BAC Information

Click to search

BAC

Clone NameB6Ng01-216P23
Chromosome5 (Build37)
Map Location 13,920,099 - 14,055,465
singlet/doubletdoublet
Overlap geneSema3e
Upstream geneLOC433845, LOC625989, LOC670717, Sema3a, LOC208055, LOC626053, Speer3, EG626067, LOC668085, LOC384149, LOC384148
Downstream geneLOC100042957, Pclo, ENSMUSG00000033219, LOC624245, Speer8-ps1, Speer4c
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-216P23.bB6Ng01-216P23.g
ACCGA033535GA033536
length1,064778
definitionB6Ng01-216P23.b B6Ng01-216P23.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(13,920,099 - 13,921,155)(14,054,693 - 14,055,465)
sequence
gaattcttggttaaggaagttcagcacaaaaggctcagcttctggcctta
atcaaggtatctcacgggaggaaggggaaagccatccctgcgtacatgga
cagtcagtatgcatttgcccatgccccaggcctattgaaccctccagaaa
aagagaaggagttcctaatgtcagccaaaacaagaaaattaaaaatgaag
aagaaatcttggctctactggaggccatttggcttccaagagaggtagca
ggagtccactgtgaagggtaacagaaggaatccccagaagctccagggaa
aggggagcagacttgtctacccatcagtagagctttgccagatattgggt
accctgcttgaacctgaaatgtaccagaacccaacctatacacaaagaca
cgaagtgaaggaaaatgagagatgccaaactggaggccaatggatgttgg
ttcttgttggacaagggatccatactccctgctattgttgaagacagatg
gttaccaagctccaccaggacacccgaaaactgccagttattcaggccca
aacattacaatgagtttgggttacctctttccctggactgtgacaatggt
ctagccttcacagacaaagattcctaaatctagcaaagacactaagtgtt
cattgaaaagacctaatacaccgaaatctgtagttctggcactggccctt
aatatactaatcttgttttttggcttctggttggttggtttgtttgtttg
tttgtctgtttgtttgtttttgcttctggctaactgtcttgctaaataag
atgtgtcaacctagggtatggctatttgtgcttaaagaccatccccgaga
aagactttggaatggcacctggttcccaaaatccagtgttattcacaagc
cctaattaagaactttttattgggctttaaaccagtgtctaagcaatctt
tctctgttggaaagctcacaacattcacttgggtgagttactttgccaga
ctagtttctgggaagtttgagaacatttactaaagtaccgttcagcttat
tttgttgtcttata

gaattccctggatatggagttataaaagtcttgtgagtctcctaatgctg
atggtaggattcaaatcggttttcacaatagaaatatgtgttcttaactg
ctgagcaattaaccaatcccagcaattatctcgataagcctttagataca
aacaggagtggcagaaagagctaaatggagtaaattaaaaacttcaatgg
ttcatccttattattatctttatgtagaaaattccaaatctataattttt
agtctgctactttaatatgcaatgaaatataaattggtttattcattcgt
gtgtgtgtgtgtgtgtgtgtgtgtgtgtttgactaatgcctttaattcta
gtacttcagaggcagagcctgagggaactctgtgagttcaaggctagcct
ggtctatattgtgaattccaggccagataggaatacacagtaagatcctg
ttttaaagaaaacacataaaccagaaacagaagtttgtcagtgatcaaag
tgagaaatccacaggcccttcctgagaaactgacttggaagctaatttcc
aaaggctgagggggacctaaggaaagagaaagggtggtgaggagacttaa
gtaaagccacaaggaagcatttccccctagggtacagtggcagacttatt
gggaaaggctggtgaaatggcaccaggcatctcagcaagcagggccttgg
gaatcactttaggggcttttatcctgggaacaatcagaagctctttggaa
gcgctactcagaagtacagaatacgcag
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr5_13920099_13921155
seq2: B6Ng01-216P23.b_43_1106

seq1  GAATTCTTGGTTAAGGAAGTTCAGCACAAAAGGCTCAGCTTCTGGCCTTA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTTGGTTAAGGAAGTTCAGCACAAAAGGCTCAGCTTCTGGCCTTA  50

seq1  ATCAAGGTATCTCACGGGAGGAAGGGGAAAGCCATCCCTGCGTACATGGA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCAAGGTATCTCACGGGAGGAAGGGGAAAGCCATCCCTGCGTACATGGA  100

seq1  CAGTCAGTATGCATTTGCCCATGCCCCAGGCCTATTGAACCCTCCAGAAA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGTCAGTATGCATTTGCCCATGCCCCAGGCCTATTGAACCCTCCAGAAA  150

