_808537.2

name	Fbxl13 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:28892987 GeneID:320118 MGI:2443416
definition	GO_function : GO:0016740 - transferase activity [Evidence IEA] GO_process : GO:0006512 - ubiquitin cycle [Evidence IEA] codon_start : 1 exception : mismatches in translation product : F-box and leucine-rich repeat protein 13 protein_id : NP_796050.1

name	LOC667253 (CDS detail)
type	CDS
link	vega ensembl NCBI
xref	GI:94374315 GeneID:667253
definition	codon_start : 1 product : similar to Zbtb8os protein protein_id : XP_001001111.1

name	Armc10 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:13385536 CCDS:CCDS19104.1 GeneID:67211 MGI:1914461
definition	GO_function : GO:0005488 - binding [Evidence IEA] codon_start : 1 product : SVH protein protein_id : NP_080310.1

name	AB112350 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:30520157 CCDS:CCDS19105.1 GeneID:242864 MGI:2140885
definition	GO_function : GO:0016787 - hydrolase activity [Evidence IEA] codon_start : 1 note : Metallo-beta-lactamase domain containing 1 product : N-acyl-phosphatidylethanolamine-hydrolyzing phospholipase D protein_id : NP_848843.1

name	Pmpcb (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:95113671 CCDS:CCDS19106.1 GeneID:73078 MGI:1920328
definition	GO_component : GO:0005743 - mitochondrial inner membrane [Evidence IDA]; GO:0005739 - mitochondrion [Evidence IEA] GO_function : GO:0016787 - hydrolase activity [Evidence IEA]; GO:0046872 - metal ion binding [Evidence IEA]; GO:0004222 - metalloendopeptidase activity [Evidence IEA]; GO:0008237 - metallopeptidase activity [Evidence IEA]; GO:0004240 - mitochondrial processing peptidase activity [Evidence IEA]; GO:0008233 - peptidase activity [Evidence IEA]; GO:0008270 - zinc ion binding [Evidence IEA] GO_process : GO:0006508 - proteolysis [Evidence IEA] codon_start : 1 product : mitochondrial processing peptidase beta subunit protein_id : NP_082707.1

name	Dnajc2 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:6677659 CCDS:CCDS19107.1 GeneID:22791 MGI:99470
definition	GO_component : GO:0005634 - nucleus [Evidence IEA] GO_function : GO:0003677 - DNA binding [Evidence IEA]; GO:0031072 - heat shock protein binding [Evidence IEA]; GO:0005515 - protein binding [Evidence IPI] GO_process : GO:0006260 - DNA replication [Evidence IMP]; GO:0000085 - G2 phase of mitotic cell cycle [Evidence IMP]; GO:0006457 - protein folding [Evidence IEA]; GO:0045449 - regulation of transcription [Evidence IEA] codon_start : 1 note : zuotin related factor 2; zuotin related factor 1 product : DnaJ (Hsp40) homolog, subfamily C, member 2 protein_id : NP_033610.1

name	Psmc2 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:33859604 CCDS:CCDS19108.1 GeneID:19181 MGI:109555
definition	GO_component : GO:0005737 - cytoplasm [Evidence IEA]; GO:0005829 - cytosol [Evidence IEA]; GO:0016020 - membrane [Evidence IEA]; GO:0005634 - nucleus [Evidence IEA]; GO:0043234 - protein complex [Evidence IEA] GO_function : GO:0005524 - ATP binding [Evidence IEA]; GO:0016787 - hydrolase activity [Evidence IEA]; GO:0017111 - nucleoside-triphosphatase activity [Evidence IEA]; GO:0000166 - nucleotide binding [Evidence IEA] GO_process : GO:0030163 - protein catabolism [Evidence IEA] codon_start : 1 product : proteasome (prosome, macropain) 26S subunit, ATPase 2 protein_id : NP_035318.1

