BAC Information

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BAC

Clone NameB6Ng01-212F12
Chromosome5 (Build37)
Map Location 84,013,028 - 84,014,186
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC100039434, Srd5a2l2
Downstream geneLOC100039608, LOC231368, Epha5, LOC100039489
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-212F12.bB6Ng01-212F12.g
ACCGA030164GA030165
length1,2331,131
definitionB6Ng01-212F12.b B6Ng01-212F12.g
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
gaattcaaggcccatacctaaacatgataaaagcaatctacatcaaacca
atagccaacatcaaagtaaatggtgagaagctggaagcaatcccactaaa
atcagggactagacaaggctgtccactctctccctacctattcaacattg
tacttgaagtcctagccagagcaattagacaacaaaagaagatcaagggg
atacaaattggaaaggaagaagtcaaaatatcactctttgcagatgatat
gatagtatatataagtgacgctaaaaattccaccagagaactcctaagcc
tgataaacagcttcaatgaagtagctggatataaaattaactcaaacaag
tcaaaggcctttctctacacaaagaatatacaggctgagaaagaaattag
ggaaacaacatccttctcaatactcacaaataatataaaataccttggcg
tgactctaactaaggaagtgaaaaatctgtatgataagaacttcaagtct
ctaaagaaagaaattaaagaagatctcagaagatggaaagatctcccatg
ctcatggattggcaggatcaacattttaaaaatggctatcttgccaaaag
caatctacagattcaatcaaaattccaactcaattcttcaaggaattaga
aagggcaattggcagattcatctggaatgacaaaaaaccgaggatagcaa
aaactcttctcaaggataaaagaacctctggtggaatcaccatgctggac
ctaaaactgtactacagagcaattgtgatcaaaactgcatggtactggta
tagtgacagacaagtagaccaatggtacagaattgaagacccagagatga
atccacacacctatggtcacttgattctttgacaagggagctaaaaccat
ccagtgaaaaaaagacagcattgtcaacaaatggtgctgccgcaactggc
tgttatcatgtagaagaatgtgaattgatccattttctttctccttgtac
taaggtcaaatctaagtggattaaaggaacctccacattaaaacccgtag
acactgaaactatagaggagaaagtaggtaaagctcgagatattggtaca
ggggaaaatctgattagaacagcatgctggcctgcagatcagattcgata
atggtaccgataatggcagctctctgcaagccaagtgacctgtcatatag
actaagagctcactccacacgatatgtggtcag

gaattctcatataaccgaacagaatgtgagattggattagaataggatac
ggttaatcagactccaggagactaccaatgtgttaaactaaaagtctgag
agaaaatagatagacattaatatcaaacaaatatgtaggactaagttata
ggttttctcaaaggattctactaagttcttttttaaaaaatattttttat
tacatattttcctcaatttcatttccaatgctatccccaaagtcccccat
actctctccacccccactcccctacccacccactcccacttcttggccct
ggcatccctctgtactgaggcatataaagtttgcacgaccaatgggcctc
tctttccactgatggctgactaggctatcttctgctacatatgcagctag
agacacgagctctgtgggggtactaggtagttcatattgttgttccacct
atagggttgcagatccctttagctccttgggtactttctctagctccttt
attgggggccctgtgatccatccaatggctgactgtgagcatccacttct
gtgtttatttctatgcaggtaatctatgtgagttaaaattaaatggaggt
tttccttgcatatttaatattttagtctctgggtgtctattgtgtatttg
gcagctacactaatatttttaaaacattaataaagccacagttacttaat
cataactctatttttgcacagaaaaagagtggagactaaactctgcttga
gcaattaagatataacagaagtttcaattgaaatggacatcaatgacttc
cagtgttcactaacttgtgcacttactggatcttaacttcacagaaccaa
taagctctgggattttgttgctgtcactgcatggtaattaattaataatt
aactaattaattattttgattgtattgtttcttagatggagattttattt
tggtaacactggactatgagggaagactgacttgtgcagaaagcagttta
tatcaaattcacatagagaattttgtactatggaaacatgtaaaatagtt
ctgcttacatgttctataccaccaagtcttctatgctcactttaagttgc
tttccaagaaatataattatcattctaagtc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr5_84013028_84014186
seq2: B6Ng01-212F12.g_69_1199 (reverse)

seq1  GACTTATGAATGATAATATTATTTTCTTTGAAAAAGCATACCTTTAAAAG  50
      |||||| ||||||||||  || |||||| |  |||||| ||  |||||  
seq2  GACTTA-GAATGATAATTATA-TTTCTTGG--AAAGCA-AC--TTAAA--  41

seq1  GTGAGCTATAGGAAGAACTTTGGTGGTAATAGAAACAATGTAAGCAGAAC  100
      |||||| ||| |||||   |||||||| ||||||   |||||||||||||
seq2  GTGAGC-ATA-GAAGA--CTTGGTGGT-ATAGAA--CATGTAAGCAGAAC  84

seq1  CTTTATTTTTACATTGTTTCCATTAGGTACAAAATTTCTCCTATTGTGAA  150
         || ||||||| |||||||||   |||||||| |||| ||| ||||||
seq2  ---TA-TTTTACA-TGTTTCCAT--AGTACAAAA-TTCT-CTA-TGTGAA  124

