BAC Information

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BAC

Clone NameB6Ng01-216N06
Chromosome5 (Build37)
Map Location 7,117,487 - 7,303,233
singlet/doubletdoublet
Overlap geneLOC100042651
Upstream geneLOC100041208, EG435830
Downstream gene4921511H03Rik, LOC242823, LOC667767, EG546855, Steap4, Sri, LOC433840, Adam22
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-216N06.bB6Ng01-216N06.g
ACCGA033415GA033416
length1,118787
definitionB6Ng01-216N06.b B6Ng01-216N06.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(7,302,133 - 7,303,233)(7,117,487 - 7,118,036)
sequence
gaattcttttggcatccagctctggatggtgctgaagctctgttgtcatg
gagacctcacaccctgcttcctcctcccagttggctcagtggcctctgga
ttctcttctatgaggacactgtaaagctgcacaatcttgcttctcttccc
gagtgcatgattggtgaggtgcacttgtcccactgaactcatctacagat
ggggcaccttactccagagcttcaagatggtacagccagttggctgacac
tggccaagaaaaactgagcccatttaaatatctactcttgacgaaccact
cttaagtcatttcctcaggccacttacaactcttctttccatagatgtta
aatttacactctgaaatttagataccatgattgtaaatattatttttatt
gaggtcttttcatttgcacagactctcatttgcattagagccaaatggtt
agacccctgtaaacatacatagaaattaataatatatagactgaacaggt
tatatttaagatatatgtacatatgtgtacaaatatatgcatccagtaac
aatagtgggtaaaaaaggacatgaatttgaagggactcaaggagggggta
tgtggataaactcagagggaggaaaggtaagggaaaaaatgttgcaatac
tattttccttaaaaaattaaagtaactttaaacaggtaaaaagttcctta
ttatctgggttaacttctttgtctatttctatttcaaacaattttttctt
gcctttttaaatgactttaatttaatttaagcattcatttaattcaattt
aaatgttaatttcaaattgtacttcttaccttacttaaaaaaattcttat
tttagcctggtgtgatggcccacacattttaatccccagtacttgggaaa
ctgaaggtaagcagcttctctgagtttcaagggtcagctttgatctacaa
gagtgagtttcaggacagccaagggctaactcggaataatctctgtctaa
attccaaagaaacaattctgtatttcaaaattgccattggaatctgaatt
ttcaccaccttcttcataattcatctggatttctctatttcagattaatc
caacgattatataaaatg

gaattccaagttctccaatacctcttacttccttcgatattcagaattcc
attttatttttttactggaaattttttatttacatttcaaatgttatccc
ctttcctggtttccccccagaaaaccccctataccatctctcctccccct
tcttctatgttcccaaaccacccacccactcctgcctccttgcccttcat
tcccctacacgggggcatcaagccttcacagaacaaagggcctctcctcc
cattgatgttcaacaaggccacactctgctacatatccagttggagccat
gcgtccctccatgtgtagtttttggttggtggtttagtccctgggagctc
tgggggtctggttggttgatattgttcttcctatggggttgaaaagccat
ttagagcctgcagtcttttctctaactcctctattagggacctcatgctc
agtccaatggttggctatgagcatcctcttctatatttgtcagagcctct
catgagacagttatatcaacaagcacttcttggtatccaaaatagtgtct
gtgtttggtgactggatataggatggatccccaggtggggcagtctttag
agagcctttttcttcagtgtatactccacaatttgtctccatatctactt
ccatgagaatttttgttaccacttctaagaaggaacaaagcatccacact
gtggtcttcctttcttcttgagcttcatatggtcagggaattatatcttt
gggtattttgagttttggggggcttatcagtggagtg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr5_7302133_7303233
seq2: B6Ng01-216N06.b_45_1162 (reverse)

seq1  CATTT--TATAATC-TGTGATTAATATCTGGAATAGAGAAATCCAGATGA  47
      |||||  ||||||| |  |||||  ||||| |||||||||||||||||||
seq2  CATTTTATATAATCGTTGGATTA--ATCTGAAATAGAGAAATCCAGATGA  48