name	Slc26a5 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:28933459 CCDS:CCDS19109.1 GeneID:80979 MGI:1933154
definition	GO_component : GO:0016323 - basolateral plasma membrane [Evidence IDA]; GO:0016020 - membrane [Evidence IEA] GO_function : GO:0003774 - motor activity [Evidence IEA]; GO:0008271 - sulfate porter activity [Evidence IEA]; GO:0005215 - transporter activity [Evidence IEA] GO_process : GO:0008360 - regulation of cell shape [Evidence IEA]; GO:0042391 - regulation of membrane potential [Evidence IDA]; GO:0008272 - sulfate transport [Evidence IEA]; GO:0006810 - transport [Evidence IEA] codon_start : 1 note : prestin (motor protein); outer hair cell motor protein product : prestin protein_id : NP_109652.3

name	Reln (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:117320554 GeneID:19699 MGI:103022
definition	GO_component : GO:0005737 - cytoplasm [Evidence IDA]; GO:0005578 - extracellular matrix (sensu Metazoa) [Evidence TAS]; GO:0005615 - extracellular space [Evidence IDA] GO_function : GO:0016787 - hydrolase activity [Evidence IEA]; GO:0008233 - peptidase activity [Evidence IEA]; GO:0005515 - protein binding [Evidence IEA]; GO:0004252 - serine-type endopeptidase activity [Evidence IEA] GO_process : GO:0007411 - axon guidance [Evidence IMP]; GO:0007420 - brain development [Evidence IMP]; GO:0007155 - cell adhesion [Evidence IEA]; GO:0000904 - cellular morphogenesis during differentiation [Evidence IMP]; GO:0007417 - central nervous system development [Evidence IMP]; GO:0007275 - development [Evidence IEA]; GO:0010001 - glial cell differentiation [Evidence IMP]; GO:0007626 - locomotory behavior [Evidence IMP]; GO:0001764 - neuron migration [Evidence IMP]; GO:0018108 - peptidyl-tyrosine phosphorylation [Evidence IDA]; GO:0045860 - positive regulation of protein kinase activity [Evidence IGI] [Evidence IDA]; GO:0051057 - positive regulation of small GTPase mediated signal transduction [Evidence IDA] codon_start : 1 note : extracellular matrix serine protease product : reelin precursor protein_id : NP_035391.2

name	LOC100041982 (CDS detail)
type	CDS
link	vega ensembl NCBI
xref	GI:149253610 GeneID:100041982
definition	codon_start : 1 product : similar to 1110007L15Rik protein protein_id : XP_001477382.1

name	Orc5l (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:6754948 CCDS:CCDS19110.1 GeneID:26429 MGI:1347044
definition	GO_component : GO:0005634 - nucleus [Evidence IEA] GO_function : GO:0005524 - ATP binding [Evidence IEA]; GO:0000166 - nucleotide binding [Evidence IEA] GO_process : GO:0006260 - DNA replication [Evidence TAS] codon_start : 1 note : mouse origin recognition complex 5; origin recognition complex, subunit 5 homolog product : origin recognition complex subunit 5 protein_id : NP_036089.1

name	LOC100042049 (CDS detail)
type	CDS
link	vega ensembl NCBI
xref	GI:149253613 GeneID:100042049
definition	codon_start : 1 product : hypothetical protein protein_id : XP_001478083.1

name	LOC100042067 (CDS detail)
type	CDS
link	vega ensembl NCBI
xref	GI:149253618 GeneID:100042067
definition	codon_start : 1 product : similar to Rpl17 protein isoform 2 protein_id : XP_001478123.1

name	LOC100042067 (CDS detail)
type	CDS
link	vega ensembl NCBI
xref	GI:149253616 GeneID:100042067
definition	codon_start : 1 product : similar to Rpl17 protein isoform 1 protein_id : XP_001478107.1

name	LOC622367 (CDS detail)
type	exon
link	vega ensembl
xref	GeneID:622367
definition	number : 1 pseudo : _no_value

name	LOC100041850 (CDS detail)
type	misc_RNA
link	vega ensembl NCBI
xref	GI:149253606 GeneID:100041850
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 5 ESTs, 2 Proteins product : similar to mitochondrial ribosomal protein S36 pseudo : _no_value transcript_id : XR_033320.1

name	LOC625004 (CDS detail)
type	misc_RNA
link	vega ensembl NCBI
xref	GI:149253607 GeneID:625004
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 12 mRNAs, 1538 ESTs, 12 Proteins product : similar to 60S ribosomal protein L7 pseudo : _no_value transcript_id : XR_033417.1

