BAC Information

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BAC

Clone NameB6Ng01-224P08
Chromosome5 (Build37)
Map Location 123,087,433 - 123,161,855
singlet/doubletdoublet
Overlap geneP2rx7, P2rx4
Upstream geneAcad10, Brap, Atxn2, Sh2b3, A230106M15Rik, Cutl2, LOC100042693, Myl2, Ccdc63, Ppp1cc, Hvcn1, Tect1, Pptc7, Rad9b, Vps29, 1500011H22Rik, Atpbd1c, Arpc3, Anapc7, Atp2a2, Ift81
Downstream geneCamkk2, Anapc5, Rnf34, Fbxl10, LOC100039895, Tmem142a, Morn3, LOC623672, BC022593, Rhof, 4932422M17Rik, Setd1b, Hpd, Psmd9, Wdr66, LOC100042824, Bcl7a, Mlxip, LOC673222, Il31, Lrrc43, B3gnt4, Diablo, Vps33a, Clip1, Zcchc8
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-224P08.bB6Ng01-224P08.g
ACCGA039275GA039276
length956562
definitionB6Ng01-224P08.b B6Ng01-224P08.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(123,160,907 - 123,161,855)(123,087,433 - 123,088,000)
sequence
gaattctattcaggtcatcttcttctgctccttccttctgaagtaagggc
attgctgctggcctgattaactacaaacctgaaggttcctgtgtgagtgc
tggggtcactgggtcacttaactgctctgcgtctcagcttgtcctgcctt
tacactgagaaggataacaggacttcacaggattgcagtgagataagtta
ataaggcaagggtaataccttacttaatcagtgcagagcaatctaaacac
tgccaagagctgatgtcacattgctacagaacaccagtctatgttgtttc
agatacaccctcaaaagacttcagaaataggtattgtttttaccttttct
attttttcttttctttctttctttcttttttttaaaaaagatttacttgt
ttattttatattgtatatgagtacactgtagttgtcttgtcttcagacac
actagaagaaggcttcagatgacattgcagatggttgtgagccaccatgt
ggttgctgggaattgaactcaggacctctggaagagcagtcagtgctctt
aactgcttagccatctctccacccctctttcttccttcctttctttcttt
ctttctttctttctttctttctttctttctttctttcttccttcctttct
ttctttctttcttttcgacagggtttccctttgtggctctggctgtcctg
gaacctactctgttagaccaagctagccttgaactcagagatccaccctg
cctctacctactctgtgctgggatgaaaggtatgtgccaccactgcctgg
ctcttggggttacttcctcctgggtttggtttgatataagccatccccga
tcctctgcccatctaaagatggtttcctcttccacccgagccctcttctg
caaggcgctaatgatggagaggtggagggcagaagactggggggtttcta
tgaccc
aagtaccacagtcccccgtcttcagccacctccacaccactcagctagcc
tgtcctttccagagtgtgtgacgtgaatgaatcctttctccccagatgct
gtaggctttgctcctacgcctagcccccactctcaccgcgcttaatcctt
gactctgtctggtcccatggtttatctgcccacacttgactaagtgcggc
ttatgacgaagctctgtaccggcccttaagtctgtgaccgctgacttatt
ggaccgctgacttattggagcagcattcttcctatggcttctgagggcaa
ggcgcctcccgcgccccccaccccctttcccacttgcgtcttctcatggt
ctggtgtcctcaggacactttagattccctctgctgggcctgctggctgc
ttcccctgaggcttccaaactcagcagcaagtcacataatgccaggggtc
tccctctacgcacacaccagcaagggttttagaatcagtagtttcctcgg
ggagtgacaacaggaagataatggggaagtcctggggggaggggggtcag
ggctgggggata
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr5_123160907_123161855
seq2: B6Ng01-224P08.b_52_1007 (reverse)

