BAC Information

Click to search

BAC

Clone NameB6Ng01-220K21
Chromosome5 (Build37)
Map Location 61,253,402 - 61,389,283
singlet/doubletdoublet
Overlap geneLOC666597
Upstream geneLOC546866, Cbfa2t2-ps1, LOC100041498
Downstream geneEG666610, LOC100041524, G6pd2, LOC100041543
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-220K21.bB6Ng01-220K21.g
ACCGA036177GA036178
length1,1001,144
definitionB6Ng01-220K21.b B6Ng01-220K21.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(61,253,402 - 61,254,502)(61,388,122 - 61,389,283)
sequence
gaattcttactgcttcctctgaataacattttcattttgttgtatatggc
atcttggaattctttagttgcaagagtactacttgtgtcttgtagtaaat
atgagtaatcgcaatgcttaacaattgtattcctttaaatctagttatat
taaagaaacaggaaggaaacagcttacttcggaagaaagcactaaatcac
tccattttcactatttatgtaacaaagcacacacaactgtttcataactc
tgtgaacatctatctacaatcaaattcctgaaggacactgtatagaagtt
gaagaatattattcgacatgaaagaagagtgttttatttcttttggtttt
actatttgatttctcaccctaatcttacaatggaaggttaatatttttta
cattgaaattctgaaattagctgagatttcatacttgaattctattacaa
tgaacagacccttctcatatatacgttattgtgtgttttgctcacatgaa
ggttgattgtttctaaatgttatttgtaagtctgcatcatttaatccata
aatcttaaccaagttgtgagagttcatgacctggctaactgaaggcacgc
tcacattacgccatggaaaaagtaaggaaaataattattcctttaacaag
atactgtgcttttccttctctgaatgaatttctactctactctacatctt
ttcttgcagggctgcaggcatgatgccccctatctctgcctggttctctg
gattgctgggaaaagcacactattcatgttcttttacctaaattatcgat
ttggtttttttctcataaacacatctgaatctaccatatgattgtctgtt
accatgtgtttgatgtgcatgccagaacaacatggcctttttaaactttc
tttgctccacctttcctctgggaattatcaaccttatattatgcataatt
ccatagccactcaaatttatgctcatcagctctaaaaaataagcttatgt
attaggtttagtaatggactgattgaacaagcatagccgtatatcattat
tttattgcctttgtcctttacataatataataataatatatattataata


gaattcatggaaagtgcactagctacttaggaacccttaattaagaagtg
taaacatgttagacagaaactaataataataaacaaattgcaggcaagaa
gtctgtaaccagcaaactactattcagaacataaaatatatgtctcaaat
gccattgcctctttctccctaatgaaataatataaacatatatgtaaaat
cattcattacaagcatttgacttataagctattttaatgaagtgcttcaa
attgaaaagaaaagaaatttaaaatcactcaagtccaaagaatttaaacg
tattataaagttcaactaatgaaaaataataaacattgtttctcatgata
gttttctaatcatgactatcaagtttttgctactgaaatgttatatatta
gtaaattattgactatatcacatactattgtaccacacatgaaaatccta
agacaaaataagggagataaattatttcagtgaaagaatttatgatcagg
actgcagtctagaaatttattgttgatgtttacgttgaattatggttgct
cagaaagaacacttgtggtcatgactgtgtgagcacaattttgaaaaaaa
tctgaaatgtaaataagacaaattcataaatgagatcatcacatgacaat
gagataggactattggatagttaatcatcaaaacattgtgcttaaggaaa
ataatttctcttaaaagcaaagaaatattatttgactattgtaaatatgt
aaaaactgtccaattaattttatggctgtgtatgtgtaaattatttctaa
attccaaatgctgtaaaaagaatgtttgaacacttgtacttatttgaagt
tatatacaaataagtgggcgtgttatgggtcgggggttgcccagatataa
acaatctgacagtgttatcactgttactattttagtaaaaagaaacattt
tattctgatactgaccggagattgattagcttcagactgtacctgaaaat
gttctcatagcagactctagtcatatcagcccaggctataaggcagatta
cccagatgtatttatctgttgtatgcagaacaagggctaatcctaccata
tgcttggattgtcctgatcatcctgatggagtatgacgatgatt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr5_61253402_61254502
seq2: B6Ng01-220K21.b_48_1147

