BAC Information

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BAC

Clone NameB6Ng01-210D13
Chromosome5 (Build37)
Map Location 11,184,604 - 11,316,811
singlet/doubletdoublet
Overlap geneEG545728, LOC100042819, LOC667942, LOC667948, EG667949
Upstream geneLOC100041395, LOC381612, EG625586, LOC242809, LOC623849, LOC100041408, LOC667880, EG667888, EG667901, EG667907, LOC667916, LOC100041472
Downstream geneSpeer1-ps1, EG667956, LOC667961, EG667967, LOC100042858, LOC667974, EG667986, EG623898, EG668001, LOC668008, EG668011, LOC668017, EG668021, LOC623998, EG668043, LOC545732, LOC384144, LOC100041626
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-210D13.bB6Ng01-210D13.g
ACCGA028619GA028620
length1,1141,132
definitionB6Ng01-210D13.b B6Ng01-210D13.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(11,315,696 - 11,316,811)(11,184,604 - 11,185,714)
sequence
gaattcccaccccttgattcttgtagatatcaatgcattctttaattaaa
tacttatttaaaatagtgaattttatactgattaccctggataatgctca
gatttcttatcagttagattgagaaatgcccattggactttcattgcatc
ttgagtatactatttctgtcattgaaatagctttacacatttgaatttta
attttcttcatcagaacctacaaactttctcatatttccgtgaaaatttg
gtaccagagagtatttctgcagctcacattcctgaactagaaattgatgt
aagcgactgtgatgcccatgactcctaagagaattgttcttatcctttac
tctcaaatttcataagatttagagataagatgagcaattatgaaataagc
acatcagacacagttttgtatttttatgaaaaagatgtttcaacggacta
tggatacacttgatccaaaatatgcaactgcaactttggtcagagaattg
tgagagatcagcttacagtgtagattctcatgtggatggaagatatgcga
cacacattccttaagtcatgcacaaatgtgataacatacagtggtttata
agacaactttaaatgttgtgagttccttgaagataaagattgttccttat
tcatatatgtacatattacacacacagtatgtccctgaaaagttctttat
gatgaagttatgcttattgaatttgctgttttgagttatactacttcact
agagtgaatatagaagtctgtaaacctaggtcagtgccatgcgtaggaat
cccatgaagagcttaataaaatatctcattttttttctatgatattcttt
ttctatgtgacatagacaattaattcaattaggaatgagttagcagtata
aaataaaaataaggtaaaaaagaggaaaaatataacagaaattttggtta
taaaaaagaaagtagcaactaagaaaagaaaaggttatattttatttaac
atttttagggttttttctttaataagatatcttctttattatatttcaaa
tgttatcccctttctagtttccccctctgaaaatccctatccctacctct
cccctgcttcccaa
gaattcagggatagaggcagtggagagtgagttcccagcatgcatttgga
aagcacttgacaggatgtggctttgtaaggttctaggtaatttgagtgta
tgctgagtgtttatacttgcctggcaggtgcctgagtgcttagaagctcc
tcttagtatctagaggggcctgttcccacattttccttctcattgtatat
ctagaaggcctgaggctcattcctgttcctctttgttgccttataatgaa
agacagtaatgctgcatacatttcttttgcatcgcattgtgctctctgtt
tctgtctgtgtctctcattctgtttccttttctcctgtgtgtgtgtgtgt
gtgtgtgtgtatgttcaagtgtgtgagtgtgttcaagtgtgtgagactgt
gtgtgtgcacatgtacctacatgtgcatgttttttgtaagtttaattttc
cccccaaacttgggcacctatggggtctgtgttttggtgtggggattcat
cttcacaacaatttcaaggtgatgttagtgctaaagtctcagagctccca
ctttatttaacagtgttctttgcctatgtggtcacagttgtccatgcact
tgtatcccttgggcatgttataaagctgtgctgatgtctgatcacaactc
caggattatgtgtaaggtctgtttctatggtataagtttattcaggattt
accaccccagttgtgaaaacaggaaaaatgtaatcacaggtttctggtgg
gcaaagacctgggcctaggctcttgagagcatagctggttagactgctac
atccaaccctactgcatgaacaccagggagccagggaaccctccatcttg
atgctttacttctgctgttcctggaccaggataacaaattattcaaagct
gaagatcatcccagtattatagaatccagaatatgctcttcatggctggg
ggtagtccagcactcagcctggagaattgtgttcctaaaagctcaatgtc
atggcagttcctgtcttcctaaggaccaagcccacccagagaaaaaatcc
aattctatgaacaaacttggaatccaacgaagatccaggtcttgtctttt
ctgtgcataaagtttaagagatgtgcggataa
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr5_11315696_11316811
seq2: B6Ng01-210D13.b_44_1157 (reverse)

