BAC Information

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BAC

Clone NameB6Ng01-209N20
Chromosome5 (Build37)
Map Location 70,191,770 - 70,301,351
singlet/doubletdoublet
Overlap genenone
Upstream geneLOC666996, Kctd8, LOC545756, Yipf7, Guf1, Gnpda2
Downstream geneGabrg1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-209N20.bB6Ng01-209N20.g
ACCGA028367GA028368
length1,1631,066
definitionB6Ng01-209N20.b B6Ng01-209N20.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(70,191,770 - 70,192,920)(70,300,293 - 70,301,351)
sequence
gaattccataaacaaggacttcaaatagtaactactgaaaatatccagag
tacagaagaagctcatggttcaaatctagacttttattcatctctggcaa
ataatgatgtgaatgtatgatcatcattacaataatgtagttttgaccaa
gttatataattgatgctgttgcccctaaatttaggaaattaaaatgcatg
ctgcagaatcatttcagaggtatagtgtggagtgttcattatagggacat
gtgatacagatagatacagcatacaaagtaaaccagacattttaaattca
tctaaattttaatgctgtctccacttacattaataaagaatgatggataa
ccataataaaagttaaagttttgaaattttatatattgaagttgtagggg
ctgtcacgtttaatgatgaaatcttcactgcccacatttgaataaacaca
acatgatagaaaataataatgagtgtcatgagctcataaacaattttggt
taaattatctcattaaattttcatcaagaatctttgacaagttctagggt
catgttctctactttattcacaacagagagaaggttacaattatcctcaa
aggtataatcagttaatggcaaggcaataataaactcaagatttctgact
gcaaagtgaagacatgatatcagctataaaatatattttcagtacaaaaa
taatgatagaagagatgtagagaatagattaccaaggagtgtcaaattag
gaaggcaaaccagccccccattgtgctttgcatagctccatcaagtcaag
tgcttctcattgtattatgatttcttaagacagttgtcacactttttttt
aaagagttaaaaaagaactgaaattgaatatgcttgaataaaagatatgg
atttgaaatacaaaatcgattaatttgctttttattccgcagcaaaagta
gagattgcacggccagggtcttcagcactgttctgcttaacagacttcca
cactgctgcagttaaagaaccttgtacactataatgtgccttgacatttg
tccagcctggataggagggctttgctggtcttagtgtatcttgtttgtct
tgcctgcctgaatgtctattgaagaccgctctcttttctggaagaggaat
cggaattggagga

gaattcaagaaatgatgattaaatgtaagaatacatgcatacttttactg
aacatcaatagttttattgaacaacaatagtagtaaacctaagaagatga
acgacatctcagttcattttgttcaagaatgacaagaacacatgccacta
aataactgaagagggtaactggttaagcactgatcattccagaatacttt
ctcttctactgaaaacaaaatcataatgtaacctagctgtacaaatctac
tggatctgacctttgaaatttacttggggcatattagatataatacagga
taaaatcctccttcttttctccaaaacataaacaggcacttcaggttggg
acaggacaaaaagagtttttaatgaagtgtttgtccaatttaatcatagt
gtaagcacactatgctaaacttcatcaggaatttatatataaatatattc
tctaaaagtcacatgtgtgtgccattttgcaagaccaaaggggttgcctt
acaaatgtttgtatgcattaccctgatcagtattgcactctttacagatc
tgaaatggtaaaagtaggcaaggagtagagcaagcatcctttctttcctt
ggacctatttcaagcattatctcaattatgctaagattaatatactgtac
tgtgtgctgctttttaatttcattttcactaatttttataataattaaac
aataaatatatttatgtgatataagtggtggtcttctaaagttttctata
aggacactttacaatgtaatattggtacatttattacagtcaagaatcta
caaatatggagacatttcggccacctttcccagtcagaggacaggtgttc
cacatgggcccaggaggcttttgcctcaggatcagaggaagccatctttg
gttctgggactccacagaaagtagtctgcacaggtgagagtgtggactac
agaagctaacaagcttctgggacagcgagaagcccaaagagcttctgagg
cagcatcattattcgggctccagacattcagcaaccttttcgccagagga
caggtgagcgcccagc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr5_70191770_70192920
seq2: B6Ng01-209N20.b_51_1213