name	LOC668232 (CDS detail)
type	misc_RNA
link	vega ensembl NCBI
xref	GI:149253614 GeneID:668232
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 43 ESTs, 6 Proteins product : similar to ubiquitin-conjugating enzyme E2L 3 pseudo : _no_value transcript_id : XR_033517.1

clone name	MSMg01-291M19
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-387M10
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-338B07
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-354K22
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-335N03
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-477E20
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-468J16
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-266O07
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-421F02
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-176B01
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-434I14
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-424J16
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-105L21
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-477P13
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-149H15
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-155N22
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-164H11
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-528H24
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-186J06
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-084M10
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-302J21
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-518O18
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-499G05
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-510F18
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-291I20
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-193M11
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-349D07
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-522F01
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-402N15
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-218E20
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-342F19
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-164L16
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-119N14
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-212J12
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-048M03
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-218O18
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-336H19
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-438P14
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-372G13
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-328L03
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-085B07
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-413C10
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-362J04
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-106M10
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-377O03
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-477D12
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-106M04
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-099E23
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-072N20
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-072N22
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-542O06
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-060B10
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-453M12
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-436B14
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-453F15
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-501O17
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-462L22
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-178B23
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-427E02
singlet/doublet	doublet
plural/unique	plural

clone name	MSMg01-276G06
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-055P07
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-427L07
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-356P22
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-524G24
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-494N10
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-336N19
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-197K19
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-365K24
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-387M18
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-505P06
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-182O10
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-293B12
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-105C24
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-535G19
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-424J19
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-183D22
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-339G13
singlet/doublet	doublet
plural/unique	plural

clone name	MSMg01-532A10
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-138H09
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-059E09
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-127N17
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-156F21
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-373K23
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-116O17
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-420D20
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-076P15
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-079C09
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-527H17
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-109D06
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-354D16
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-121G14
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-134F24
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-268I09
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-010O04
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-252C13
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-142H08
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-151M14
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-010C18
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-102J13
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-302D08
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-336O07
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-029M01
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-204H22
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-325D15
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-031E09
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-223O16
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-319A23
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-344H14
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-143A14
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-009H04
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-204O07
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-067B15
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-071H19
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-302F04
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-348E22
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-126H06
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-048E03
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-014J14
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-116P06
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-185O10
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-325C01
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-026N16
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-161B01
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-071J07
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-076E03
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-299L05
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-023F18
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-321E09
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-086A14
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-090I19
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-136H02
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-060K14
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-235P22
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-062L19
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-289B24
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-290C01
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-023O18
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-328M10
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-306M04
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-209M13
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-342O14
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-073I22
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-033H15
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-318O02
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-240I03
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-265G08
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-022O13
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-105G07
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-171E20
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-048D14
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-254K14
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-145O11
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-047A11
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-103B07
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-028M06
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-129N23
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-263F12
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-282E18
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-002M21
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-085F24
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-021J09
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-154B08
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-027M24
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-172A12
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-275J07
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-109P11
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-291J12
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-153O01
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-102G16
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-101H11
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-198O24
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-154F05
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-327D23
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-005B07
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-174H21
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-027H01
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-175D10
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-217E07
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-003M06
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-027E06
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-134G01
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-038G05
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-160M22
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-052M03
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-097B22
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-317L23
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-239I06
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-273C04
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-109O11
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-248O03
singlet/doublet	doublet
plural/unique	unique