seq1  TTGGGGAGCAGGGGGAGAGGGTAGGGGATAGGGGATTTTCAGA-GGGGAA  49
      ||||| |||| ||||||| |||| |||||| |||||||||||| ||||||
seq2  TTGGGAAGCA-GGGGAGA-GGTA-GGGATA-GGGATTTTCAGAGGGGGAA  46

seq1  ACTAGAAAAGGGGATAACATTTGAAATATAAATAAAGAAGATATCTTATT  99
      ||||| ||||||||||||||||||||||| ||||||||||||||||||||
seq2  ACTAG-AAAGGGGATAACATTTGAAATAT-AATAAAGAAGATATCTTATT  94

seq1  AAAG-AAAAACCTAAAAAATGTTAAAT-AAATATAACCTTTTCTTTTCTT  147
      |||| |||||||  ||||||||||||| ||||||||||||||||||||||
seq2  AAAGAAAAAACCCTAAAAATGTTAAATAAAATATAACCTTTTCTTTTCTT  144

seq1  AGTTGCTACTTTTCTTTTTATAACCAAAATTTCTGTTATATTTTTCCTCT  197
      ||||||||||||  ||||||||||||||||||||||||||||||||||||
seq2  AGTTGCTACTTTCTTTTTTATAACCAAAATTTCTGTTATATTTTTCCTCT  194

seq1  TTTTTACCTTATTTTTATTTTATACTGCTAACTCATTCCTAATTGAATTA  247
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTACCTTATTTTTATTTTATACTGCTAACTCATTCCTAATTGAATTA  244

seq1  ATTGTCTATGTCACATAGAAAAAGAATATCATAG-AAAAAAATGAGATAT  296
      |||||||||||||||||||||||||||||||||| |||||||||||||||
seq2  ATTGTCTATGTCACATAGAAAAAGAATATCATAGAAAAAAAATGAGATAT  294

seq1  TTTATTAAGCTCTTCATGGGATTCCTACGCATGGCACTGACCTAGGTTTA  346
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTATTAAGCTCTTCATGGGATTCCTACGCATGGCACTGACCTAGGTTTA  344

seq1  CAGACTTCTATATTCACTCTAGTGAAGTAGTATAACTCAAAACAGCAAAT  396
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGACTTCTATATTCACTCTAGTGAAGTAGTATAACTCAAAACAGCAAAT  394

seq1  TCAATAAGCATAACTTCATCATAAAGAACTTTTCAGGGACATACTGTGTG  446
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAATAAGCATAACTTCATCATAAAGAACTTTTCAGGGACATACTGTGTG  444

seq1  TGTAATATGTACATATATGAATAAGGAACAATCTTTATCTTCAAGGAACT  496
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTAATATGTACATATATGAATAAGGAACAATCTTTATCTTCAAGGAACT  494

seq1  CACAACATTTAAAGTTGTCTTATAAACCACTGTATGTTATCACATTTGTG  546
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACAACATTTAAAGTTGTCTTATAAACCACTGTATGTTATCACATTTGTG  544

seq1  CATGACTTAAGGAATGTGTGTCGCATATCTTCCATCCACATGAGAATCTA  596
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGACTTAAGGAATGTGTGTCGCATATCTTCCATCCACATGAGAATCTA  594

seq1  CACTGTAAGCTGATCTCTCACAATTCTCTGACCAAAGTTGCAGTTGCATA  646
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACTGTAAGCTGATCTCTCACAATTCTCTGACCAAAGTTGCAGTTGCATA  644

seq1  TTTTGGATCAAGTGTATCCATAGTCCGTTGAAACATCTTTTTCATAAAAA  696
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTGGATCAAGTGTATCCATAGTCCGTTGAAACATCTTTTTCATAAAAA  694