seq1  GAATTCCATAAACAAGGACTTCAAATAGTAACTACTGAAAATATCCAGAG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCATAAACAAGGACTTCAAATAGTAACTACTGAAAATATCCAGAG  50

seq1  TACAGAAGAAGCTCATGGTTCAAATCTAGACTTTTATTCATCTCTGGCAA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACAGAAGAAGCTCATGGTTCAAATCTAGACTTTTATTCATCTCTGGCAA  100

seq1  ATAATGATGTGAATGTATGATCATCATTACAATAATGTAGTTTTGACCAA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAATGATGTGAATGTATGATCATCATTACAATAATGTAGTTTTGACCAA  150

seq1  GTTATATAATTGATGCTGTTGCCCCTAAATTTAGGAAATTAAAATGCATG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTATATAATTGATGCTGTTGCCCCTAAATTTAGGAAATTAAAATGCATG  200

seq1  CTGCAGAATCATTTCAGAGGTATAGTGTGGAGTGTTCATTATAGGGACAT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGCAGAATCATTTCAGAGGTATAGTGTGGAGTGTTCATTATAGGGACAT  250

seq1  GTGATACAGATAGATACAGCATACAAAGTAAACCAGACATTTTAAATTCA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGATACAGATAGATACAGCATACAAAGTAAACCAGACATTTTAAATTCA  300

seq1  TCTAAATTTTAATGCTGTCTCCACTTACATTAATAAAGAATGATGGATAA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTAAATTTTAATGCTGTCTCCACTTACATTAATAAAGAATGATGGATAA  350

seq1  CCATAATAAAAGTTAAAGTTTTGAAATTTTATATATTGAAGTTGTAGGGG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCATAATAAAAGTTAAAGTTTTGAAATTTTATATATTGAAGTTGTAGGGG  400

seq1  CTGTCACGTTTAATGATGAAATCTTCACTGCCCACATTTGAATAAACACA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTCACGTTTAATGATGAAATCTTCACTGCCCACATTTGAATAAACACA  450

seq1  ACATGATAGAAAATAATAATGAGTGTCATGAGCTCATAAACAATTTTGGT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATGATAGAAAATAATAATGAGTGTCATGAGCTCATAAACAATTTTGGT  500

seq1  TAAATTATCTCATTAAATTTTCATCAAGAATCTTTGACAAGTTCTAGGGT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAATTATCTCATTAAATTTTCATCAAGAATCTTTGACAAGTTCTAGGGT  550

seq1  CATGTTCTCTACTTTATTCACAACAGAGAGAAGGTTACAATTATCCTCAA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGTTCTCTACTTTATTCACAACAGAGAGAAGGTTACAATTATCCTCAA  600

seq1  AGGTATAATCAGTTAATGGCAAGGCAATAATAAACTCAAGATTTCTGACT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGTATAATCAGTTAATGGCAAGGCAATAATAAACTCAAGATTTCTGACT  650

seq1  GCAAAGTGAAGACATGATATCAGCTATAAAATATATTTTCAGTACAAAAA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAAAGTGAAGACATGATATCAGCTATAAAATATATTTTCAGTACAAAAA  700

seq1  TAATGATAGAAGAGATGTAGAGAATAGATTACCAAGGAGTGTCAAATTAG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATGATAGAAGAGATGTAGAGAATAGATTACCAAGGAGTGTCAAATTAG  750

seq1  GAAGGCAAACCAGCCCCCCATTGTGCTTTGCATAGCTCCATCAAGTCAAG  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGGCAAACCAGCCCCCCATTGTGCTTTGCATAGCTCCATCAAGTCAAG  800