seq1  AAGAGAAGGAGTTCCTAATGTCAGCCAAAACAAGAAAATTAAAAATGAAG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGAGAAGGAGTTCCTAATGTCAGCCAAAACAAGAAAATTAAAAATGAAG  200

seq1  AAGAAATCTTGGCTCTACTGGAGGCCATTTGGCTTCCAAGAGAGGTAGCA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGAAATCTTGGCTCTACTGGAGGCCATTTGGCTTCCAAGAGAGGTAGCA  250

seq1  GGAGTCCACTGTGAAGGGTAACAGAAGGAATCCCCAGAAGCTCCAGGGAA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAGTCCACTGTGAAGGGTAACAGAAGGAATCCCCAGAAGCTCCAGGGAA  300

seq1  AGGGGAGCAGACTTGTCTACCCATCAGTAGAGCTTTGCCAGATATTGGGT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGGGAGCAGACTTGTCTACCCATCAGTAGAGCTTTGCCAGATATTGGGT  350

seq1  ACCCTGCTTGAACCTGAAATGTACCAGAACCCAACCTATACACAAAGACA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCCTGCTTGAACCTGAAATGTACCAGAACCCAACCTATACACAAAGACA  400

seq1  CGAAGTGAAGGAAAATGAGAGATGCCAAACTGGAGGCCAATGGATGTTGG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGAAGTGAAGGAAAATGAGAGATGCCAAACTGGAGGCCAATGGATGTTGG  450

seq1  TTCTTGTTGGACAAGGGATCCATACTCCCTGCTATTGTTGAAGACAGATG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTTGTTGGACAAGGGATCCATACTCCCTGCTATTGTTGAAGACAGATG  500

seq1  GTTACCAAGCTCCACCAGGACACCCGAAAACTGCCAGTTATTCAGGCCCA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTACCAAGCTCCACCAGGACACCCGAAAACTGCCAGTTATTCAGGCCCA  550

seq1  AACATTACAATGAGTTTGGGTTACCTCTTTCCCTGGACTGTGACAATGGT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACATTACAATGAGTTTGGGTTACCTCTTTCCCTGGACTGTGACAATGGT  600

seq1  CTAGCCTTCACAGACAAAGATTCCTAAATCTAGCAAAGACACTAAGTGTT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAGCCTTCACAGACAAAGATTCCTAAATCTAGCAAAGACACTAAGTGTT  650

seq1  CATTGAAAAGACCTAATACACCGAAATCTGTAGTTCTGGCACTGGCCCTT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTGAAAAGACCTAATACACCGAAATCTGTAGTTCTGGCACTGGCCCTT  700

seq1  AATATACTAATCTTGTTTTTTGGCTTCTGGTTGGTTGGTTTGTTTGTTTG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATATACTAATCTTGTTTTTTGGCTTCTGGTTGGTTGGTTTGTTTGTTTG  750

seq1  TTTGTCTGTTTGTTTGTTTTTGCTTCTGGCTAACTGTTCTTGCTAAATAA  800
      |||||||||||||||||||||||||||||||||||| |||||||||||||
seq2  TTTGTCTGTTTGTTTGTTTTTGCTTCTGGCTAACTG-TCTTGCTAAATAA  799

seq1  GATGTGTCAACCTAGGGTATGGCTA-TTGTGCTTAAAAGACCATCCCCGA  849
      ||||||||||||||||||||||||| |||||||| |||||||||||||||
seq2  GATGTGTCAACCTAGGGTATGGCTATTTGTGCTT-AAAGACCATCCCCGA  848

seq1  GAAAGAC-TTGGAATGGCACCTGGTTCCCAAAATCCAGTG-TAATCACAA  897
      ||||||| |||||||||||||||||||||||||||||||| || ||||||
seq2  GAAAGACTTTGGAATGGCACCTGGTTCCCAAAATCCAGTGTTATTCACAA  898

seq1  G-CCTAA-TAAGAACTTTTTATTGG--CTTAAACCAGTGTCTAAGCAATC  943
      | ||||| |||||||||||||||||   ||||||||||||||||||||||
seq2  GCCCTAATTAAGAACTTTTTATTGGGCTTTAAACCAGTGTCTAAGCAATC  948

seq1  -TTCTCTGGTGGAAAGCTCACAACATTTCATTTGGGTGAG-TAC-TTGCC  990
       ||||||| |||||||||||||||| |||| ||||||||| ||| |||||
seq2  TTTCTCTGTTGGAAAGCTCACAACA-TTCACTTGGGTGAGTTACTTTGCC  997

