BAC Information

Click to search

BAC

Clone NameB6Ng01-214N15
Chromosome5 (Build37)
Map Location 143,967,381 - 144,076,073
singlet/doubletdoublet
Overlap geneSpdyb, Zfp12, Zfp316, Gm792, E130309D02Rik
Upstream geneD930005D10Rik, Papolb, Mmd2, Wipi2, Slc29a4, Tnrc18, LOC100038954, LOC100041004, LOC100038972, LOC100038984, LOC100042525, LOC100038888, Zfp469, LOC666788, Fbxl18, D430018E03Rik, LOC100042558, Actb, Fscn1, 2810055G22Rik, LOC667809, Olfr718-ps1, LOC640324, LOC100042605, Rbak, 4933411G11Rik
Downstream geneZdhhc4, Grid2ip, Kdelr2, LOC231869, LOC670671, Daglb, Rac1, 2810453I06Rik, Pscd3, Usp42, Eif2ak1, 4921520G13Rik, Jtv1, Pms2, 4930526H21Rik, AU022870, Ocm, Lmtk2, Bhlhb8, 2210010N04Rik, Bri3, Baiap2l1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-214N15.bB6Ng01-214N15.g
ACCGA031989GA031990
length814384
definitionB6Ng01-214N15.b B6Ng01-214N15.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(144,075,259 - 144,076,073)(143,967,381 - 143,967,763)
sequence
gaattccctccaggagctccagcttcttgaaatcatgtgcagttacttcc
aggagcaaagcaaggactctgtgcggcagatcattttctcctcccttttc
agcccccaagggaacaaagccgacgacagccgaatgagcttgttgggaaa
gctggtctccatggccgtggccgtgtgtcggatccccgtgttggaatgtg
cggcctcctggctccaggtactgctctcgaaataacgtctcccacagtct
ccatagacaggataacaagagtttggatgttcgtagaggtcttttacacg
tgcgtgatgtcatcgatcatccctgcctgggtgctacacccagtcccgtt
ttttttatggagcaaacattttttttgtttctttgattgacttttttttt
ttgaaaaaagaatttggaatgtagcccaagctgaattcaaccctcatgac
ccttctacctgagtctcttgaggattatagggtccacgtgtctggctctg
gaattgtagccttcttgtacacgaagtactaaaattaggatttgtttcat
tttgaaacaggttctgattatgtagcctgggctgtcctggatctcaaaat
gtagaccaggctggccttgaactccacccataccaggtgtctctgcctcc
ctagcatttgctattaaaggtgtatgccatcacacccagcttacttttag
tattactgtgcatgtgtgatgtgtgtgtggatgcctgagccacaacacat
ctggagaggtctgatgacagctgtgtgaatttggtcactactgtctcctt
tttttgagataggg
tgctcatctgaccaaatttttaactcctaagattcctgatgtcattgcat
atgtgtttctctctctggttgttttgttttgttttgttttgttttgtttg
agatggggcctcatctatatcctcaactggcctcaaatgggacatgtaac
tgagaaagacctagaacttccaacccctctgcctctgccccggtgcactg
accttgcaggtatacatcttcactctcagtatctgctcggttgtggggtg
agaccctggtgtggtggtttgaataaggacggcccccatgtatttgaata
cttggcccatagcaagtgacactactaagagagtggccttgttggaggag
gtgtgtcactgtgggggtggggtttgacgccatg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr5_144075259_144076073
seq2: B6Ng01-214N15.b_43_856 (reverse)

seq1  CCCTGTCTCAAAAAAAGGTGACAGTAGTGACCCGACTTCACACAGCTGTC  50
      |||| ||||||||||||| ||||||||||| || | ||||||||||||||
seq2  CCCTATCTCAAAAAAAGGAGACAGTAGTGA-CCAAATTCACACAGCTGTC  49

seq1  CTCAGGCCTCTCCAGATGTGCTGTGGCACAGGCAACCACACACACATCAC  100
       |||| |||||||||||||| |||||| |||||| |||||||||||||||
seq2  ATCAGACCTCTCCAGATGTGTTGTGGCTCAGGCATCCACACACACATCAC  99

seq1  ACATGCACAGTAATACTAAAAGTAAGCTGGGTGTGATGGCATACACCTTT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATGCACAGTAATACTAAAAGTAAGCTGGGTGTGATGGCATACACCTTT  149

seq1  AATAGCAAATGCTAGGGAGGCAGAGACACCTGGTCTGGGTTGAGTTCAAG  200
      |||||||||||||||||||||||||||||||||| ||||| |||||||||
seq2  AATAGCAAATGCTAGGGAGGCAGAGACACCTGGTATGGGTGGAGTTCAAG  199

seq1  GCCAGCCTGGTCTACATTTTGAGATCCAGGACAGCCCAGGCTACATAATC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCAGCCTGGTCTACATTTTGAGATCCAGGACAGCCCAGGCTACATAATC  249

