BAC Information

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BAC

Clone NameB6Ng01-225H21
Chromosome5 (Build37)
Map Location 10,781,485 - 10,782,423
singlet/doubletsinglet
Overlap geneLOC100041395
Upstream geneLOC100042768, LOC625446, LOC435832, LOC381612, EG625586, LOC242809
Downstream geneLOC623849, LOC100041408, LOC667880, EG667888, EG667901, EG667907, LOC667916, LOC100041472, EG545728, LOC100042819, LOC667942, LOC667948, EG667949, Speer1-ps1, EG667956, LOC667961, EG667967, LOC100042858, LOC667974, EG667986, EG623898, EG668001, LOC668008, EG668011, LOC668017, EG668021
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-225H21.bB6Ng01-225H21.g
ACCGA039673GA039674
length1,225940
definitionB6Ng01-225H21.b B6Ng01-225H21.g
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
gaattctactcagttattaaaaacaatgacttcaagaaattcttaagcaa
atggaagaaactagaaaataccatcctgagtgaagtaacccagtcacaaa
agaacacaaatggtatgcactcactgataagtcattaacctaaaattttg
gaatacttaagatacaattcacagacagaccaaatgaagtacaagaagca
ggaataccaaattgtggtgctttggtcctttttccaggtaggaacaaaat
acctaagcaaagagaaacagagacaaagtgtggagcaggtacttaaggag
aaggcattcagagactgtgccacctgttgatgcatccgatatacagttac
caaagacactattgtggataccaagaattgcttggtgacaggaatctgat
atacttgtcttttgagaggctctgccagagcctgacaaatacagaggtag
atgctcacagccaaccatttgactgtgcacagatttcccaatggaggagt
tagagaaaggactgaaggagctgaaggtgtttgcatccccataggaggaa
caacaatatgaaccaaccagactcctcagaattcccagcgactaaaccat
caaccaaagagtacacagggagtaccccatggctccagccccatatgtag
cagaggatggcctcgttagacaatgaagaataaaaatttttactgaactc
ttcttcaccccagagcctgacccctcccatctagagattgttcccggaac
actcctaaactcttcaccccagaatgcattcctgaactcctcaccctaga
gttcgaaccctcccaactaaagactgttccaagaacattcttgagataag
ggcctcctggaacaacctcaaaatgaaccggatacattgccaaatgatag
gacatgaccccttagttacgtagattcccttggcagaacccctttgtccc
ttggcagacccccctagtgatgtaaacttgtactctcctgcccagttccc
ccccttgagtttactatataagcctgtgaaaaatttggctggtcgtcgat
tcttcctctacaccactagtgcatgagtttcgaccccagaagctctgtct
atgttcatgtgctttctgcctgttgtctataatctgcatctacattggag
tacggactcaaggtctctgggatccgccggctgtaccggggccttgagtg
tgcctttgagagtgagagagttctc
gaattccagccagatgtattgaaggtgtgtactaagggcatgtttatatt
ccagccagatcacacagatctagaaggtctttggacgttatcacatcagc
cacattgctagaataaaattcctctacactaacatttcacagtacttctg
ccttttacttctttatctatgaattatacacagtgatacattaccatgga
tcatacatttttaagactcgataaacatgctaaataaacataaactttaa
tcaccatttattcaatgttttgttgtaagtcatattctaatctataacaa
ggagtctactgtattagtttataaatatatgcaagcactaagaaggaaga
agattctcagctttgttatgtgatcatctttccctattaagtttacaatt
gaaaaaataatggaaaaaatcaagctttattgtgcatttgctatgacaaa
gattagcattttctaaatttctaccctaacaatagttgaatatgtagcat
cattccatcccagtttaattttgattacagattgaataagaactatagtt
acatacttcaaaatgatactgcttgaagttgtaatttctagaagctgata
tttaaagttattaagagttataacttaatcaggaaaattttaggattgtg
gttaactttatgtaagtttctgcttgaatgattgctattcatgttaacat
attatcctgcatttctaataatctgtgtataatcaattgctaaaatttgg
cttactaaagtacgaatttgtcttacaatatttttcattaaaaagctctt
gactctagctgcatatgtatcaaaagatggcctagtcggccatcattgga
aagagaggcccattgaacaggcaaactttatatgccccagtacaggggaa
tgccagggccaaaaaatgggaatgggtgggtaaggggagt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr5_10781485_10782423
seq2: B6Ng01-225H21.g_70_1009 (reverse)