seq1  GGGTCAT--AAAACCCACAGTCTTTCTGCCCT-CACCTCTCCATCATTAG  47
      |||||||  ||| ||| ||||| ||||||||| |||||||||||||||||
seq2  GGGTCATAGAAACCCCCCAGTC-TTCTGCCCTCCACCTCTCCATCATTAG  49

seq1  CGCCCTGCAGAAGAGGGCTC-GGTGGGAGA-GAAACCATCTTTAGGATGG  95
      |||| ||||||||||||||| ||||| ||| ||||||||||||| |||||
seq2  CGCCTTGCAGAAGAGGGCTCGGGTGGAAGAGGAAACCATCTTTA-GATGG  98

seq1  GCAGAGGATCGGGGATGGCTTATATCAAA-CAAACCCAGGAGGAAGTAA-  143
      ||||||||||||||||||||||||||||| ||||||||||||||||||| 
seq2  GCAGAGGATCGGGGATGGCTTATATCAAACCAAACCCAGGAGGAAGTAAC  148

seq1  CCCAAGAGCCAGGCAGTGGTGGCACATACCTTTCATCCCAGCACAGAGTA  193
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCAAGAGCCAGGCAGTGGTGGCACATACCTTTCATCCCAGCACAGAGTA  198

seq1  GGTAGAGGCA-GGTGGATCTCTGAGTTCAAGGCTAGCTTGGTCT-ACAGA  241
      |||||||||| ||||||||||||||||||||||||||||||||| |||||
seq2  GGTAGAGGCAGGGTGGATCTCTGAGTTCAAGGCTAGCTTGGTCTAACAGA  248

seq1  GTAGGTTCCAGGACAGCCAGAGCCACAAAGGGAAACCCTGTCGAAAAGAA  291
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAGGTTCCAGGACAGCCAGAGCCACAAAGGGAAACCCTGTCGAAAAGAA  298

seq1  AGAAAGAAAGAAAGGAAGGAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAG  341
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAAGAAAGAAAGGAAGGAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAG  348

seq1  AAAGAAAGAAAGAAAGAAAGGAAGGAAGAAAGAGGGGTGGAGAGATGGCT  391
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGAAAGAAAGAAAGAAAGGAAGGAAGAAAGAGGGGTGGAGAGATGGCT  398

seq1  AAGCAGTTAAGAGCACTGACTGCTCTTCCAGAGGTCCTGAGTTCAATTCC  441
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGCAGTTAAGAGCACTGACTGCTCTTCCAGAGGTCCTGAGTTCAATTCC  448

seq1  CAGCAACCACATGGTGGCTCACAACCATCTGCAATGTCATCTGAAGCCTT  491
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGCAACCACATGGTGGCTCACAACCATCTGCAATGTCATCTGAAGCCTT  498

seq1  CTTCTAGTGTGTCTGAAGACAAGACAACTACAGTGTACTCATATACAATA  541
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCTAGTGTGTCTGAAGACAAGACAACTACAGTGTACTCATATACAATA  548

seq1  TAAAATAAACAAGTAAATCTTTTTTAAAAAAAAGAAAGAAAGAAAGAAAA  591
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAAATAAACAAGTAAATCTTTTTTAAAAAAAAGAAAGAAAGAAAGAAAA  598

seq1  GAAAAAATAGAAAAGGTAAAAACAATACCTATTTCTGAAGTCTTTTGAGG  641
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAAAAATAGAAAAGGTAAAAACAATACCTATTTCTGAAGTCTTTTGAGG  648

seq1  GTGTATCTGAAACAACATAGACTGGTGTTCTGTAGCAATGTGACATCAGC  691
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTATCTGAAACAACATAGACTGGTGTTCTGTAGCAATGTGACATCAGC  698

seq1  TCTTGGCAGTGTTTAGATTGCTCTGCACTGATTAAGTAAGGTATTACCCT  741
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTGGCAGTGTTTAGATTGCTCTGCACTGATTAAGTAAGGTATTACCCT  748