seq1  AGAACAAGTTTCTGTGGAGGTTAGAGAACATTATCTTAAAATA-CGTTCA  1039
      || || |||||||| ||| ||| ||||||||| |  |||| || ||||||
seq2  AG-ACTAGTTTCTG-GGAAGTTTGAGAACATT-TACTAAAGTACCGTTCA  1044

seq1  GCT--ATTTGTTGTCCTATA  1057
      |||   ||||||||| ||||
seq2  GCTTATTTTGTTGTCTTATA  1064


seq1: chr5_14054693_14055465
seq2: B6Ng01-216P23.g_65_842 (reverse)

seq1  CTGCGTA-TCTGTACTTCTGAGTAGCGCTTCC-AAGGGCTTCTGATTGTT  48
      ||||||| |||||||||||||||||||||||| ||| |||||||||||||
seq2  CTGCGTATTCTGTACTTCTGAGTAGCGCTTCCAAAGAGCTTCTGATTGTT  50

seq1  CCCAGGATAAAAGCCCCTAAAGTGATTCCCAAGGCCCTGCTTGCTGAGAT  98
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCAGGATAAAAGCCCCTAAAGTGATTCCCAAGGCCCTGCTTGCTGAGAT  100

seq1  GCCTGGTGCCATTTCACCAGCC-TTCCCAAT-AGTCTGCCACTGTACCCT  146
      |||||||||||||||||||||| |||||||| ||||||||||||||||||
seq2  GCCTGGTGCCATTTCACCAGCCTTTCCCAATAAGTCTGCCACTGTACCCT  150

seq1  AGGGGGAAATGCTTCCTTGTGGCTTTACTT-AGTCTCCTCACCACCCTTT  195
      |||||||||||||||||||||||||||||| |||||||||||||||||||
seq2  AGGGGGAAATGCTTCCTTGTGGCTTTACTTAAGTCTCCTCACCACCCTTT  200

seq1  CTCTTTCCTTAGGTCCCCCTCAGCCTTTGGAAATTAGCTTCCAAGTCAGT  245
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTTTCCTTAGGTCCCCCTCAGCCTTTGGAAATTAGCTTCCAAGTCAGT  250

seq1  TTCTCAGGAAGGGCCTGTGGATTTCTCACTTTGATCACTGACAAACTTCT  295
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTCAGGAAGGGCCTGTGGATTTCTCACTTTGATCACTGACAAACTTCT  300

seq1  GTTTCTGGTTTATGTGTTTTCTTTAAAACAGGATCTTACTGTGTATTCCT  345
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTCTGGTTTATGTGTTTTCTTTAAAACAGGATCTTACTGTGTATTCCT  350

seq1  ATCTGGCCTGGAATTCACAATATAGACCAGGCTAGCCTTGAACTCACAGA  395
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTGGCCTGGAATTCACAATATAGACCAGGCTAGCCTTGAACTCACAGA  400

seq1  GTTCCCTCAGGCTCTGCCTCTGAAGTACTAGAATTAAAGGCATTAGTCAA  445
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTCCCTCAGGCTCTGCCTCTGAAGTACTAGAATTAAAGGCATTAGTCAA  450

seq1  ACACACACACACACACACACACACACACACGAATGAATAAACCAATTTAT  495
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACACACACACACACACACACACACACACGAATGAATAAACCAATTTAT  500

seq1  ATTTCATTGCATATTAAAGTAGCAGACTAAAAATTATAGATTTGGAATTT  545
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTCATTGCATATTAAAGTAGCAGACTAAAAATTATAGATTTGGAATTT  550

seq1  TCTACATAAAGATAATAATAAGGATGAACCATTGAAGTTTTTAATTTACT  595
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTACATAAAGATAATAATAAGGATGAACCATTGAAGTTTTTAATTTACT  600

seq1  CCATTTAGCTCTTTCTGCCACTCCTGTTTGTATCTAAAGGCTTATCGAGA  645
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCATTTAGCTCTTTCTGCCACTCCTGTTTGTATCTAAAGGCTTATCGAGA  650

seq1  TAATTGCTGGGATTGGTTAATTGCTCAGCAGTTAAGAACACATATTTCTA  695
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATTGCTGGGATTGGTTAATTGCTCAGCAGTTAAGAACACATATTTCTA  700

seq1  TTGTGAAAACCGATTTGAATCCTACCATCAGCATTAGGAGACTCACAAGA  745
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTGAAAACCGATTTGAATCCTACCATCAGCATTAGGAGACTCACAAGA  750

seq1  CTTTTATAACTCCATATCCAGGGAATTC  773
      ||||||||||||||||||||||||||||
seq2  CTTTTATAACTCCATATCCAGGGAATTC  778


| Home | SequenceCutter | Blast | Download |