BAC Information

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BAC

Clone NameB6Ng01-225C05
Chromosome5 (Build37)
Map Location 86,249,783 - 86,250,959
singlet/doubletsinglet
Overlap genenone
Upstream genenone
Downstream geneCenpc1, LOC100039521, AI586015, Ube1l2, Gnrhr, Tmprss11c, Tmprss11d, Tmprss11a, 9930032O22Rik, Tmprss11f, Tmprss11b, Tmprss11e, A730098D12Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-225C05.bB6Ng01-225C05.g
ACCGA039407GA039408
length1,1811,188
definitionB6Ng01-225C05.b B6Ng01-225C05.g
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
gaattcttagatcctccagtaaccagtcttcctgcttgctgtcatgctcc
ctgccattatgataatggattgaacctctgaaactgtaagccaacccaag
ttaaaagttttctttgagttgttttggtcatggtatcccttcacaacaat
ggataccctaactacggcagtatattatccagtttcaaggctttagatga
catctgtcacttccaaatccattatacagtcagaagctagcctgttaaat
ttcaaattgcaactcactgtctccacaaacatggcaaacatagcaggccc
caactaaactctgaaacttaccctgcatacatgctatggttgtttagcct
ggggtgtttgcagggtttctaaccgtggaagtaggggtgtctctgactct
ttcacctgctcttgggacatttttagtcctactgggttgtctcacccagc
tgggataagagtgtttgtacctagtcatattgtatcttattatgtcatat
ttggttaatataccttggaatccttatctttcctgaaaggaaaagaaata
ggagtggatctagggaagagagggggaactgggaggagtggacagaaggg
acactttggtcaggatatattgtatgaaagaaaaataaaaatatatatca
gatccatgatagcctggactacatagcaagactaccacaagagaatgaca
taaatcaatatagaaccctcatctctgactatcaccttctcaagctttga
ttgccttgataacatcccaacatgcatcatggataagataccaagccctg
tttgggaagaaagcaagaatttttgtttgtcttttattctctgctatctt
tggtgcataaaataaagcaatttttaaaactatagacaggggctggtgag
atggctcagcagtaagagcacccgactgctcttccgaaggtccggagttc
aaataccagcaaccacatggtggctcacaccatccgttatgagatctgac
tccctcttctggagtgtctgaagacagctacagtggtacttactataata
aattaataaatcttctaaaaaaattaaactcttggacataggtagatatg
acatagagacctttgaaagtgtcataatgaaaattaatacctatcactca
agatatttttgatggctttggcatatagctg

gaattcaccatttttcctagtaaaatacatagtgaactccactaaatggg
attttctacttaatggtggttacaaaagctgtatatctaacatcaagtac
attagtgaatgctttctctccaagatcagagacaaggttcattgccctca
ccactttcttaccaaacagtagggtcctagccaaggcagtaaagtgggga
tggagagagcaagcattgtaaatggcaaacaaataaagctatcttgatat
ccaatctaaaacacacaaaaagagaccagtaaaatgattgtttaccgaag
atgaaagataaaataatatatatgaccatatactagcaatgaacaattga
aaactgaaataagagatattgtttataataacataatagaaatataagaa
acttatgaatgaatatattaaaaggtgtaaagtacatgtatatcaaagca
tacagattaagaaaacccaaataaatgaaatgctaggcatttttcatggg
ttggaataaaatattaaaatataaagtttactgaaatggattcacttaat
gaacaaatgtcagcaaatgttaatgaaaattgctaattttatttgaaaat
tccgatagaagatccaacctaattttaaagagagcaacaagattaaaagg
tgaatatcccagttttccactttttttttaatgtagctacagtggtcaag
gaagtacagtataagaagggagataaagtgatgtgacaatggaaactcag
aaaacaaacctgtatgcacagcacacaatgtgttggtgagctgcttttga
cagatgcatgtagagaactcagtagaggattcagaatagtcacataacta
ttcctggaacaactgaatatatacgtgtatgaaagctgaaattcaaacct
gaccttaagaagtatacagaagtgcacttaacacagatcacaaaactaaa
cttaagacatagttctagagaacttctaggaaaaacttgaagaataattc
ttgtgatctggggtagaaaaataattcctgacataacactaaaggtagat
gagctatgttggtctcatgactagacctcttttgaagggccacttataac
aaatgaaaagaaaaatgtacaaattggcgatatgttgccaataaattatc
tggttacggaacctttggatccaggtatttatttctta
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr5_86249783_86250959
seq2: B6Ng01-225C05.b_47_1227

seq1  GAATTCTTAGATCCTCCAGTAACCAGTCTTCCTGCTTGCTGTCATGCTCC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTTAGATCCTCCAGTAACCAGTCTTCCTGCTTGCTGTCATGCTCC  50

seq1  CTGCCATTATGATAATGGATTGAACCTCTGAAACTGTAAGCCAACCCAAG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGCCATTATGATAATGGATTGAACCTCTGAAACTGTAAGCCAACCCAAG  100

seq1  TTAAAAGTTTTCTTTGAGTTGTTTTGGTCATGGTATCCCTTCACAACAAT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAAAAGTTTTCTTTGAGTTGTTTTGGTCATGGTATCCCTTCACAACAAT  150

seq1  GGATACCCTAACTACGGCAGTATATTATCCAGTTTCAAGGCTTTAGATGA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGATACCCTAACTACGGCAGTATATTATCCAGTTTCAAGGCTTTAGATGA  200