BAC End Information

BAC end	BAC-end 1	BAC-end 2
end name	B6Ng01-209M13.b	B6Ng01-209M13.g
ACC	GA028314	GA028315
length	1,085	993
definition	B6Ng01-209M13.b	B6Ng01-209M13.g
singlet/doublet	doublet	doublet
BLAST hit	unique	unique
Map location.	(21,196,510 - 21,197,597)	(21,055,599 - 21,056,546)
sequence	gaattcagtgcaaccaaagtgggagcactcaccaaagtgggagcactcac cagatttggagcactcactagagttggaacactgaccaaagtgggaactg agctgttcactgctctctttttcccaccagaggttacaaagatcccaggt ctccatttctttttgtcatgggttgcttatgcacagaaagttttctttta gtgtagttatgatggagtaggaacaggaaaaaggatacccacattttgga atcacagttttgttaaagttggcttaaggaaagtgaaaggacctttaagg tcatttgcatattttaagcttagtgtctttcctgcctttatccaccaacc tctttaaccatctaattctgtatagcatttagatattattaccaccagga acaaatctacttttgtggctagttttatttaaagtattaaagaagggata attaaataaaagagacattttttgcctattttctaaatttgtcataacat gattatcctgagttatccagttgtgttcagttaaatggtgttttatatgc tattttgcctgcatgtacacaggtgtactgtgtacatgcctcatgttcaa taaggctggaagagggtttggaagcccctgaactggcgttgaggatagtt gtgagccactatctgggcaccacacctgggtcctctgtaagggcagtaag tgttcttacctctccagaggcttccttctaattgccattaaatctttact ttattacttacatgaaaggaaaaacttgtagaggcgatgtttagagtgtt catatggtttagtgacttaaaatctcttactagcccataggtgactttta gttcagtatactgcattagtctgatagttaatatttaaagccttggcagt gtgcagccaggacagcattgtcaggcacctgctgtccctgactcctcttg caagaaatgtgctttcaagttaaagagttgacttatgttttgtgtttatt cctcttacaatttactgttaatctaactattacttttgttaacatttctt ttatcaaacaatttggtgtttccaagcaatttttt	gaattctcaaaaaggaaataaaatatggactgcttgtttggaaaatggaa aaagcacggaacgagtctgatatgcttttcccaaattcctatttagaaat aagtatctggctttgtgccatttttaagagaaaagtttaaaaagatattt gcgtctcatattccaacccaaaaagaaccatgtagttaataaagttagaa aacgcagacaggttgctagttatgacgacaacttaaaaactcatctatga ataacttaaaacttttttctgaccaaaataaatttttactaagagattta tgaactttgaaaaaaagcaaaagtactctgttcctaaaaggatgattata catagatgattattttatccttattaatatagtgattaatatctaactag ttctccaaaactgtgcataaatatctttactgtcaatttttatatcttac tatcttactgacacaaagattaggtaacatatgattgacaagtgctaata caaaattggttatagttgattctagttagctaagtggttctcacaaaaca ccttcattggctttggcagattctgacagaggtagcccaccagtgaccac tgcagttaaagtgtgcgtgtacttccccaggttacattacacactacaca cattgttttcaaacactgcactacagagttaggcaaactgagctgtgtgg ccaggctgcactctgctgacaataacacaagtgcttgcattgttgaatca gatcgttttaaggaattgaaagaaaaaatattgcctcaatttttgtccta tttccaatgtgctggctataagcatggtaaactttcaaattctgctttct aaatgccctttccatcagtttaaatcaaacaattttcaaaacaataattc aaatcttgtcttgtcacattagccaattttcatggtgtgggacacttcct tatcagcccctttccaagcttattggggggtgggtggctgaaa
quality values	Open. Hide. 47 36 24 35 54 34 26 39 39 54 42 52 54 62 47 30 62 62 62 62 62 62 62 47 62 62 42 41 62 54 56 62 42 42 38 50 32 32 38 34 38 43 51 62 51 59 62 59 62 62 59 59 51 59 62 62 62 62 62 62 62 62 51 59 62 62 59 59 59 59 59 62 62 62 62 62 62 62 62 62 62 59 62 54 54 62 59 62 62 62 62 62 62 62 62 59 62 59 62 62 59 54 54 62 62 62 62 62 62 59 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 59 54 62 62 62 62 62 62 62 62 62 62 59 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 59 62 62 62 62 62 62 62 62 62 62 62 62 62 62 59 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 59 62 62 62 62 59 56 62 62 62 62 62 62 62 62 59 59 62 62 62 62 59 59 59 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 59 59 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 59 56 62 59 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 59 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 54 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 49 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 47 47 62 62 54 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 54 54 62 62 62 62 62 62 62 62 62 62 62 62 54 62 62 62 62 62 62 62 62 62 62 62 62 54 58 54 58 58 54 58 54 58 58 58 58 58 54 58 58 58 54 54 58 58 54 54 58 54 58 54 58 58 54 58 58 54 58 58 58 54 58 58 52 54 54 58 58 58 58 58 58 54 41 49 41 54 54 37 52 54 54 52 42 54 34 58 58 58 54 58 50 58 35 58 43 39 58 54 58 54 52 58 50 54 58 58 58 54 54 49 50 49 58 58 29 26 45 49 49 49 51 39 58 42 29 51 47 49 