BAC Information

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BAC

Clone NameB6Ng01-221E05
Chromosome5 (Build37)
Map Location 151,945,380 - 152,099,682
singlet/doubletdoublet
Overlap geneStard13, LOC630708
Upstream geneLOC667470, Fry, LOC100042068, Gm5, XM_359419, Brca2, B230342M21Rik, BC037393, Aprin, LOC100040180, Kl, LOC667510
Downstream geneLOC625175, LOC100042166, EG435877, EG632649, EG632671, Rfc3
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-221E05.bB6Ng01-221E05.g
ACCGA036601GA036602
length1,0441,047
definitionB6Ng01-221E05.b B6Ng01-221E05.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(152,098,652 - 152,099,682)(151,945,380 - 151,946,415)
sequence
gaattcctagactttgctttcatagcacagctatttgagaaaatctgtca
tatagcacaccttttagctaaaaatttctccagccttctctgaactcatg
ctgggaaaacacggcttcattgctaggcagagccttcccatgaggctgtg
cttaaactattttgaattctaattcaaggacaataataaaaatttagaat
gtttaataggaaatattataaaaatttactccaccaactgtattctggtt
gagactctttttaaagcactacttcttaaaacaatactataattacagtt
tttaatgcttcaaaatgctttcttctccccatgtatgacttgtgcaaacc
cttttaaaaatatttttgaaatataatccacccacaacagagtcagttag
acttaacttacttgggccaaagtcaatgtgtaatttttagtatcttgtat
ttgccaaaggaaatgggtttgtggtggtgatgtgtgatcagcctttttca
ctggttaccattgagatgttctgcaatatttaaatcagagtcactgctga
atgcaacccattgagtttgagccggcaggtggggtctgggcaaaggagag
cgtaaatacagaaatggcttctgcgtttgcccaacatcttgtttacactg
ggattttatctgtgtttctggctttagaggtttatatgaggacattaggg
acaaatgggtcctttgtgtttcatgagcagcaggtgttgaggctgctttc
gagtttgactggtcctatagtagttaatttatttattgatttggtttgag
caagacaagcactgagggttagagtcttctcaataatggatttatctcag
tgtttcttttaatacagactgctctctattttaatttagcagtagatatg
taattaaagatttggtgttaagtttagacttttaatattcacttatatgt
atgatggttttgcctgccgtggatgtctgtgtagtctatgtattccagtg
cttatgggcgatcagaagaggaaaatttagaagcccccgaaact
gaattcaaaagacatacaagagacagggccctgggcctgcgggaaagtaa
acagaatagcaatctaagacagatggtctggaaagggacttcttaaatag
cgacaacagggcagtaaacagaggtcagtgagctacagcccaggagtgcc
aagaagacatggactgaatggtccctgaggtgaaggacaatcaattgcag
gaggggactgagtgacctagacgaggtgcttaccatgtctgccaggcgag
cacagcttgctgggctgtgcatatgggggaaattactagaagaaatgagg
tgtcctgtgacagtctgcaggcagccttgctaccagctccccaaataggg
ccttctcagtgcctcctcggacaaacaagacaaaaacatcctaagcaccc
cgtgcacaggagtctctttgcagaagtggcctgctttccactaggctcag
ttaattagcaggagagtcggacagagtggaaagaaagagccttttgtttg
gagaacctgtgaaaatatcccctcagaagcctgtaactttccctacagat
ttaccctggccctgaggacaagccccggtgccagaaggcactgctgtccc
ctccacacagcccacattcaaaaggcagttagttctctttgtttgtcccc
agggagtcaagccttaatgggttttacaatgtggcaggctcttttggaga
gtgtctgctgccagaatcagggcagagagaaccccagtgagtgcctcaga
tgttgaggtgaccctgcctgcactctaagggaagcagcactcaccccagg
ccttgagaacccctgcaagagcaccctgagaggtcatgggatctgaaagt
gaaatctgccattattgcgagcagatggccgaagacctggagacttcact
cttcagacaggactgtggagcatcagttgtccctctataatctatcccag
gtgagaagagtcactgcttgttgtgacatcacccttgggtttcagttaat
cttgctgtcaagaagtgaccccctctttctccaaccctctaatgtag
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr5_152098652_152099682
seq2: B6Ng01-221E05.b_46_1089 (reverse)