seq1  CATCTGTCACTTCCAAATCCATTATACAGTCAGAAGCTAGCCTGTTAAAT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATCTGTCACTTCCAAATCCATTATACAGTCAGAAGCTAGCCTGTTAAAT  250

seq1  TTCAAATTGCAACTCACTGTCTCCACAAACATGGCAAACATAGCAGGCCC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCAAATTGCAACTCACTGTCTCCACAAACATGGCAAACATAGCAGGCCC  300

seq1  CAACTAAACTCTGAAACTTACCCTGCATACATGCTATGGTTGTTTAGCCT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAACTAAACTCTGAAACTTACCCTGCATACATGCTATGGTTGTTTAGCCT  350

seq1  GGGGTGTTTGCAGGGTTTCTAACCGTGGAAGTAGGGGTGTCTCTGACTCT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGGTGTTTGCAGGGTTTCTAACCGTGGAAGTAGGGGTGTCTCTGACTCT  400

seq1  TTCACCTGCTCTTGGGACATTTTTAGTCCTACTGGGTTGTCTCACCCAGC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCACCTGCTCTTGGGACATTTTTAGTCCTACTGGGTTGTCTCACCCAGC  450

seq1  TGGGATAAGAGTGTTTGTACCTAGTCATATTGTATCTTATTATGTCATAT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGGATAAGAGTGTTTGTACCTAGTCATATTGTATCTTATTATGTCATAT  500

seq1  TTGGTTAATATACCTTGGAATCCTTATCTTTCCTGAAAGGAAAAGAAATA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGGTTAATATACCTTGGAATCCTTATCTTTCCTGAAAGGAAAAGAAATA  550

seq1  GGAGTGGATCTAGGGAAGAGAGGGGGAACTGGGAGGAGTGGACAGAAGGG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAGTGGATCTAGGGAAGAGAGGGGGAACTGGGAGGAGTGGACAGAAGGG  600

seq1  ACACTTTGGTCAGGATATATTGTATGAAAGAAAAATAAAAATATATATCA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACTTTGGTCAGGATATATTGTATGAAAGAAAAATAAAAATATATATCA  650

seq1  GATCCATGATAGCCTGGACTACATAGCAAGACTACCACAAGAGAATGACA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATCCATGATAGCCTGGACTACATAGCAAGACTACCACAAGAGAATGACA  700

seq1  TAAATCAATATAGAACCCTCATCTCTGACTATCACCTTCTCAAGCTTTGA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAATCAATATAGAACCCTCATCTCTGACTATCACCTTCTCAAGCTTTGA  750

seq1  TTGCCTTGATAACATCCCAACATGCATCATGGATAAGATACCAAGCCCTG  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGCCTTGATAACATCCCAACATGCATCATGGATAAGATACCAAGCCCTG  800

seq1  TTTGGGAAGAAAGCAAGAATTTTTGTTTGTCTTTTATTCTCTGCTATCTT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGGGAAGAAAGCAAGAATTTTTGTTTGTCTTTTATTCTCTGCTATCTT  850

seq1  TGGTGCATAAAATAAAGCAA-TTTTAAAACTATAGACAGGGGCTGGTGAG  899
      |||||||||||||||||||| |||||||||||||||||||||||||||||
seq2  TGGTGCATAAAATAAAGCAATTTTTAAAACTATAGACAGGGGCTGGTGAG  900

seq1  ATGGCTCAGCAGGTAAGAGCACCCGACTGCTCTTCCGAAGGTCCGGAGTT  949
      ||||||||||| ||||||||||||||||||||||||||||||||||||||
seq2  ATGGCTCAGCA-GTAAGAGCACCCGACTGCTCTTCCGAAGGTCCGGAGTT  949

seq1  CAAATACCAGCAACCACATGGTGGCTCACAACCATCCGTTATGAGATCTG  999
      ||||||||||||||||||||||||||||| ||||||||||||||||||||
seq2  CAAATACCAGCAACCACATGGTGGCTCAC-ACCATCCGTTATGAGATCTG  998

seq1  ACTCCCTCTTCTGGAGTGTCTGAAGACAGCTACAGT-GTACTTACATATA  1048
      |||||||||||||||||||||||||||||||||||| |||||||| ||||
seq2  ACTCCCTCTTCTGGAGTGTCTGAAGACAGCTACAGTGGTACTTAC-TATA  1047

seq1  ATAAA-TAATAAATCTT-TAAAAAAATAAAACT-ATAGACATAGTAAAAT  1095
      ||||| ||||||||||| ||||||||| |||||  | |||||||  | ||
seq2  ATAAATTAATAAATCTTCTAAAAAAATTAAACTCTTGGACATAGGTAGAT  1097

seq1  A-GACAATAGAAGAACATTGAAGTTGTAATAATAAAATATAATA-CTATA  1143
      | ||| |||| ||| | |||||  ||| ||||| |||  ||||| |||| 
seq2  ATGAC-ATAG-AGACCTTTGAAAGTGTCATAATGAAAATTAATACCTATC  1145

seq1  CATCAAGATATTTTAG-TGGCTTT-GCATATAGCTG  1177
        |||||||||||| | ||||||| |||||||||||
seq2  ACTCAAGATATTTTTGATGGCTTTGGCATATAGCTG  1181


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