BAC Information

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BAC

Clone NameB6Ng01-223I12
Chromosome4 (Build37)5 (Build37)
Map Location 132,155,896 - 132,156,467149,836,648 - 149,837,021
singlet/doubletsingletsinglet
Overlap genenone
Upstream geneLOC100039799, Ptpru, Mecr, Sfrs4, EG664865, EG623230, Epb4.1, LOC666480, LOC100039835, Oprd1, LOC664894, Ythdf2, LOC664903, Gmeb1, Rnu11, Taf12, 9530096D07Rik, LOC100039864, Trspap1, Rcc1, Snhg3, Phactr4, Med18, Sesn2, Atpif1, Dnajc8, Ptafr
Downstream geneEya3, Xkr8, Smpdl3b, Rpa2, BC013712, LOC100039917, Ppp1r8, Stx12, OTTMUSG00000010099, BC008163, Fgr, Ahdc1, LOC100041932, Wasf2, Gpr3, Cd164l2, Fcnc-ps, Map3k6, Sytl1, D4Ertd196e, LOC100041990, LOC100042018, Wdtc1, Slc9a1, 4732473B16Rik, 2300002D11Rik, 1810019J16Rik, Nudc, Nr0b2, Gpatch3, Atpbd1b
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-223I12.bB6Ng01-223I12.g
ACCGA038250GA038251
length995250
definitionB6Ng01-223I12.b B6Ng01-223I12.g
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(132,155,896 - 132,156,467)(149,836,648 - 149,837,021)
sequence
gaattccttcaaactcggagaaagaaagactcaaagaccaagagtcatct
agaagccgagataataatcacagtcatgattggggacaggacacctttac
ctacctctctatctagggagacaccatactgtattgttatgccgaaatga
atgtgagccctcctggtatgaagaagggacaaaggataaggaaaggagag
agaacgctcagaagagactaccccgagaagaactattatctattttacca
tctgctagattggctacggcaagactaaagagcacagcaaacgagtgaga
ttggaatgtacaaccccaaatgcagcacttacaacatcgaacattttgag
aggaagataagtgagaaactggagtctccagagggaatttcttccccacc
catattttacccaaaaacaaagcactgattgtctatatgtaacagaagag
gaaaaacactcctattgctggaaacagagagctgctgacaggattaatca
gttccaaccaagcctttggaaagaaaccctaatcttcagtagtccgccct
tgtcatcatcccacggttaattgcccattgtccagaccccacttccccac
agtcttttcctgtcttcacagttcatgactcctgttaaaatgacataagc
caggactggagagatggctcagaggttgggagcattggctgctcttccag
aggtcctgagttcagttcccagcaaccacatggtgactcacaaccatctg
taatgggatcttctggtgtgtctgaagatagcgagagtgtactcatatac
ataagataaataaatacattctctaaaaatatatatataaaccagacaca
caaacacatgctgctaatccagcacttgggagtctcagggaaggaagatt
gcaagttcatgaccagtctgggctacacagcaagactggaccacaaggca
agacactaagatccaggggctgggagatggctcatgcctgtcatc
acttttgtagaccaggctagccttgaactcagaaatccgcctgcctctgc
ctaaatcacttttaaggaagagagagacagagagagagagagacagagag
agagagagagagagagagagagagagaggaaggaaggaaggaaggaagga
aggaaggaaggaagaaagcaggatagccaggtggtggtggcgcacacctt
taatcccatcacttgggaggccatgcaggcggatttctgagttctaggcc

quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr4_132155896_132156467
seq2: B6Ng01-223I12.b_46_617 (reverse)

seq1  AATTAACCGTGGGATGATGACAAGGGCGGACTACTGAAGATTAGGGTTTC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTAACCGTGGGATGATGACAAGGGCGGACTACTGAAGATTAGGGTTTC  50

seq1  TTTCCAAAGGCTTGGTTGGAACTGATTAATCCTGTCAGCAGCTCTCTGTT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCCAAAGGCTTGGTTGGAACTGATTAATCCTGTCAGCAGCTCTCTGTT  100

seq1  TCCAGCAATAGGAGTGTTTTTCCTCTTCTGTTACATATAGACAATCAGTG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCAGCAATAGGAGTGTTTTTCCTCTTCTGTTACATATAGACAATCAGTG  150