58 45 39 58 51 30 47 53 50 46 45 50 50 58 49 58 58 50 53 50 41 58 40 58 35 54 51 49 49 54 58 51 51 50 53 53 49 58 32 39 50 23 49 46 46 53 50 32 39 36 31 34 39 32 58 54 50 53 46 41 39 41 53 52 58 43 28 34 58 26 48 37 50 40 50 52 50 53 53 49 32 26 50 42 51 27 35 36 52 52 50 58 37 39 41 32 51 50 31 42 39 58 50 41 41 39 32 39 42 52 41 41 31 49 52 53 58 51 32 39 33 54 51 51 41 34 53 43 52 39 52 32 49 35 52 34 21 51 20 39 23 54 37 39 28 53 31 28 19 6 44 32 28 37 42 39 54 30 7 54 25 52 28 19 38 32 26 25 28 37 54 54 19 21 54 37 53 29 40 40 42 31 52 26 44 54 45 30 32 31 13 46 53 40 42 37 37 54 54 33 21 17 32 24 36 40 32 36 34 31 26 33 31 53 33 20 11 14 31 28 31 33 18 33 37 18 40 40 41 25 35 34 22 31 19 51 28 36 47 32 29 25 25 20 30 41 21 31 31 32 19 12 12 23 28 24 15 17 30 25 23 22 8 11 51 26 24 22 19 12 32 22 36 15 13 21 20 18 21 35 30 36 31 32 36 33 42 46 31 32 27 38 27 32 34 37 30 43 17 27 30 14 42 31 29 31 46 41 29 37 15 20 13 25 46 32 36 19 21 13 46 41 29 41 31 18 31 9 6 30 26 33 21 30 25 26 11 17 9 46 46 23 31 17 29 18 38 31 26 25 21 34 6 8 21 18 31 22 24 11 21 24 41 18 33 31 14 37 11 10 24 23 8 11 28 25 16 21 23 14 5 9 9 16 23 48 48 10 29 10 4 4 5 16 16 33 39 21 16 7 19 37 14 25 24 32 26 39 31 24 21 25 25 31 21 23 6 7 15 10 13 9 7 11 16 15 28 26 13 21 15 39 28 30 28 27	Open. Hide. 62 47 42 44 62 62 62 47 35 62 62 62 59 43 59 33 32 32 51 51 45 45 51 59 62 59 62 62 59 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 59 62 62 62 62 62 62 62 62 62 62 59 62 62 59 62 62 59 62 62 62 62 62 62 59 62 62 62 62 62 54 62 54 54 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 59 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 49 54 62 62 62 62 54 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 59 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 59 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 59 62 62 62 59 59 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 59 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 54 62 62 62 62 62 62 62 62 62 62 62 62 59 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 59 62 62 59 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 59 59 62 62 62 62 62 62 62 62 62 62 62 62 59 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 54 56 62 56 62 56 62 47 62 62 62 62 62 62 56 62 62 62 62 62 62 62 62 62 62 62 62 62 54 62 62 62 62 62 62 62 62 62 62 62 62 54 54 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 54 54 58 58 58 54 58 58 58 58 54 58 58 58 58 58 58 58 52 58 58 58 58 45 45 58 58 58 48 58 58 58 58 58 58 58 58 58 58 58 49 54 54 58 58 38 37 58 58 58 58 58 54 58 58 58 54 54 54 58 58 58 58 54 52 48 58 58 54 54 58 54 54 45 41 48 51 51 58 47 58 58 54 54 51 50 50 50 58 16 45 58 54 50 58 58 47 53 42 58 49 53 53 58 36 33 37 47 51 58 58 58 54 51 58 52 39 49 50 50 52 58 54 51 39 46 54 51 49 50 58 50 54 52 58 58 58 42 36 41 51 58 39 47 32 58 58 52 54 40 58 50 51 39 50 53 53 53 41 50 41 58 49 51 53 58 58 51 33 27 58 54 49 50 54 53 53 33 52 50 47 53 53 52 40 54 35 49 54 52 39 54 49 37 50 44 38 50 54 54 37 53 53 53 52 53 40 54 50 39 53 31 54 42 52 52 42 40 35 45 53 53 52 52 42 51 37 42 29 31 30 38 37 54 45 32 52 33 51 41 34 45 40 49 35 53 34 29 51 34 34 45 47 32 46 53 34 45 27 32 41 31 45 12 6 46 51 37 31 52 32 46 41 36 31 38 32 45 52 52 28 53 53 49 46 47 30 31 31 31 42 45 42 51 45 43 30 40 29 47 51 51 37 41 19 46 42 31 38 33 51 30 30 31 28 27 33 42 25 33 25 30 31 42 31 30 31 36 31 31 30 38 17 26 38 46 18 31 46 42 32 34 48 42 31 33 46 26 31 31 35 15 33 32 31 46 37 31 24 27 46 9 46 18 16 46 39 31 48 32 32 42 19 36 36 21 16 25 46 32 32 44 31 31 34 31 46 29 29 32 19 33 48 48 33 8 5 46 44 38 17 24 33 35 31 23 29 15 34 33 36 30 28 31 19 16 31 21 26 33 11 42 22 32 18 16 11 12 13 22 27 31 31 10 38 24 44 44 22 31 18 27 25 33 15 32 18 33 43 19 32 27 23 21 19 16 18 21 25 6 7 15 27 19 18 32 48 48 34 10 39 17 28 24 17 23 14 32 27 10 19 12 31 32 39 21 40 40 30 14 30 48 33 11 9 21 9 22 24 16 38 20