seq1  TACAAAACTGTGTCTGATGTGCTTATTTCATAATTGCTCATCTTATCTCT  746
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACAAAACTGTGTCTGATGTGCTTATTTCATAATTGCTCATCTTATCTCT  744

seq1  AAATCTTATGAAATTTGAGAGTAAAGGATAAGAACAATTCTCTTAGGAGT  796
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATCTTATGAAATTTGAGAGTAAAGGATAAGAACAATTCTCTTAGGAGT  794

seq1  CATGGGCATCACAGTCGCTTACATCAATTTCTAGTTCAGGAATGTGAGCT  846
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGGGCATCACAGTCGCTTACATCAATTTCTAGTTCAGGAATGTGAGCT  844

seq1  GCAGAAATACTCTCTGGTACCAAATTTTCACGGAAATATGAGAAAGTTTG  896
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAGAAATACTCTCTGGTACCAAATTTTCACGGAAATATGAGAAAGTTTG  894

seq1  TAGGTTCTGATGAAGAAAATTAAAATTCAAATGTGTAAAGCTATTTCAAT  946
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGGTTCTGATGAAGAAAATTAAAATTCAAATGTGTAAAGCTATTTCAAT  944

seq1  GACAGAAATAGTATACTCAAGATGCAATGAAAGTCCAATGGGCATTTCTC  996
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACAGAAATAGTATACTCAAGATGCAATGAAAGTCCAATGGGCATTTCTC  994

seq1  AATCTAACTGATAAGAAATCTGAGCATTATCCAGGGTAATCAGTATAAAA  1046
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATCTAACTGATAAGAAATCTGAGCATTATCCAGGGTAATCAGTATAAAA  1044

seq1  TTCACTATTTTAAATAAGTATTTAATTAAAGAATGCATTGATATCTACAA  1096
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCACTATTTTAAATAAGTATTTAATTAAAGAATGCATTGATATCTACAA  1094

seq1  GAATCAAGGGGTGGGAATTC  1116
      ||||||||||||||||||||
seq2  GAATCAAGGGGTGGGAATTC  1114

seq1: chr5_11184604_11185714
seq2: B6Ng01-210D13.g_66_1197

seq1  GAATTCAGGGATAGAGGCAGTGGAGAGTGAGTTCCCAGCATGCATTTGGA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAGGGATAGAGGCAGTGGAGAGTGAGTTCCCAGCATGCATTTGGA  50

seq1  AAGCACTTGACAGGATGTGGCTTTGTAAGGTTCTAGGTAATTTGAGTGTA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGCACTTGACAGGATGTGGCTTTGTAAGGTTCTAGGTAATTTGAGTGTA  100

seq1  TGCTGAGTGTTTATACTTGCCTGGCAGGTGCCTGAGTGCTTAGAAGCTCC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTGAGTGTTTATACTTGCCTGGCAGGTGCCTGAGTGCTTAGAAGCTCC  150

seq1  TCTTAGTATCTAGAGGGGCCTGTTCCCACATTTTCCTTCTCATTGTATAT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTAGTATCTAGAGGGGCCTGTTCCCACATTTTCCTTCTCATTGTATAT  200

seq1  CTAGAAGGCCTGAGGCTCATTCCTGTTCCTCTTTGTTGCCTTATAATGAA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAGAAGGCCTGAGGCTCATTCCTGTTCCTCTTTGTTGCCTTATAATGAA  250

seq1  AGACAGTAATGCTGCATACATTTCTTTTGCATCGCATTGTGCTCTCTGTT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGACAGTAATGCTGCATACATTTCTTTTGCATCGCATTGTGCTCTCTGTT  300

seq1  TCTGTCTGTGTCTCTCATTCTGTTTCCTTTTCTCCTGTGTGTGTGTGTGT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGTCTGTGTCTCTCATTCTGTTTCCTTTTCTCCTGTGTGTGTGTGTGT  350

seq1  GTGTGTGTGTATGTTCAAGTGTGTGAGTGTGTTCAAGTGTGTGAGACTGT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTGTGTGTATGTTCAAGTGTGTGAGTGTGTTCAAGTGTGTGAGACTGT  400