seq1  A-TATGAAGAAGGTGGTGAAAATCAAGAATTCCAAATGC-ATTTTGAAAT  95
      | |||||||||||||||||||||  || |||||||  || ||||||||||
seq2  ATTATGAAGAAGGTGGTGAAAATTCAG-ATTCCAATGGCAATTTTGAAAT  97

seq1  ACAGAATTGTTTCTTTGGATTTTAGACAG-GGTTTCTCTGTG-TAGCCCT  143
      ||||||||||||||||||| ||||||||| | ||  || | | |||||||
seq2  ACAGAATTGTTTCTTTGGAATTTAGACAGAGATTATTCCGAGTTAGCCCT  147

seq1  T-GCTGTCCTGAAACTCACTC-TGTAGATC-AAGCTG-CCCTTG-AACTC  188
      | ||||||||||||||||||| |||||||| |||||| |||||| |||||
seq2  TGGCTGTCCTGAAACTCACTCTTGTAGATCAAAGCTGACCCTTGAAACTC  197

seq1  AGAG-AGCTGCTTACC-TCAGTTTCCCAAGTACT-GGGATT-AAATGTGT  234
      |||| ||||||||||| ||||||||||||||||| |||||| ||||||||
seq2  AGAGAAGCTGCTTACCTTCAGTTTCCCAAGTACTGGGGATTAAAATGTGT  247

seq1  GGGCCATCACACCAGGCT-AAATAAGAATTTTTTTAAGTAAGGTAAGAAG  283
      |||||||||||||||||| |||||||||||||||||||||||||||||||
seq2  GGGCCATCACACCAGGCTAAAATAAGAATTTTTTTAAGTAAGGTAAGAAG  297

seq1  TACAATTTGAAATTAACATTTAAATTGAATTAAATGAATGCTTAAATTAA  333
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACAATTTGAAATTAACATTTAAATTGAATTAAATGAATGCTTAAATTAA  347

seq1  ATTAAAGTCATTTAAAAAGGCAAG-AAAAATTGTTTGAAATAGAAATAGA  382
      |||||||||||||||||||||||| |||||||||||||||||||||||||
seq2  ATTAAAGTCATTTAAAAAGGCAAGAAAAAATTGTTTGAAATAGAAATAGA  397

seq1  C-AAGAAGTTAACCCAGATAATAAGGAACTTTTTACCTGTTTAAAGTTAC  431
      | ||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAAGAAGTTAACCCAGATAATAAGGAACTTTTTACCTGTTTAAAGTTAC  447

seq1  TTTAATTTTTTAAGGAAAATAGTATTGCAACA-TTTTTCCCTTACCTTTC  480
      |||||||||||||||||||||||||||||||| |||||||||||||||||
seq2  TTTAATTTTTTAAGGAAAATAGTATTGCAACATTTTTTCCCTTACCTTTC  497

seq1  CTCCCTCTGAGTTTATCCACATACCCCCTCCTTGAGTCCCTTCAAATTCA  530
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCCCTCTGAGTTTATCCACATACCCCCTCCTTGAGTCCCTTCAAATTCA  547

seq1  TGTCCTTTTTTACCCACTATTGTTACTGGATGCATATATTTGTACACATA  580
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTCCTTTTTTACCCACTATTGTTACTGGATGCATATATTTGTACACATA  597

seq1  TGTACATATATCTTAAATATAACCTGTTCAGTCTATATATTATTAATTTC  630
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTACATATATCTTAAATATAACCTGTTCAGTCTATATATTATTAATTTC  647

seq1  TATGTATGTTTACAGGGGTCTAACCATTTGGCTCTAATGCAAATGAGAGT  680
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATGTATGTTTACAGGGGTCTAACCATTTGGCTCTAATGCAAATGAGAGT  697

seq1  CTGTGCAAATGAAAAGACCTCAATAAAAATAATATTTACAATCATGGTAT  730
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTGCAAATGAAAAGACCTCAATAAAAATAATATTTACAATCATGGTAT  747

seq1  CTAAATTTCAGAGTGTAAATTTAACATCTATGGAAAGAAGAGTTGTAAGT  780
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAAATTTCAGAGTGTAAATTTAACATCTATGGAAAGAAGAGTTGTAAGT  797

seq1  GGCCTGAGGAAATGACTTAAGAGTGGTTCGTCAAGAGTAGATATTTAAAT  830
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCCTGAGGAAATGACTTAAGAGTGGTTCGTCAAGAGTAGATATTTAAAT  847

