BAC Information

Click to search

BAC

Clone NameB6Ng01-213L19
Chromosome5 (Build37)
Map Location 87,169,495 - 87,170,706
singlet/doubletsinglet
Overlap geneTmprss11e
Upstream geneCenpc1, LOC100039521, AI586015, Ube1l2, Gnrhr, Tmprss11c, Tmprss11d, Tmprss11a, 9930032O22Rik, Tmprss11f, Tmprss11b
Downstream geneA730098D12Rik, LOC622056, Ugt2b34, Ugt2b1, LOC665424, LOC545767, Ugt2b35, Ugt2b36, LOC665440, Ugt2b5, LOC435848, Ugt2b37, LOC665468, Ugt2a3, LOC665476, LOC665483, LOC665494, LOC100039818, Ugt2b38, Ugt2a2, Ugt2a1, Sult1b1, Sult1d1, Sult1e1, Csn1s1, Csn2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-213L19.bB6Ng01-213L19.g
ACCGA031176GA031177
length1,203266
definitionB6Ng01-213L19.b B6Ng01-213L19.g
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
gaattctcaaaaaccagtgctccgtcaggtaggaagtgaccaagtgatta
atgatggcttgactgtaatttcttttgaatgactgtgttaaaatgtcata
gctgtatgttagtttattatttttggaattttcttgactagaaaagttga
gatgcaaaggtaaatgtcctttaaaaagacaaggaaaattaactcatctt
ctccaatggagtacttaggagcccaaggttggtaacatgctagagacaga
agggaggatgagaaaacataaccggggcaaaaacatgcatgttaaacctt
cagttccaccaatcatggaatcatagatttagaagactcagtctcacata
tctgtatgtattgccacctgatattaaaattagctgctcacagggttgct
ataaggcaacaaaggacaaaatatatgtggagatgaaatatctaccacgg
agtgttattattcctcctgcgcagattattatttagctaggaagaataag
cacaagagagccactgtaccacatggccattacagttaataacaacatat
catgtgcatgaaaaatactgagagtacattttacctgtcctcatacccag
aaagaaaagtctacctgaaatactgtgcatgttcgtttgcttaacttagc
catcccataatgtttaagcatttcaagtcaacatgtacatattaaatgta
taatgttaattatttaaaaggtcatctatttttatttaagttctataagt
attaatcataacaacagttcctgggccacggagttagcccacacaagtct
gtctctccttctaaactacgcagagaacacaggtgcactgggaggtcaga
ttctatctctagcgctgactgactcacctattcctgtggccatatgcaaa
ttatctatacccgcagagctgagctacctttgtagaatggaatttgcatg
cttcctgttgcagaggctaattttaaagaacacttcttgataactgaagc
agtcttgaaaatataataactttttctatctcttgcacagtaaagacatt
gaactagtcgtagagggcacatacatagattgaagagaaaagaccttgta
gaatggtcagcaattgtgaataaacatgaaccttaaggcctatatacctg
cctgaatcatttcagtctgtcattcatgccatgggaaaaaaaactatgtc
tct
tctgtttagttccataccctattttttgattgggttgtttggtttcctag
tggttagcttcttgagtactttatatattttggatattagccctctgtct
gatatgtggttagtgaagactttttcccaatctgtaggttgccaatttgt
cctttgggctatgtcaggctaacaagtcgaaggacctaagtaaggatgtc
ttaatcccacttgggagggagaagaaggcaatcataggaggaggggaagg
agggatggatctgggt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr5_87169495_87170706
seq2: B6Ng01-213L19.b_42_1244

seq1  GAATTCTCAAAAACCAGTGCTCCGTCAGGTAGGAAGTGACCAAGTGATTA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTCAAAAACCAGTGCTCCGTCAGGTAGGAAGTGACCAAGTGATTA  50

seq1  ATGATGGCTTGACTGTAATTTCTTTTGAATGACTGTGTTAAAATGTCATA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGATGGCTTGACTGTAATTTCTTTTGAATGACTGTGTTAAAATGTCATA  100

seq1  GCTGTATGTTAGTTTATTATTTTTGGAATTTTCTTGACTAGAAAAGTTGA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTGTATGTTAGTTTATTATTTTTGGAATTTTCTTGACTAGAAAAGTTGA  150

seq1  GATGCAAAGGTAAATGTCCTTTAAAAAGACAAGGAAAATTAACTCATCTT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATGCAAAGGTAAATGTCCTTTAAAAAGACAAGGAAAATTAACTCATCTT  200

seq1  CTCCAATGGAGTACTTAGGAGCCCAAGGTTGGTAACATGCTAGAGACAGA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCCAATGGAGTACTTAGGAGCCCAAGGTTGGTAACATGCTAGAGACAGA  250

seq1  AGGGAGGATGAGAAAACATAACCGGGGCAAAAACATGCATGTTAAACCTT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGGAGGATGAGAAAACATAACCGGGGCAAAAACATGCATGTTAAACCTT  300