Alignment Information

BAC End 1

BAC End 2

seq1: chr5_21196510_21197597
seq2: B6Ng01-209M13.b_43_1127 (reverse)

seq1  AAAAAATTGCTTG--AACA-CAAATTGTTTGATAAAAGAAATGTTAAACA  47
      |||||||||||||  |||| ||||||||||||||||||||||||| ||||
seq2  AAAAAATTGCTTGGAAACACCAAATTGTTTGATAAAAGAAATGTT-AACA  49

seq1  AAAGT-ATAGTTAGATTTAACAGTAAATTGTAAGAGGAATAAACACAAAA  96
      ||||| ||||||||| ||||||||||||||||||||||||||||||||||
seq2  AAAGTAATAGTTAGA-TTAACAGTAAATTGTAAGAGGAATAAACACAAAA  98

seq1  CATAAGTCAACTCTTTAAACTTGAAAGCACATTTTCTTTGCAAGAGGAGT  146
      |||||||||||||||| |||||||||||||||||   |||||||||||||
seq2  CATAAGTCAACTCTTT-AACTTGAAAGCACATTT--CTTGCAAGAGGAGT  145

seq1  CAGGGACAGCAGGTGCCCTGACAATGCTTGTCCTGGCTGCACACTGCCAA  196
      ||||||||||||||| ||||||||||| ||||||||||||||||||||||
seq2  CAGGGACAGCAGGTG-CCTGACAATGC-TGTCCTGGCTGCACACTGCCAA  193

seq1  GGCTTTAAATATTAACTATCAGACTAATGCAGTATACTGAACTAAAAGTC  246
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCTTTAAATATTAACTATCAGACTAATGCAGTATACTGAACTAAAAGTC  243

seq1  ACCTATGGGCTAGTAAGAGATTTTAAGTCACTAAACCATATGAACACTCT  296
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCTATGGGCTAGTAAGAGATTTTAAGTCACTAAACCATATGAACACTCT  293

seq1  AAACATCGCCTCTACAAGTTTTTCCTTTCATGTAAGTAATAAAGTAAAGA  346
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACATCGCCTCTACAAGTTTTTCCTTTCATGTAAGTAATAAAGTAAAGA  343