seq1  GAATTCTTACTGCTTCCTCTGAATAACATTTTCATTTTGTTGTATATGGC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTTACTGCTTCCTCTGAATAACATTTTCATTTTGTTGTATATGGC  50

seq1  ATCTTGGAATTCTTTAGTTGCAAGAGTACTACTTGTGTCTTGTAGTAAAT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTTGGAATTCTTTAGTTGCAAGAGTACTACTTGTGTCTTGTAGTAAAT  100

seq1  ATGAGTAATCGCAATGCTTAACAATTGTATTCCTTTAAATCTAGTTATAT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGAGTAATCGCAATGCTTAACAATTGTATTCCTTTAAATCTAGTTATAT  150

seq1  TAAAGAAACAGGAAGGAAACAGCTTACTTCGGAAGAAAGCACTAAATCAC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAAGAAACAGGAAGGAAACAGCTTACTTCGGAAGAAAGCACTAAATCAC  200

seq1  TCCATTTTCACTATTTATGTAACAAAGCACACACAACTGTTTCATAACTC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCATTTTCACTATTTATGTAACAAAGCACACACAACTGTTTCATAACTC  250

seq1  TGTGAACATCTATCTACAATCAAATTCCTGAAGGACACTGTATAGAAGTT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGAACATCTATCTACAATCAAATTCCTGAAGGACACTGTATAGAAGTT  300

seq1  GAAGAATATTATTCGACATGAAAGAAGAGTGTTTTATTTCTTTTGGTTTT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGAATATTATTCGACATGAAAGAAGAGTGTTTTATTTCTTTTGGTTTT  350

seq1  ACTATTTGATTTCTCACCCTAATCTTACAATGGAAGGTTAATATTTTTTA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTATTTGATTTCTCACCCTAATCTTACAATGGAAGGTTAATATTTTTTA  400

seq1  CATTGAAATTCTGAAATTAGCTGAGATTTCATACTTGAATTCTATTACAA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTGAAATTCTGAAATTAGCTGAGATTTCATACTTGAATTCTATTACAA  450

seq1  TGAACAGACCCTTCTCATATATACGTTATTGTGTGTTTTGCTCACATGAA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAACAGACCCTTCTCATATATACGTTATTGTGTGTTTTGCTCACATGAA  500

seq1  GGTTGATTGTTTCTAAATGTTATTTGTAAGTCTGCATCATTTAATCCATA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTTGATTGTTTCTAAATGTTATTTGTAAGTCTGCATCATTTAATCCATA  550

seq1  AATCTTAACCAAGTTGTGAGAGTTCATGACCTGGCTAACTGAAGGCACGC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATCTTAACCAAGTTGTGAGAGTTCATGACCTGGCTAACTGAAGGCACGC  600

seq1  TCACATTACGCCATGGAAAAAGTAAGGAAAATAATTATTCCTTTAACAAG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCACATTACGCCATGGAAAAAGTAAGGAAAATAATTATTCCTTTAACAAG  650

seq1  ATACTGTGCTTTTCCTTCTCTGAATGAATTTCTACTCTACTCTACATCTT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATACTGTGCTTTTCCTTCTCTGAATGAATTTCTACTCTACTCTACATCTT  700

seq1  TTCTTGCAGGGCTGCAGGCATGATGCCCCCTATCTCTGCCTGGTTCTCTG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTTGCAGGGCTGCAGGCATGATGCCCCCTATCTCTGCCTGGTTCTCTG  750

seq1  GATTGCTGGGAAAAGCACACTATTCATGTTCTTTTACCTAAATTATCGAT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATTGCTGGGAAAAGCACACTATTCATGTTCTTTTACCTAAATTATCGAT  800