seq1  CTTTGTTTTTGGGTAAAATATGGGTGGGGAAGAAATTCCCTCTGGAGACT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTGTTTTTGGGTAAAATATGGGTGGGGAAGAAATTCCCTCTGGAGACT  200

seq1  CCAGTTTCTCACTTATCTTCCTCTCAAAATGTTCGATGTTGTAAGTGCTG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGTTTCTCACTTATCTTCCTCTCAAAATGTTCGATGTTGTAAGTGCTG  250

seq1  CATTTGGGGTTGTACATTCCAATCTCACTCGTTTGCTGTGCTCTTTAGTC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTTGGGGTTGTACATTCCAATCTCACTCGTTTGCTGTGCTCTTTAGTC  300

seq1  TTGCCGTAGCCAATCTAGCAGATGGTAAAATAGATAATAGTTCTTCTCGG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGCCGTAGCCAATCTAGCAGATGGTAAAATAGATAATAGTTCTTCTCGG  350

seq1  GGTAGTCTCTTCTGAGCGTTCTCTCTCCTTTCCTTATCCTTTGTCCCTTC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTAGTCTCTTCTGAGCGTTCTCTCTCCTTTCCTTATCCTTTGTCCCTTC  400

seq1  TTCATACCAGGAGGGCTCACATTCATTTCGGCATAACAATACAGTATGGT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCATACCAGGAGGGCTCACATTCATTTCGGCATAACAATACAGTATGGT  450

seq1  GTCTCCCTAGATAGAGAGGTAGGTAAAGGTGTCCTGTCCCCAATCATGAC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCTCCCTAGATAGAGAGGTAGGTAAAGGTGTCCTGTCCCCAATCATGAC  500

seq1  TGTGATTATTATCTCGGCTTCTAGATGACTCTTGGTCTTTGAGTCTTTCT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGATTATTATCTCGGCTTCTAGATGACTCTTGGTCTTTGAGTCTTTCT  550

seq1  TTCTCCGAGTTTGAAGGAATTC  572
      ||||||||||||||||||||||
seq2  TTCTCCGAGTTTGAAGGAATTC  572

seq1: chr5_149836648_149837021
seq2: B6Ng01-223I12.g_169_318 (reverse)

seq1  GGCCTCGAACTCAGAAATCCGACTGCCTCTGCCTCCAAA--ACTGGGATT  48
      ||||| ||||||||||||||| |||| |  |||||| ||    |||||||
seq2  GGCCTAGAACTCAGAAATCCGCCTGCAT-GGCCTCCCAAGTGATGGGATT  49

seq1  AAAGGCGTGTGCCACCACTGCCCGGCTGATTCCCTGGTTTTTAACTTGCA  98
      ||||| ||| ||||||||  || |||| ||  ||||              
seq2  AAAGGTGTGCGCCACCACCACCTGGCT-AT--CCTG--------------  82

seq1  AAACTATTTCAGGTCTTAGTGATTTGAGGCAGTGATTGTCTAGTTCTGTT  148
                                                        
seq2  --------------------------------------------------  82

seq1  AGTCCAACTGTGAATACATCAAGATAGTGAAAATGGCTCTTGAATGAGTC  198
                                                        
seq2  --------------------------------------------------  82

seq1  CCTAACCCATGGCCAGATACAGAGCTTCTATGGAGGTGGAGTACCAGGGA  248
                                                        
seq2  --------------------------------------------------  82

seq1  CTTTCCCTTCCTTCCTTCCTTCCTTCCTTCCTTCCTTCCTTCCTTCCTTC  298
                                        ||| ||||||||||||
seq2  ----------------------------------CTTTCTTCCTTCCTTC  98

seq1  CTTCCTTCCTTCCTTCCTTCCTTCCTCTCTCCTCCTCCTCCTCCTCCTTC  348
      |||||||||||||||||||||||||||||||                   
seq2  CTTCCTTCCTTCCTTCCTTCCTTCCTCTCTC-------------------  129

seq1  TTCTTTCTCTCTCTCTCTTTCTCTCT  374
           ||||||||||||| |||||||
seq2  -----TCTCTCTCTCTCTCTCTCTCT  150