seq1  AGAACCTGTTTCAAAATGAAACAAATCCTAATTTTACTACTTTGTGTACA  300
      |||||||||||||||||||||||||||||||||||| ||||| |||||||
seq2  AGAACCTGTTTCAAAATGAAACAAATCCTAATTTTAGTACTTCGTGTACA  299

seq1  AGAAGGCTACAATTCCAGAGCCAGACACGTGGACCCTATAATCCTCAAGA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAGGCTACAATTCCAGAGCCAGACACGTGGACCCTATAATCCTCAAGA  349

seq1  GACTCAGGTAGAAGGGTCATGAGGGTTGAATTCAGCTTGGGCTACATACC  400
      ||||||||||||||||||||||||||||||||||||||||||||||| ||
seq2  GACTCAGGTAGAAGGGTCATGAGGGTTGAATTCAGCTTGGGCTACATTCC  399

seq1  AAATTCTTTTTTCAAAAAAAAAAAGTCAATCAAAGAAACAAAAAAAATGT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATTCTTTTTTCAAAAAAAAAAAGTCAATCAAAGAAACAAAAAAAATGT  449

seq1  TTGCTCCATAAAAAAAACGGGACTGGGTGTAGCACCCAGGCAGGGATGAT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGCTCCATAAAAAAAACGGGACTGGGTGTAGCACCCAGGCAGGGATGAT  499

seq1  CGATGACATCACGCACGTGTAAAAGACCTCTACGAACATCCAAACTCTTG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGATGACATCACGCACGTGTAAAAGACCTCTACGAACATCCAAACTCTTG  549

seq1  TTATCCTGTCTACGGAGACTGTGGGAGACGCTATTTCGAGAGCAGTACCT  600
      |||||||||||| ||||||||||||||||| |||||||||||||||||||
seq2  TTATCCTGTCTATGGAGACTGTGGGAGACGTTATTTCGAGAGCAGTACCT  599

seq1  GGAGCCAGGAGGCCGCACATTCCAACACGGGGATCCGACACACGGCCACG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAGCCAGGAGGCCGCACATTCCAACACGGGGATCCGACACACGGCCACG  649

seq1  GCCATGGAGACCAGCTTTCCCAACAAGCTCATTCGGCTGTCGTCGGCTTT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCATGGAGACCAGCTTTCCCAACAAGCTCATTCGGCTGTCGTCGGCTTT  699

seq1  GTTCCCTTGGGGGCTGAAAAGGGAGGAGAAAATGATCTGCCGCACAGAGT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTCCCTTGGGGGCTGAAAAGGGAGGAGAAAATGATCTGCCGCACAGAGT  749

seq1  CCTTGCTTTGCTCCTGGAAGTAACTGCACATGATTTCAAGAAGCTGGAGC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTGCTTTGCTCCTGGAAGTAACTGCACATGATTTCAAGAAGCTGGAGC  799

seq1  TCCTGGAGGGAATTC  815
      |||||||||||||||
seq2  TCCTGGAGGGAATTC  814

seq1: chr5_143967381_143967763
seq2: B6Ng01-214N15.g_66_448

seq1  GAATTCTGCTCATCTGACCAAATTTTTAACTCCTAAGATTCCTGATGTCA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTGCTCATCTGACCAAATTTTTAACTCCTAAGATTCCTGATGTCA  50

seq1  TTGCATATGTGTTTCTCTCTCTGGTTGTTTTGTTTTGTTTTGTTTTGTTT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGCATATGTGTTTCTCTCTCTGGTTGTTTTGTTTTGTTTTGTTTTGTTT  100

seq1  TGTTTGAGATGGGGCCTCATCTATATCCTCAGCTGGCCTCAAATGGGACA  150
      ||||||||||||||||||||||||||||||| ||||||||||||||||||
seq2  TGTTTGAGATGGGGCCTCATCTATATCCTCAACTGGCCTCAAATGGGACA  150

seq1  TGTAACTGAGAAAGACCTAGAACTTCCAACCCCTCTGCCTCTGCCCCGGT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTAACTGAGAAAGACCTAGAACTTCCAACCCCTCTGCCTCTGCCCCGGT  200

seq1  GCACTGACCTTGCAGGTATACATCTTCACTCTCAGTATCTGCTCGGTTGT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCACTGACCTTGCAGGTATACATCTTCACTCTCAGTATCTGCTCGGTTGT  250

seq1  GGGGTGAGACCCTGGTGTGGTGGTTTGAATAAGGACGGCCCCCATGTATT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGGTGAGACCCTGGTGTGGTGGTTTGAATAAGGACGGCCCCCATGTATT  300

seq1  TGAATACTTGGCCCATAGCAAGTGACACTACTAGGAGAGTGGCCTTGTTG  350
      ||||||||||||||||||||||||||||||||| ||||||||||||||||
seq2  TGAATACTTGGCCCATAGCAAGTGACACTACTAAGAGAGTGGCCTTGTTG  350

seq1  GAGGAGGTGTGTCACTGTGGGGGTGGGGTTTGA  383
      |||||||||||||||||||||||||||||||||
seq2  GAGGAGGTGTGTCACTGTGGGGGTGGGGTTTGA  383