seq1  TTGGTTTTTTTCTCATAAACACATCTGAATCTACCATATGATTGTCTGTT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGGTTTTTTTCTCATAAACACATCTGAATCTACCATATGATTGTCTGTT  850

seq1  ACCATGTGTTTGATGTGCATGCCAGAACAACATGGCCTTTTTAAACTTTC  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCATGTGTTTGATGTGCATGCCAGAACAACATGGCCTTTTTAAACTTTC  900

seq1  TTTGCTCCAACCTTTCCTCTGGGAAATTATCAACCTTATATTATGCATAA  950
      |||||||| |||||||||||||| ||||||||||||||||||||||||||
seq2  TTTGCTCC-ACCTTTCCTCTGGG-AATTATCAACCTTATATTATGCATAA  948

seq1  TTCCATAGCCACTCAAATTTATGCTCATCAGCTCTAAAAAAATAAGCTTA  1000
      ||||||||||||||||||||||||||||||||||| ||||||||||||||
seq2  TTCCATAGCCACTCAAATTTATGCTCATCAGCTCT-AAAAAATAAGCTTA  997

seq1  TGTAATTAGGTTTAAGTAATGGACTGATTG-ACAAGCATAGCCGTATATC  1049
      ||| ||||||||| |||||||||||||||| |||||||||||||||||||
seq2  TGT-ATTAGGTTT-AGTAATGGACTGATTGAACAAGCATAGCCGTATATC  1045

seq1  ATTAATTTTATTGCTATGTTCCTTTAACATA--ATAATAATAATA---AT  1094
      ||| ||||||||||  |  |||||| |||||  ||||||||||||   ||
seq2  ATT-ATTTTATTGCCTTTGTCCTTT-ACATAATATAATAATAATATATAT  1093

seq1  AATAATA  1101
       ||||||
seq2  TATAATA  1100


seq1: chr5_61388122_61389283
seq2: B6Ng01-220K21.g_65_1208 (reverse)

seq1  AATCATCCTTCATAACTCCATTTAAAGAGATGATCAGGACAATTACAAGC  50
      |||||| | |||| |||||||    || |||||||||||||| | |||||
seq2  AATCAT-CGTCAT-ACTCCAT---CAG-GATGATCAGGACAA-TCCAAGC  43

seq1  CATATGTGTTGGGATAAGCCCCTG-TCTGCAATAC-ACAGAATAAATACA  98
         || || | |||| ||||| || ||||| |||| |||| |||||||| 
seq2  ---ATATGGTAGGATTAGCCCTTGTTCTGC-ATACAACAG-ATAAATAC-  87

seq1  ATCTTGTGTAATCTGCCTTTATAAGCCCTGGGCTGATATGACTAGAGTCT  148
      ||| || |||||||||| |||||   ||||||||||||||||||||||||
seq2  ATC-TGGGTAATCTGCC-TTATA--GCCTGGGCTGATATGACTAGAGTCT  133

seq1  GCCTATTGAGAACATTTTCAGGTACAGTCCTGAAGCTAATCAATTCTCCG  198
      | ||| |||||||||||||||||||||| |||||||||||||| ||||||
seq2  G-CTA-TGAGAACATTTTCAGGTACAGT-CTGAAGCTAATCAA-TCTCCG  179

seq1  GTCAGTATCAGAAT-AAATGTTTCTTTTTACTAAAATAGTAACAGTGATA  247
      |||||||||||||| |||||||||||||||||||||||||||||||||||
seq2  GTCAGTATCAGAATAAAATGTTTCTTTTTACTAAAATAGTAACAGTGATA  229

seq1  ACACTGTCAGATTGTTTATATCTGGGCAACCCCCGACCCATAACACGCCC  297
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACTGTCAGATTGTTTATATCTGGGCAACCCCCGACCCATAACACGCCC  279

seq1  ACTTATTTGTATATAACTTCAAATAAGTACAAGTGTTCAAACATTCTTTT  347
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTATTTGTATATAACTTCAAATAAGTACAAGTGTTCAAACATTCTTTT  329