seq1  AGTTTCAGGGGCTTCTAA--TTTCCTCTTCTGATCG-CCATAGGCACTGG  47
      |||||| |||||||||||  |||||||||||||||| ||||| |||||||
seq2  AGTTTCGGGGGCTTCTAAATTTTCCTCTTCTGATCGCCCATAAGCACTGG  50

seq1  -ATACATAGACTACACAGACATCCAC-GCAGGCAAAACATTCATACATAT  95
       ||||||||||||||||||||||||| |||||||||||  ||||||||||
seq2  AATACATAGACTACACAGACATCCACGGCAGGCAAAACCATCATACATAT  100

seq1  AAGTGAATATTAAAAGTCTAAAC-TAACA-CAAATCTT--AATACATATC  141
      ||||||||||||||||||||||| ||||| ||||||||  | ||||||||
seq2  AAGTGAATATTAAAAGTCTAAACTTAACACCAAATCTTTAATTACATATC  150

seq1  TACTGCTAAATTAAAATAGAGAGCAGTCTGTATTAAAAG-AACACTGAGA  190
      ||||||||||||||||||||||||||||||||||||||| ||||||||||
seq2  TACTGCTAAATTAAAATAGAGAGCAGTCTGTATTAAAAGAAACACTGAGA  200

seq1  TAAAT-CATTATTGAG-AGACTCTAACCCTCAGTGCTTGTCCTGCTC-AA  237
      ||||| |||||||||| |||||||||||||||||||||||| ||||| ||
seq2  TAAATCCATTATTGAGAAGACTCTAACCCTCAGTGCTTGTCTTGCTCAAA  250

seq1  CCAAATCAATAAATAAATTAACTACTATAGGACCAGTCAAACTCGAAAGC  287
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAAATCAATAAATAAATTAACTACTATAGGACCAGTCAAACTCGAAAGC  300

seq1  AGCCTCAACACCTGCTGCTCATGAAACACAAAGGACCCATTTGTCCCTAA  337
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCCTCAACACCTGCTGCTCATGAAACACAAAGGACCCATTTGTCCCTAA  350

seq1  TGTCCTCATATAAACCTCTAAAGCCAGAAACACAGATAAAATCCCAGTGT  387
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTCCTCATATAAACCTCTAAAGCCAGAAACACAGATAAAATCCCAGTGT  400

seq1  AAACAAGATGTTGGGCAAACGCAGAAGCCATTTCTGTATTTACGCTCTCC  437
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACAAGATGTTGGGCAAACGCAGAAGCCATTTCTGTATTTACGCTCTCC  450

seq1  TTTGCCCAGACCCCACCTGCCGGCTCAAACTCAATGGGTTGCATTCAGCA  487
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGCCCAGACCCCACCTGCCGGCTCAAACTCAATGGGTTGCATTCAGCA  500

seq1  GTGACTCTGATTTAAATATTGCAGAACATCTCAATGGTAACCAGTGAAAA  537
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGACTCTGATTTAAATATTGCAGAACATCTCAATGGTAACCAGTGAAAA  550

seq1  AGGCTGATCACACATCACCACCACAAACCCATTTCCTTTGGCAAATACAA  587
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGCTGATCACACATCACCACCACAAACCCATTTCCTTTGGCAAATACAA  600

seq1  GATACTAAAAATTACACATTGACTTTGGCCCAAGTAAGTTAAGTCTAACT  637
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATACTAAAAATTACACATTGACTTTGGCCCAAGTAAGTTAAGTCTAACT  650