seq1  TGCTTCTCATTGTATTATGA-TTCTTAAGACAGTTGTCACAC-TTTTTTT  848
      |||||||||||||||||||| ||||||||||||||||||||| |||||||
seq2  TGCTTCTCATTGTATTATGATTTCTTAAGACAGTTGTCACACTTTTTTTT  850

seq1  AAAGAGTTAAAAAAGAACTGAAATTGAATATGCTTGAATAAAAGATATGG  898
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGAGTTAAAAAAGAACTGAAATTGAATATGCTTGAATAAAAGATATGG  900

seq1  ATTTGAAATACAAAATCGATTA--TTGCTTTT--ATCCGCAGC-AAAGTA  943
      ||||||||||||||||||||||  ||||||||   |||||||| ||||||
seq2  ATTTGAAATACAAAATCGATTAATTTGCTTTTTATTCCGCAGCAAAAGTA  950

seq1  GAGATTGCAC-GCCA-GGTCTTCAGCACTGTTCTGCTT-ACAGACTTCCA  990
      |||||||||| |||| |||||||||||||||||||||| |||||||||||
seq2  GAGATTGCACGGCCAGGGTCTTCAGCACTGTTCTGCTTAACAGACTTCCA  1000

seq1  CACTGCTGCAGTTAAAGAA-CTTGTACACTAT-ATGTGCCCTTGACATTT  1038
      ||||||||||||||||||| |||||||||||| ||||| |||||||||||
seq2  CACTGCTGCAGTTAAAGAACCTTGTACACTATAATGTG-CCTTGACATTT  1049

seq1  GTCCAGCCTTGATAGGAGGGCTTTTGCCTTGTCTTAGTGTATCTTGTTTT  1088
      ||||||||| ||||||||||||||   || |||||||||||||||| |||
seq2  GTCCAGCCTGGATAGGAGGGCTTT--GCTGGTCTTAGTGTATCTTG-TTT  1096

seq1  GTCTTGCTTGGCTG-ATGTCTATTGGAGGACCG--CTCTTTTCT-GAAGA  1134
      ||||||| || ||| ||||||||| || |||||  ||||||||| |||||
seq2  GTCTTGCCTGCCTGAATGTCTATT-GAAGACCGCTCTCTTTTCTGGAAGA  1145

seq1  GGAAACGG-ATAGGAGGA  1151
      |||| ||| || ||||||
seq2  GGAATCGGAATTGGAGGA  1163


seq1: chr5_70300293_70301351
seq2: B6Ng01-209N20.g_66_1131 (reverse)

seq1  GCTGGGCGCTCACCTGTCCTCTGGGCGGAAAGGTGGCCGGATGTCTGGAG  50
      |||||||||||||||||||||| |||| |||||| || | ||||||||||
seq2  GCTGGGCGCTCACCTGTCCTCT-GGCGAAAAGGTTGCTGAATGTCTGGAG  49

seq1  CCCGAAT-ATGGTGCTGCCTCAGAAGCTCTTTGG--CTCTCGCCTGTCCC  97
      ||||||| ||| ||||||||||||||||||||||   ||||| |||||||
seq2  CCCGAATAATGATGCTGCCTCAGAAGCTCTTTGGGCTTCTCG-CTGTCCC  98

seq1  AGAAGC-TGTTAGCTTCTGTAGTCCACACTCTCACCTGTGCAGACTACTT  146
      |||||| |||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAGCTTGTTAGCTTCTGTAGTCCACACTCTCACCTGTGCAGACTACTT  148

seq1  TCTGTGGAGTCCCAGAACC-AAGATGGCTTCCTCTGATCCTGAGGCAAAA  195
      ||||||||||||||||||| ||||||||||||||||||||||||||||||
seq2  TCTGTGGAGTCCCAGAACCAAAGATGGCTTCCTCTGATCCTGAGGCAAAA  198

seq1  GCCTCCTGGG-CCATGTGG-ACACCTGTCCTCTGACTGGG-AAGGTGGCC  242
      |||||||||| |||||||| |||||||||||||||||||| |||||||||
seq2  GCCTCCTGGGCCCATGTGGAACACCTGTCCTCTGACTGGGAAAGGTGGCC  248