seq1  ACTCCCC-TACCCACCCATTCCCATTTTTTGGCCCTGGCATTCCCCTGTA  49
      ||||||| ||||||||||||||||||||||||||||||||||||||||||
seq2  ACTCCCCTTACCCACCCATTCCCATTTTTTGGCCCTGGCATTCCCCTGTA  50

seq1  CTGGGGCATATAAAGTTTGCCTGTTCAATGGGCCTCTCTTTCCAATGATG  99
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGGGCATATAAAGTTTGCCTGTTCAATGGGCCTCTCTTTCCAATGATG  100

seq1  GCCGACTAGGCCATCTTTTGATACATATGCAGCTAGAGTCAAGAGCTTTT  149
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCGACTAGGCCATCTTTTGATACATATGCAGCTAGAGTCAAGAGCTTTT  150

seq1  TAATGAAAAATATTGTAAGACAAATTCGTACTTTAGTAAGCCAAATTTTA  199
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATGAAAAATATTGTAAGACAAATTCGTACTTTAGTAAGCCAAATTTTA  200

seq1  GCAATTGATTATACACAGATTATTAGAAATGCAGGATAATATGTTAACAT  249
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAATTGATTATACACAGATTATTAGAAATGCAGGATAATATGTTAACAT  250

seq1  GAATAGCAATCATTCAAGCAGAAACTTACATAAAGTTAACCACAATCCTA  299
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATAGCAATCATTCAAGCAGAAACTTACATAAAGTTAACCACAATCCTA  300

seq1  AAATTTTCCTGATTAAGTTATAACTCTTAATAACTTTAAATATCAGCTTC  349
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATTTTCCTGATTAAGTTATAACTCTTAATAACTTTAAATATCAGCTTC  350

seq1  TAGAAATTACAACTTCAAGCAGTATCATTTTGAAGTATGTAACTATAGTT  399
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGAAATTACAACTTCAAGCAGTATCATTTTGAAGTATGTAACTATAGTT  400

seq1  CTTATTCAATCTGTAATCAAAATTAAACTGGGATGGAATGATGCTACATA  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTATTCAATCTGTAATCAAAATTAAACTGGGATGGAATGATGCTACATA  450

seq1  TTCAACTATTGTTAGGGTAGAAATTTAGAAAATGCTAATCTTTGTCATAG  499
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCAACTATTGTTAGGGTAGAAATTTAGAAAATGCTAATCTTTGTCATAG  500

seq1  CAAATGCACAATAAAGCTTGATTTTTTCCATTATTTTTTCAATTGTAAAC  549
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAATGCACAATAAAGCTTGATTTTTTCCATTATTTTTTCAATTGTAAAC  550

seq1  TTAATAGGGAAAGATGATCACATAACAAAGCTGAGAATCTTCTTCCTTCT  599
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAATAGGGAAAGATGATCACATAACAAAGCTGAGAATCTTCTTCCTTCT  600

seq1  TAGTGCTTGCATATATTTATAAACTAATACAGTAGACTCCTTGTTATAGA  649
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGTGCTTGCATATATTTATAAACTAATACAGTAGACTCCTTGTTATAGA  650

seq1  TTAGAATATGACTTACAACAAAACATTGAATAAATGGTGATTAAAGTTTA  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAGAATATGACTTACAACAAAACATTGAATAAATGGTGATTAAAGTTTA  700

seq1  TGTTTATTTAGCATGTTTATCGAGTCTTAAAAATGTATGATCCATGGTAA  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTTATTTAGCATGTTTATCGAGTCTTAAAAATGTATGATCCATGGTAA  750

seq1  TGTATCACTGTGTATAATTCATAGATAAAGAAGTAAAAGGCAGAAGTACT  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTATCACTGTGTATAATTCATAGATAAAGAAGTAAAAGGCAGAAGTACT  800

seq1  GTGAAATGTTAGTGTAGAGGAATTTTATTCTAGCAATGTGGCTGATGTGA  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGAAATGTTAGTGTAGAGGAATTTTATTCTAGCAATGTGGCTGATGTGA  850

seq1  TAACGTCCAAAGACCTTCTAGATCTGTGTGATCTGGCTGGAATATAAACA  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAACGTCCAAAGACCTTCTAGATCTGTGTGATCTGGCTGGAATATAAACA  900

seq1  TGCCCTTAGTACACACCTTCAATACATCTGGCTGGAATTC  939
      ||||||||||||||||||||||||||||||||||||||||
seq2  TGCCCTTAGTACACACCTTCAATACATCTGGCTGGAATTC  940