seq1  TTTAATGGCAATTAGAAGGAAGCCTCTGGAGAGGTAAGAACACTTACTGC  396
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTAATGGCAATTAGAAGGAAGCCTCTGGAGAGGTAAGAACACTTACTGC  393

seq1  CCTTACAGAGGACCCAGGTGTGGTGCCCAGATAGTGGCTCACAACTATCC  446
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTACAGAGGACCCAGGTGTGGTGCCCAGATAGTGGCTCACAACTATCC  443

seq1  TCAACGCCAGTTCAGGGGCTTCCAAACCCTCTTCCAGCCTTATTGAACAT  496
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAACGCCAGTTCAGGGGCTTCCAAACCCTCTTCCAGCCTTATTGAACAT  493

seq1  GAGGCATGTACACAGTACACCTGTGTACATGCAGGCAAAATAGCATATAA  546
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGGCATGTACACAGTACACCTGTGTACATGCAGGCAAAATAGCATATAA  543

seq1  AACACCATTTAACTGAACACAACTGGATAACTCAGGATAATCATGTTATG  596
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACACCATTTAACTGAACACAACTGGATAACTCAGGATAATCATGTTATG  593

seq1  ACAAATTTAGAAAATAGGCAAAAAATGTCTCTTTTATTTAATTATCCCTT  646
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAAATTTAGAAAATAGGCAAAAAATGTCTCTTTTATTTAATTATCCCTT  643

seq1  CTTTAATACTTTAAATAAAACTAGCCACAAAAGTAGATTTGTTCCTGGTG  696
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTAATACTTTAAATAAAACTAGCCACAAAAGTAGATTTGTTCCTGGTG  693

seq1  GTAATAATATCTAAATGCTATACAGAATTAGATGGTTAAAGAGGTTGGTG  746
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAATAATATCTAAATGCTATACAGAATTAGATGGTTAAAGAGGTTGGTG  743

seq1  GATAAAGGCAGGAAAGACACTAAGCTTAAAATATGCAAATGACCTTAAAG  796
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATAAAGGCAGGAAAGACACTAAGCTTAAAATATGCAAATGACCTTAAAG  793

seq1  GTCCTTTCACTTTCCTTAAGCCAACTTTAACAAAACTGTGATTCCAAAAT  846
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCCTTTCACTTTCCTTAAGCCAACTTTAACAAAACTGTGATTCCAAAAT  843

seq1  GTGGGTATCCTTTTTCCTGTTCCTACTCCATCATAACTACACTAAAAGAA  896
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGGGTATCCTTTTTCCTGTTCCTACTCCATCATAACTACACTAAAAGAA  893

seq1  AACTTTCTGTGCATAAGCAACCCATGACAAAAAGAAATGGAGACCTGGGA  946
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTTTCTGTGCATAAGCAACCCATGACAAAAAGAAATGGAGACCTGGGA  943

seq1  TCTTTGTAACCTCTGGTGGGAAAAAGAGAGCAGTGAACAGCTCAGTTCCC  996
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTTGTAACCTCTGGTGGGAAAAAGAGAGCAGTGAACAGCTCAGTTCCC  993

seq1  ACTTTGGTCAGTGTTCCAACTCTAGTGAGTGCTCCAAATCTGGTGAGTGC  1046
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTTGGTCAGTGTTCCAACTCTAGTGAGTGCTCCAAATCTGGTGAGTGC  1043

seq1  TCCCACTTTGGTGAGTGCTCCCACTTTGGTTGCACTGAATTC  1088
      ||||||||||||||||||||||||||||||||||||||||||
seq2  TCCCACTTTGGTGAGTGCTCCCACTTTGGTTGCACTGAATTC  1085

seq1: chr5_21055599_21056546
seq2: B6Ng01-209M13.g_65_1010

seq1  GAATTCTCAAAAAGGAAATAAAATATGGACTGCTTGTTTGGAAAATGGAA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTCAAAAAGGAAATAAAATATGGACTGCTTGTTTGGAAAATGGAA  50

seq1  AAAGCACGGAACGAGTCTGATATGCTTTTCCCAAATTCCTATTTAGAAAT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGCACGGAACGAGTCTGATATGCTTTTCCCAAATTCCTATTTAGAAAT  100