seq1  TACAGCATTTGGAATTTAGAAATAATTTACACATACACAGCCATAAAATT  397
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACAGCATTTGGAATTTAGAAATAATTTACACATACACAGCCATAAAATT  379

seq1  AATTGGACAGTTTTTACATATTTACAATAGTCAAATAATATTTCTTTGCT  447
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTGGACAGTTTTTACATATTTACAATAGTCAAATAATATTTCTTTGCT  429

seq1  TTTAAGAGAAATTATTTTCCTTAAGCACAATGTTTTGATGATTAACTATC  497
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTAAGAGAAATTATTTTCCTTAAGCACAATGTTTTGATGATTAACTATC  479

seq1  CAATAGTCCTATCTCATTGTCATGTGATGATCTCATTTATGAATTTGTCT  547
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAATAGTCCTATCTCATTGTCATGTGATGATCTCATTTATGAATTTGTCT  529

seq1  TATTTACATTTCAGATTTTTTTCAAAATTGTGCTCACACAGTCATGACCA  597
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTTACATTTCAGATTTTTTTCAAAATTGTGCTCACACAGTCATGACCA  579

seq1  CAAGTGTTCTTTCTGAGCAACCATAATTCAACGTAAACATCAACAATAAA  647
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAGTGTTCTTTCTGAGCAACCATAATTCAACGTAAACATCAACAATAAA  629

seq1  TTTCTAGACTGCAGTCCTGATCATAAATTCTTTCACTGAAATAATTTATC  697
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCTAGACTGCAGTCCTGATCATAAATTCTTTCACTGAAATAATTTATC  679

seq1  TCCCTTATTTTGTCTTAGGATTTTCATGTGTGGTACAATAGTATGTGATA  747
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCCTTATTTTGTCTTAGGATTTTCATGTGTGGTACAATAGTATGTGATA  729

seq1  TAGTCAATAATTTACTAATATATAACATTTCAGTAGCAAAAACTTGATAG  797
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGTCAATAATTTACTAATATATAACATTTCAGTAGCAAAAACTTGATAG  779

seq1  TCATGATTAGAAAACTATCATGAGAAACAATGTTTATTATTTTTCATTAG  847
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATGATTAGAAAACTATCATGAGAAACAATGTTTATTATTTTTCATTAG  829

seq1  TTGAACTTTATAATACGTTTAAATTCTTTGGACTTGAGTGATTTTAAATT  897
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGAACTTTATAATACGTTTAAATTCTTTGGACTTGAGTGATTTTAAATT  879

seq1  TCTTTTCTTTTCAATTTGAAGCACTTCATTAAAATAGCTTATAAGTCAAA  947
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTTTCTTTTCAATTTGAAGCACTTCATTAAAATAGCTTATAAGTCAAA  929

seq1  TGCTTGTAATGAATGATTTTACATATATGTTTATATTATTTCATTAGGGA  997
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTTGTAATGAATGATTTTACATATATGTTTATATTATTTCATTAGGGA  979

seq1  GAAAGAGGCAATGGCATTTGAGACATATATTTTATGTTCTGAATAGTAGT  1047
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAAGAGGCAATGGCATTTGAGACATATATTTTATGTTCTGAATAGTAGT  1029

seq1  TTGCTGGTTACAGACTTCTTGCCTGCAATTTGTTTATTATTATTAGTTTC  1097
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGCTGGTTACAGACTTCTTGCCTGCAATTTGTTTATTATTATTAGTTTC  1079

seq1  TGTCTAACATGTTTACACTTCTTAATTAAGGGTTCCTAAGTAGCTAGTGC  1147
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTCTAACATGTTTACACTTCTTAATTAAGGGTTCCTAAGTAGCTAGTGC  1129

seq1  ACTTTCCATGAATTC  1162
      |||||||||||||||
seq2  ACTTTCCATGAATTC  1144


| Home | SequenceCutter | Blast | Download |