seq1  TTTGATATAAACTTGCTTTCTGCCACAGTCAGTCTTCCCTCATAGTCCAG  200
      |||||||||||| ||||||||||   ||||||||||||||||||||||||
seq2  TTTGATATAAAC-TGCTTTCTGCACAAGTCAGTCTTCCCTCATAGTCCAG  173

seq1  TGTTACCAAAATAAAATCTCCATCTTAAGAAAACAATACAATCAAAATAA  250
      |||||||||||||||||||||||| |||| ||||||||||||||||||||
seq2  TGTTACCAAAATAAAATCTCCATC-TAAG-AAACAATACAATCAAAATAA  221

seq1  TTAATTAGTTAATTATTAATTAATTACCATGCAGTGACAGCAACAAAATC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAATTAGTTAATTATTAATTAATTACCATGCAGTGACAGCAACAAAATC  271

seq1  CCAGAGCTTATTGGTTCTGTGAAGTTAAGATCCAGTAAGTGCACAAGTTA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGAGCTTATTGGTTCTGTGAAGTTAAGATCCAGTAAGTGCACAAGTTA  321

seq1  GTGAACACTGGAAGTCATTGATGTCCATTTCAATTGAAACTTCTGTTATA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGAACACTGGAAGTCATTGATGTCCATTTCAATTGAAACTTCTGTTATA  371

seq1  TCTTAATTGCTCAAGCAGAGTTTAGTCTCCACTCTTTTTCTGTGCAAAAA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTAATTGCTCAAGCAGAGTTTAGTCTCCACTCTTTTTCTGTGCAAAAA  421

seq1  TAGAGTTATGATTAAGTAACTGTGGCTTTATTAATGTTTTAAAAATATTA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGAGTTATGATTAAGTAACTGTGGCTTTATTAATGTTTTAAAAATATTA  471

seq1  GTGTAGCTGCCAAATACACAATAGACACCCAGAGACTAAAATATTAAATA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTAGCTGCCAAATACACAATAGACACCCAGAGACTAAAATATTAAATA  521

seq1  TGCAAGGAAAACCTCCATTTAATTTTAACTCACATAGATTACCTGCATAG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCAAGGAAAACCTCCATTTAATTTTAACTCACATAGATTACCTGCATAG  571

seq1  AAATAAACACAGAAGTGGATGCTCACAGTCAGCCATTGGATGGATCACAG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATAAACACAGAAGTGGATGCTCACAGTCAGCCATTGGATGGATCACAG  621

seq1  GGCCCCCAATAAAGGAGCTAGAGAAAGTACCCAAGGAGCTAAAGGGATCT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCCCCCAATAAAGGAGCTAGAGAAAGTACCCAAGGAGCTAAAGGGATCT  671

seq1  GCAACCCTATAGGTGGAACAACAATATGAACTACCTAGTACCCCCACAGA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAACCCTATAGGTGGAACAACAATATGAACTACCTAGTACCCCCACAGA  721

seq1  GCTCGTGTCTCTAGCTGCATATGTAGCAGAAGATAGCCTAGTCAGCCATC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTCGTGTCTCTAGCTGCATATGTAGCAGAAGATAGCCTAGTCAGCCATC  771

seq1  AGTGGAAAGAGAGGCCCATTGGTCGTGCAAACTTTATATGCCTCAGTACA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTGGAAAGAGAGGCCCATTGGTCGTGCAAACTTTATATGCCTCAGTACA  821

seq1  GAGGGATGCCAGGGCCAAGAAGTGGGAGTGGGTGGGTAGGGGAGTGGGGG  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGGGATGCCAGGGCCAAGAAGTGGGAGTGGGTGGGTAGGGGAGTGGGGG  871

seq1  TGGAGAGAGTATGGGGGACTTTGGGGATAGCATTGGAAATGAAATTGAGG  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGAGAGAGTATGGGGGACTTTGGGGATAGCATTGGAAATGAAATTGAGG  921

seq1  AAAATATGTAATAAAAAATATTTTTTAAAAAAGAACTTAGTAGAATCCTT  1000
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAATATGTAATAAAAAATATTTTTTAAAAAAGAACTTAGTAGAATCCTT  971

seq1  TGAGAAAACCTATAACTTAGTCCTACATATTTGTTTGATATTAATGTCTA  1050
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGAAAACCTATAACTTAGTCCTACATATTTGTTTGATATTAATGTCTA  1021

seq1  TCTATTTTCTCTCAGACTTTTAGTTTAACACATTGGTAGTCTCCTGGAGT  1100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTATTTTCTCTCAGACTTTTAGTTTAACACATTGGTAGTCTCCTGGAGT  1071

seq1  CTGATTAACCGTATCCTATTCTAATCCAATCTCACATTCTGTTC-ATTAT  1149
      ||||||||||||||||||||||||||||||||||||||||||||  ||||
seq2  CTGATTAACCGTATCCTATTCTAATCCAATCTCACATTCTGTTCGGTTAT  1121

seq1  ATGAGAATTC  1159
      ||||||||||
seq2  ATGAGAATTC  1131


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