seq1  GACTCTGTTGTGGGTGGATTATATTTCAAAAATATTTTTAAAAGGGTTTG  687
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACTCTGTTGTGGGTGGATTATATTTCAAAAATATTTTTAAAAGGGTTTG  700

seq1  CACAAGTCATACATGGGGAGAAGAAAGCATTTTGAAGCATTAAAAACTGT  737
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACAAGTCATACATGGGGAGAAGAAAGCATTTTGAAGCATTAAAAACTGT  750

seq1  AATTATAGTATTGTTTTAAGAAGTAGTGCTTTAAAAAGAGTCTCAACCAG  787
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTATAGTATTGTTTTAAGAAGTAGTGCTTTAAAAAGAGTCTCAACCAG  800

seq1  AATACAGTTGGTGGAGTAAATTTTTATAATATTTCCTATTAAACATTCTA  837
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATACAGTTGGTGGAGTAAATTTTTATAATATTTCCTATTAAACATTCTA  850

seq1  AATTTTTATTATTGTCCTTGAATTAGAATTCAAAATAGTTTAAGCACAGC  887
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTTTTATTATTGTCCTTGAATTAGAATTCAAAATAGTTTAAGCACAGC  900

seq1  CTCATGGGAAGGCTCTGCCTAGCAATGAAGCCGTGTTTTCCCAGCATGAG  937
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCATGGGAAGGCTCTGCCTAGCAATGAAGCCGTGTTTTCCCAGCATGAG  950

seq1  TTCAGAGAAGGCTGGAGAAATTTTTAGCTAAAAGGTGTGCTATATGACAG  987
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCAGAGAAGGCTGGAGAAATTTTTAGCTAAAAGGTGTGCTATATGACAG  1000

seq1  ATTTTCTCAAATAGCTGTGCTATGAAAGCAAAGTCTAGGAATTC  1031
      ||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTTCTCAAATAGCTGTGCTATGAAAGCAAAGTCTAGGAATTC  1044

seq1: chr5_151945380_151946415
seq2: B6Ng01-221E05.g_69_1115

seq1  GAATTCAAAAGACATACAAGAGACAGGGCCCTGGGCCTGCGGGAAAGTAA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAAAAGACATACAAGAGACAGGGCCCTGGGCCTGCGGGAAAGTAA  50

seq1  ACAGAATAGCAATCTAAGACAGATGGTCTGGAAAGGGACTTCTTAAATAG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGAATAGCAATCTAAGACAGATGGTCTGGAAAGGGACTTCTTAAATAG  100

seq1  CGACAACAGGGCAGTAAACAGAGGTCAGTGAGCTACAGCCCAGGAGTGCC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGACAACAGGGCAGTAAACAGAGGTCAGTGAGCTACAGCCCAGGAGTGCC  150

seq1  AAGAAGACATGGACTGAATGGTCCCTGAGGTGAAGGACAATCAATTGCAG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGAAGACATGGACTGAATGGTCCCTGAGGTGAAGGACAATCAATTGCAG  200

seq1  GAGGGGACTGAGTGACCTAGACGAGGTGCTTACCATGTCTGCCAGGCGAG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGGGGACTGAGTGACCTAGACGAGGTGCTTACCATGTCTGCCAGGCGAG  250

seq1  CACAGCTTGCTGGGCTGTGCATATGGGGGAAATTACTAGAAGAAATGAGG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACAGCTTGCTGGGCTGTGCATATGGGGGAAATTACTAGAAGAAATGAGG  300

seq1  TGTCCTGTGACAGTCTGCAGGCAGCCTTGCTACCAGCTCCCCAAATAGGG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTCCTGTGACAGTCTGCAGGCAGCCTTGCTACCAGCTCCCCAAATAGGG  350

seq1  CCTTCTCAGTGCCTCCTCGGACAAACAAGACAAAAACATCCTAAGCACCC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTCTCAGTGCCTCCTCGGACAAACAAGACAAAAACATCCTAAGCACCC  400