seq1  CAGTTCCACCAATCATGGAATCATAGATTTAGAAGACTCAGTCTCACATA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGTTCCACCAATCATGGAATCATAGATTTAGAAGACTCAGTCTCACATA  350

seq1  TCTGTATGTATTGCCACCTGATATTAAAATTAGCTGCTCACAGGGTTGCT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGTATGTATTGCCACCTGATATTAAAATTAGCTGCTCACAGGGTTGCT  400

seq1  ATAAGGCAACAAAGGACAAAATATATGTGGAGATGAAATATCTACCACGG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAAGGCAACAAAGGACAAAATATATGTGGAGATGAAATATCTACCACGG  450

seq1  AGTGTTATTATTCCTCCTGCGCAGATTATTATTTAGCTAGGAAGAATAAG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTGTTATTATTCCTCCTGCGCAGATTATTATTTAGCTAGGAAGAATAAG  500

seq1  CACAAGAGAGCCACTGTACCACATGGCCATTACAGTTAATAACAACATAT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACAAGAGAGCCACTGTACCACATGGCCATTACAGTTAATAACAACATAT  550

seq1  CATGTGCATGAAAAATACTGAGAGTACATTTTACCTGTCCTCATACCCAG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGTGCATGAAAAATACTGAGAGTACATTTTACCTGTCCTCATACCCAG  600

seq1  AAAGAAAAGTCTACCTGAAATACTGTGCATGTTCGTTTGCTTAACTTAGC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGAAAAGTCTACCTGAAATACTGTGCATGTTCGTTTGCTTAACTTAGC  650

seq1  CATCCCATAATGTTTAAGCATTTCAAGTCAACATGTACATATTAAATGTA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATCCCATAATGTTTAAGCATTTCAAGTCAACATGTACATATTAAATGTA  700

seq1  TAATGTTAATTATTTAAAAGGTCATCTATTTTTATTTAAGTTCTATAAGT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATGTTAATTATTTAAAAGGTCATCTATTTTTATTTAAGTTCTATAAGT  750

seq1  ATTAATCATAACAACAGTTCCTGGGCCACGGAGTTAGCCCACACAAGTCT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTAATCATAACAACAGTTCCTGGGCCACGGAGTTAGCCCACACAAGTCT  800

seq1  GTCTCTCCTTCTAAACTACGCAGAGAACACAGGTGCACTGGGAGGTCAGA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCTCTCCTTCTAAACTACGCAGAGAACACAGGTGCACTGGGAGGTCAGA  850

seq1  TTCTATCTCTAGCGCTGACTGACTCACCTATTCCTGTGGCCATATGCAAA  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTATCTCTAGCGCTGACTGACTCACCTATTCCTGTGGCCATATGCAAA  900

seq1  TTATCTATACCCGCAGAGCTGAGCTACCTTTGTAGAATGGAATTTGCATG  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATCTATACCCGCAGAGCTGAGCTACCTTTGTAGAATGGAATTTGCATG  950

seq1  CTTCCTGTTGCAGAGGCTAATTTTAAAGAACACTTCTTGAATAACTGAAG  1000
      ||||||||||||||||||||||||||||||||||||||| ||||||||||
seq2  CTTCCTGTTGCAGAGGCTAATTTTAAAGAACACTTCTTG-ATAACTGAAG  999

seq1  CAGTCTTTGAAAATAT-ATAACTTTTTCTATCTCTTGGCACAGTAAAGAC  1049
      ||||| |||||||||| ||||||||||||||||||| |||||||||||||
seq2  CAGTC-TTGAAAATATAATAACTTTTTCTATCTCTT-GCACAGTAAAGAC  1047

seq1  AATTGAACTAGTCGTAAGAGGGCAC--ACATAGA-TGAAGAGAAAAGACC  1096
       |||||||||||||| |||||||||  ||||||| |||||||||||||||
seq2  -ATTGAACTAGTCGT-AGAGGGCACATACATAGATTGAAGAGAAAAGACC  1095

seq1  CTGTAAGGATGGGTCAGC-ATTGTGATTAAAACATGAGCTTTAGGGCCTT  1145
       ||||  ||  ||||||| ||||||| | |||||||| | ||| |||| |
seq2  TTGTA--GAATGGTCAGCAATTGTGAAT-AAACATGAACCTTAAGGCC-T  1141

seq1  ATATACCTGCCTGTATTCATTTTCAGTTCTGTCATCCATTGCCAATGGGA  1195
      ||||||||||||| | ||| |||||| |||||||| || |||| ||||||
seq2  ATATACCTGCCTG-AATCA-TTTCAG-TCTGTCATTCA-TGCC-ATGGGA  1186

seq1  AAAAAAATTATGTCTCT  1212
      ||||||| |||||||||
seq2  AAAAAAACTATGTCTCT  1203