seq1  GGGCTCAGTTTTTCTTGGCCAGTGTCAGCCAACTGGCTGTACCATCTTGA  880
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGCTCAGTTTTTCTTGGCCAGTGTCAGCCAACTGGCTGTACCATCTTGA  897

seq1  AGCTCTGGAGTAAGGTGCCCCATCTGTAGATGAGTTCAGTGGGACAAGTG  930
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCTCTGGAGTAAGGTGCCCCATCTGTAGATGAGTTCAGTGGGACAAGTG  947

seq1  CACCTCACCAATCATGCACTCGGGAAGAGAAGCAAGATTGTGCAGCTTTA  980
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACCTCACCAATCATGCACTCGGGAAGAGAAGCAAGATTGTGCAGCTTTA  997

seq1  CAGTGTCCTCATAGAAGAGAATCCAGAGGCCACTGAGCCAACTGGGAGGA  1030
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGTGTCCTCATAGAAGAGAATCCAGAGGCCACTGAGCCAACTGGGAGGA  1047

seq1  GGAAGCAGGGTGTGAGGTCTCCATGACAACAGAGCTTCAGCACCATCCAG  1080
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAAGCAGGGTGTGAGGTCTCCATGACAACAGAGCTTCAGCACCATCCAG  1097

seq1  AGCTGGATGCCAAAAGAATTC  1101
      |||||||||||||||||||||
seq2  AGCTGGATGCCAAAAGAATTC  1118


seq1: chr5_7117487_7118036
seq2: B6Ng01-216N06.g_68_617

seq1  GAATTCCAAGTTCTCCAATACCTCTTACTTCCTTCGATATTCAGAATTCC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCAAGTTCTCCAATACCTCTTACTTCCTTCGATATTCAGAATTCC  50

seq1  ATTTTATTTTTTTACTGGAAATTTTTTATTTACATTTCAAATGTTATCCC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTTATTTTTTTACTGGAAATTTTTTATTTACATTTCAAATGTTATCCC  100

seq1  CTTTCCTGGTTTCCCCCCAGAAAACCCCCTATACCATCTCTCCTCCCCCT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTCCTGGTTTCCCCCCAGAAAACCCCCTATACCATCTCTCCTCCCCCT  150

seq1  TCTTCTATGTTCCCAAACCACCCACCCACTCCTGCCTCCTTGCCCTTCAT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTCTATGTTCCCAAACCACCCACCCACTCCTGCCTCCTTGCCCTTCAT  200

seq1  TCCCCTACACGGGGGCATCAAGCCTTCACAGAACAAAGGGCCTCTCCTCC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCCCTACACGGGGGCATCAAGCCTTCACAGAACAAAGGGCCTCTCCTCC  250

seq1  CATTGATGTTCAACAAGGCCACACTCTGCTACATATCCAGTTGGAGCCAT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTGATGTTCAACAAGGCCACACTCTGCTACATATCCAGTTGGAGCCAT  300

seq1  GCGTCCCTCCATGTGTAGTTTTTGGTTGGTGGTTTAGTCCCTGGGAGCTC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCGTCCCTCCATGTGTAGTTTTTGGTTGGTGGTTTAGTCCCTGGGAGCTC  350

seq1  TGGGGGTCTGGTTGGTTGATATTGTTCTTCCTATGGGGTTGAAAAGCCAT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGGGGTCTGGTTGGTTGATATTGTTCTTCCTATGGGGTTGAAAAGCCAT  400

seq1  TTAGAGCCTGCAGTCTTTTCTCTAACTCCTCTATTAGGGACCTCATGCTC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAGAGCCTGCAGTCTTTTCTCTAACTCCTCTATTAGGGACCTCATGCTC  450

seq1  AGTCCAATGGTTGGCTATGAGCATCCTCTTCTATATTTGTCAGAGCCTCT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTCCAATGGTTGGCTATGAGCATCCTCTTCTATATTTGTCAGAGCCTCT  500

seq1  CATGAGACAGTTATATCAACAAGCACTTCTTGGTATCCAAAATAGTGTCT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGAGACAGTTATATCAACAAGCACTTCTTGGTATCCAAAATAGTGTCT  550


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