seq1  CGTGCACAGGAGTCTCTTTGCAGAAGTGGCCTGCTTTCCACTAGGCTCAG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGTGCACAGGAGTCTCTTTGCAGAAGTGGCCTGCTTTCCACTAGGCTCAG  450

seq1  TTAATTAGCAGGAGAGTCGGACAGAGTGGAAAGAAAGAGCCTTTTGTTTG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAATTAGCAGGAGAGTCGGACAGAGTGGAAAGAAAGAGCCTTTTGTTTG  500

seq1  GAGAACCTGTGAAAATATCCCCTCAGAAGCCTGTAACTTTCCCTACAGA-  549
      ||||||||||||||||||||||||||||||||||||||||||||||||| 
seq2  GAGAACCTGTGAAAATATCCCCTCAGAAGCCTGTAACTTTCCCTACAGAT  550

seq1  TTACCCTGGCCCTGAGGACAAGCCCCGGTGCCAGAAGGCACTGCTGTCCC  599
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTACCCTGGCCCTGAGGACAAGCCCCGGTGCCAGAAGGCACTGCTGTCCC  600

seq1  CTCCACACAGCCCACATTCAAAAGGCAGTTAGTTCTCTTTG-TTGTCCCC  648
      ||||||||||||||||||||||||||||||||||||||||| ||||||||
seq2  CTCCACACAGCCCACATTCAAAAGGCAGTTAGTTCTCTTTGTTTGTCCCC  650

seq1  AGGGAGTCAAGCCTTAATGGG-TTTACAATGTGGCAGGCTCTTTTGGAGA  697
      ||||||||||||||||||||| ||||||||||||||||||||||||||||
seq2  AGGGAGTCAAGCCTTAATGGGTTTTACAATGTGGCAGGCTCTTTTGGAGA  700

seq1  GTGTCTGCTGCCAGAATCAGGGCAGAGAGAACCCCAGTGAGTGCCTCAGA  747
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTCTGCTGCCAGAATCAGGGCAGAGAGAACCCCAGTGAGTGCCTCAGA  750

seq1  TGTTGAGGTGACCCTGCCTGCACTCTAAGGGAAGCAGCACTCACCCCAGG  797
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTGAGGTGACCCTGCCTGCACTCTAAGGGAAGCAGCACTCACCCCAGG  800

seq1  CCTTGAGAACCCCTGCAAGAGCACCCTGAGAGGTCATGGGATCTGAAAGT  847
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTGAGAACCCCTGCAAGAGCACCCTGAGAGGTCATGGGATCTGAAAGT  850

seq1  G-AATCTGCCATTATTGCGAGCAGATGGCCGAAGACCTGGAGACTTCACT  896
      | ||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAATCTGCCATTATTGCGAGCAGATGGCCGAAGACCTGGAGACTTCACT  900

seq1  CTTCAGACAGGACTGT-GAGCATCAG-TGTCCC---CAGATCAATCCCAG  941
      |||||||||||||||| ||||||||| ||||||      ||| |||||||
seq2  CTTCAGACAGGACTGTGGAGCATCAGTTGTCCCTCTATAATCTATCCCAG  950

seq1  GTGAGAAGAGTCACTGC-TGTTGTGACATCACCCTGTGTTTCCAGTTAAT  990
      ||||||||||||||||| |||||||||||||||||  | || ||||||||
seq2  GTGAGAAGAGTCACTGCTTGTTGTGACATCACCCTTGGGTTTCAGTTAAT  1000

seq1  CTTGCTGTCAAAGAGTGA-CCCCTCTTTCTCAAACCTCTC-AATGTAG  1036
      |||||||||||  ||||| |||||||||||| |||| ||| |||||||
seq2  CTTGCTGTCAAGAAGTGACCCCCTCTTTCTCCAACC-CTCTAATGTAG  1047