seq1  G-AATGTCTCCATATTTGTAGATTCTTGACTGTAATAAATGTACCAATAT  291
      | ||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAATGTCTCCATATTTGTAGATTCTTGACTGTAATAAATGTACCAATAT  298

seq1  TACATTGTAAAGTGTCCTTATAGAAAACTTTAGAAGACCACCACTTATAT  341
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACATTGTAAAGTGTCCTTATAGAAAACTTTAGAAGACCACCACTTATAT  348

seq1  CACATAAATATATTTATTGTTTAATTATTATAAAAATTAGTGAAAATGAA  391
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACATAAATATATTTATTGTTTAATTATTATAAAAATTAGTGAAAATGAA  398

seq1  ATTAAAAAGCAGCACACAGTACAGTATATTAATCTTAGCATAATTGAGAT  441
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTAAAAAGCAGCACACAGTACAGTATATTAATCTTAGCATAATTGAGAT  448

seq1  AATGCTTGAAATAGGTCCAAGGAAAGAAAGGATGCTTGCTCTACTCCTTG  491
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGCTTGAAATAGGTCCAAGGAAAGAAAGGATGCTTGCTCTACTCCTTG  498

seq1  CCTACTTTTACCATTTCAGATCTGTAAAGAGTGCAATACTGATCAGGGTA  541
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTACTTTTACCATTTCAGATCTGTAAAGAGTGCAATACTGATCAGGGTA  548

seq1  ATGCATACAAACATTTGTAAGGCAACCCCTTTGGTCTTGCAAAATGGCAC  591
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGCATACAAACATTTGTAAGGCAACCCCTTTGGTCTTGCAAAATGGCAC  598

seq1  ACACATGTGACTTTTAGAGAATATATTTATATATAAATTCCTGATGAAGT  641
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACATGTGACTTTTAGAGAATATATTTATATATAAATTCCTGATGAAGT  648

seq1  TTAGCATAGTGTGCTTACACTATGATTAAATTGGACAAACACTTCATTAA  691
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAGCATAGTGTGCTTACACTATGATTAAATTGGACAAACACTTCATTAA  698

seq1  AAACTCTTTTTGTCCTGTCCCAACCTGAAGTGCCTGTTTATGTTTTGGAG  741
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACTCTTTTTGTCCTGTCCCAACCTGAAGTGCCTGTTTATGTTTTGGAG  748

seq1  AAAAGAAGGAGGATTTTATCCTGTATTATATCTAATATGCCCCAAGTAAA  791
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAGAAGGAGGATTTTATCCTGTATTATATCTAATATGCCCCAAGTAAA  798

seq1  TTTCAAAGGTCAGATCCAGTAGATTTGTACAGCTAGGTTACATTATGATT  841
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCAAAGGTCAGATCCAGTAGATTTGTACAGCTAGGTTACATTATGATT  848

seq1  TTGTTTTCAGTAGAAGAGAAAGTATTCTGGAATGATCAGTGCTTAACCAG  891
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTTTTCAGTAGAAGAGAAAGTATTCTGGAATGATCAGTGCTTAACCAG  898

seq1  TTACCCTCTTCAGTTATTTAGTGGCATGTGTTCTTGTCATTCTTGAACAA  941
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTACCCTCTTCAGTTATTTAGTGGCATGTGTTCTTGTCATTCTTGAACAA  948

seq1  AATGAACTGAGATGTCGTTCATCTTCTTAGGTTTACTACTATTGTTGTTC  991
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGAACTGAGATGTCGTTCATCTTCTTAGGTTTACTACTATTGTTGTTC  998

seq1  AATAAAACTATTGATGTTCAGTAAAAGTATGCATGTATTCTTACATTTAA  1041
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATAAAACTATTGATGTTCAGTAAAAGTATGCATGTATTCTTACATTTAA  1048

seq1  TCATCATTTCTTGAATTC  1059
      ||||||||||||||||||
seq2  TCATCATTTCTTGAATTC  1066


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