seq1  GTGTGTGCACATGTACCTACATGTGCATGTTTTTTGTAAGTTTAATTTTC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTGTGCACATGTACCTACATGTGCATGTTTTTTGTAAGTTTAATTTTC  450

seq1  CCCCCAAACTTGGGCACCTATGGGGTCTGTGTTTTGGTGTGGGGATTCAT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCCCAAACTTGGGCACCTATGGGGTCTGTGTTTTGGTGTGGGGATTCAT  500

seq1  CTTCACAACAATTTCAAGGTGATGTTAGTGCTAAAGTCTCAGAGCTCCCA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCACAACAATTTCAAGGTGATGTTAGTGCTAAAGTCTCAGAGCTCCCA  550

seq1  CTTTATTTAACAGTGTTCTTTGCCTATGTGGTCACAGTTGTCCATGCACT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTATTTAACAGTGTTCTTTGCCTATGTGGTCACAGTTGTCCATGCACT  600

seq1  TGTATCCCTTGGGCATGTTATAAAGCTGTGCTGATGTCTGATCACAACTC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTATCCCTTGGGCATGTTATAAAGCTGTGCTGATGTCTGATCACAACTC  650

seq1  CAGGATTATGTGTAAGGTCTGTTTCTATGGTATAAG-TTATTCAGGATTT  699
      |||||||||||||||||||||||||||||||||||| |||||||||||||
seq2  CAGGATTATGTGTAAGGTCTGTTTCTATGGTATAAGTTTATTCAGGATTT  700

seq1  ACCACCCCAGTTGTGAAAACAGGAAAAATGTAATCACAGGTTTCTGGTGG  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCACCCCAGTTGTGAAAACAGGAAAAATGTAATCACAGGTTTCTGGTGG  750

seq1  GCAAAGACCTGGGCCTAGGCTCTTGAGAGCATAGCTGGTTAGACTGCTAC  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAAAGACCTGGGCCTAGGCTCTTGAGAGCATAGCTGGTTAGACTGCTAC  800

seq1  ATCCAACCCTACTGCATGAACA-CAGGGAGCCAGGGAACCCTCCATCTTG  848
      |||||||||||||||||||||| |||||||||||||||||||||||||||
seq2  ATCCAACCCTACTGCATGAACACCAGGGAGCCAGGGAACCCTCCATCTTG  850

seq1  ATGCTTAGCTTCTGCTG-TCCTGGACCAGGATAACAAA-TATTCAAAGCT  896
      ||||||  ||||||||| |||||||||||||||||||| |||||||||||
seq2  ATGCTTTACTTCTGCTGTTCCTGGACCAGGATAACAAATTATTCAAAGCT  900

seq1  GAAGATCATCCCAGTA-TATAGAATCCAGAATATGCTTTCCATGGCT-GG  944
      |||||||||||||||| |||||||||||||||||||| | ||||||| ||
seq2  GAAGATCATCCCAGTATTATAGAATCCAGAATATGCTCTTCATGGCTGGG  950

seq1  GGTAGTCCAGCACTCAGCCT-GAGAAATGTGTTCCTAAAAGCCCATGTTC  993
      |||||||||||||||||||| ||||| ||||||||||||||| ||   ||
seq2  GGTAGTCCAGCACTCAGCCTGGAGAATTGTGTTCCTAAAAGCTCAATGTC  1000

seq1  ATGG-AGTT-CTGTCTTCCT-AGGACCAAGCCCACCCAGAAGAAAAATCC  1040
      |||| |||| |||||||||| |||||||||||||||||||  ||||||||
seq2  ATGGCAGTTCCTGTCTTCCTAAGGACCAAGCCCACCCAGAGAAAAAATCC  1050

seq1  -ATTCTATGAAC-AACT--GAGATCAACGAAGAACCAGGTCCTGTC--TT  1084
       ||||||||||| ||||  ||   ||||||||| ||||||| ||||  ||
seq2  AATTCTATGAACAAACTTGGAATCCAACGAAGATCCAGGTCTTGTCTTTT  1100

seq1  CTGTGCAT-AAGTT--AGAGA--TGGGGATAA  1111
      |||||||| |||||  |||||  || ||||||
seq2  CTGTGCATAAAGTTTAAGAGATGTGCGGATAA  1132