seq1  TGCCTTATTAACTTATCTCACTGCAATCCTGTGAAGTCCTGTTATCCTTC  791
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCCTTATTAACTTATCTCACTGCAATCCTGTGAAGTCCTGTTATCCTTC  798

seq1  TCAGTGTAAAGGCAGGACAAGCTGAGACGCAGAGCAGTTAAGTGACCCAG  841
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGTGTAAAGGCAGGACAAGCTGAGACGCAGAGCAGTTAAGTGACCCAG  848

seq1  TGACCCCAGCACTCACACAGGAACCTTCAGGTTTGTAGTTAATCAGGCCA  891
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGACCCCAGCACTCACACAGGAACCTTCAGGTTTGTAGTTAATCAGGCCA  898

seq1  GCAGCAATGCCCTTACTTCAGAAGGAAGGAGCAGAAGAAGATGACCTGAA  941
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAGCAATGCCCTTACTTCAGAAGGAAGGAGCAGAAGAAGATGACCTGAA  948

seq1  TAGAATTC  949
      ||||||||
seq2  TAGAATTC  956

seq1: chr5_123087433_123088000
seq2: B6Ng01-224P08.g_67_634

seq1  GAATTCAAGTACCACAGTCCCCCGTCTTCAGCCACCTCCACACCACTCAG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAAGTACCACAGTCCCCCGTCTTCAGCCACCTCCACACCACTCAG  50

seq1  CTAGCCTGTCCTTTCCAGAGTGTGTGACGTGAATGAATCCTTTCTCCCCA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAGCCTGTCCTTTCCAGAGTGTGTGACGTGAATGAATCCTTTCTCCCCA  100

seq1  GATGCTGTAGGCTTTGCTCCTACGCCTAGCCCCCACTCTCACCGCGCTTA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATGCTGTAGGCTTTGCTCCTACGCCTAGCCCCCACTCTCACCGCGCTTA  150

seq1  ATCCTTGACTCTGTCTGGTCCCATGGTTTATCTGCCCACACTTGACTAAG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCCTTGACTCTGTCTGGTCCCATGGTTTATCTGCCCACACTTGACTAAG  200

seq1  TGCGGCTTATGACGAAGCTCTGTACCGGCCCTTAAGTCTGTGACCGCTGA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCGGCTTATGACGAAGCTCTGTACCGGCCCTTAAGTCTGTGACCGCTGA  250

seq1  CTTATTGGACCGCTGACTTATTGGAGCAGCATTCTTCCTATGGCTTCTGA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTATTGGACCGCTGACTTATTGGAGCAGCATTCTTCCTATGGCTTCTGA  300

seq1  GGGCAAGGCGCCTCCCGCGCCCCCCACCCCCTTTCCCACTTGCGTCTTCT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGCAAGGCGCCTCCCGCGCCCCCCACCCCCTTTCCCACTTGCGTCTTCT  350

seq1  CATGGTCTGGTGTCCTCAGGACACTTTAGATTCCCTCTGCTGGGCCTGCT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGGTCTGGTGTCCTCAGGACACTTTAGATTCCCTCTGCTGGGCCTGCT  400

seq1  GGCTGCTTCCCCTGAGGCTTCCAAACTCAGCAGCAAGTCACATAATGCCA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCTGCTTCCCCTGAGGCTTCCAAACTCAGCAGCAAGTCACATAATGCCA  450

seq1  GGGGTCTCCCTCTACGCACACACCAGCAAGGGTTTTAGAATCAGTAGTTT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGGTCTCCCTCTACGCACACACCAGCAAGGGTTTTAGAATCAGTAGTTT  500

seq1  CCTCGGGGAGTGACAACAGGAAGATAATGGGGAAGTCCTGGGGGGAGGGG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTCGGGGAGTGACAACAGGAAGATAATGGGGAAGTCCTGGGGGGAGGGG  550

seq1  GGTCAGGGCTGGGGGATA  568
      ||||||||||||||||||
seq2  GGTCAGGGCTGGGGGATA  568