seq1  AAGTATCTGGCTTTGTGCCATTTTTAAGAGAAAAGTTTAAAAAGATATTT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTATCTGGCTTTGTGCCATTTTTAAGAGAAAAGTTTAAAAAGATATTT  150

seq1  GCGTCTCATATTCCAACCCAAAAAGAACCATGTAGTTAATAAAGTTAGAA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCGTCTCATATTCCAACCCAAAAAGAACCATGTAGTTAATAAAGTTAGAA  200

seq1  AACGCAGACAGGTTGCTAGTTATGACGACAACTTAAAAACTCATCTATGA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACGCAGACAGGTTGCTAGTTATGACGACAACTTAAAAACTCATCTATGA  250

seq1  ATAACTTAAAACTTTTTTCTGACCAAAATAAATTTTTACTAAGAGATTTA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAACTTAAAACTTTTTTCTGACCAAAATAAATTTTTACTAAGAGATTTA  300

seq1  TGAACTTTGAAAAAAAGCAAAAGTACTCTGTTCCTAAAAGGATGATTATA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAACTTTGAAAAAAAGCAAAAGTACTCTGTTCCTAAAAGGATGATTATA  350

seq1  CATAGATGATTATTTTATCCTTATTAATATAGTGATTAATATCTAACTAG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATAGATGATTATTTTATCCTTATTAATATAGTGATTAATATCTAACTAG  400

seq1  TTCTCCAAAACTGTGCATAAATATCTTTACTGTCAATTTTTATATCTTAC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTCCAAAACTGTGCATAAATATCTTTACTGTCAATTTTTATATCTTAC  450

seq1  TATCTTACTGACACAAAGATTAGGTAACATATGATTGACAAGTGCTAATA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATCTTACTGACACAAAGATTAGGTAACATATGATTGACAAGTGCTAATA  500

seq1  CAAAATTGGTTATAGTTGATTCTAGTTAGCTAAGTGGTTCTCACAAAACA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAAATTGGTTATAGTTGATTCTAGTTAGCTAAGTGGTTCTCACAAAACA  550

seq1  CCTTCATTGGCTTTGGCAGATTCTGACAGAGGTAGCCCACCAGTGACCAC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTCATTGGCTTTGGCAGATTCTGACAGAGGTAGCCCACCAGTGACCAC  600

seq1  TGCAGTTAAAGTGTGCGTGTACTTCCCCAGGTTACATTACACACTACACA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCAGTTAAAGTGTGCGTGTACTTCCCCAGGTTACATTACACACTACACA  650

seq1  CATTGTTTTCAAACACTGCACTACAGAGTTAGGCAAACTGAGCTGTGTGG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTGTTTTCAAACACTGCACTACAGAGTTAGGCAAACTGAGCTGTGTGG  700

seq1  CCAGGCTGCACTCTGCTGACAATAACACAAGTGCTTGCATTGTTGAATCA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGGCTGCACTCTGCTGACAATAACACAAGTGCTTGCATTGTTGAATCA  750

seq1  GATCGTTTTAAGGAATTGAAAGAAAAAATATTGCCTCAATTTTTGTCCTA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATCGTTTTAAGGAATTGAAAGAAAAAATATTGCCTCAATTTTTGTCCTA  800

seq1  TTTCCAATGTGCTGGCTATAAGCATGGTAAACTTTCAAATTCTGCTTTCT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCCAATGTGCTGGCTATAAGCATGGTAAACTTTCAAATTCTGCTTTCT  850

seq1  AAATTGCCCTTTCCATCAGTTTAAATCAAAACAATTTTCAAAACAATAAT  900
      ||| ||||||||||||||||||||||| ||||||||||||||||||||||
seq2  AAA-TGCCCTTTCCATCAGTTTAAATC-AAACAATTTTCAAAACAATAAT  898

seq1  TCAAATCTTGTCTTGTCACATTAGCCAATTTTCATGGTGTGGGACACT  948
      ||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAAATCTTGTCTTGTCACATTAGCCAATTTTCATGGTGTGGGACACT  946

BAC Information

Search Parameter

Search Result

BAC

BAC End Information

Alignment Information