BAC Information

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BAC

Clone NameB6Ng01-226K18
Chromosome5 (Build37)
Map Location 18,673,795 - 18,784,166
singlet/doubletdoublet
Overlap gene4921504A21Rik, Magi2
Upstream geneGnai1, LOC100041818, LOC668167
Downstream genenone
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-226K18.bB6Ng01-226K18.g
ACCGA040546GA040547
length1,0101,042
definitionB6Ng01-226K18.b B6Ng01-226K18.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(18,673,795 - 18,674,800)(18,783,120 - 18,784,166)
sequence
gaattcagagggaagagagagagacagagacagagacagagagacagaga
gagaatgagaatcaaccatatcccacattcccacatttatgtttctgcaa
acatttgttcattgtttcatccccttgtgctaagcattaaacattaatta
tgttattaatacactttaactgtgattcaataaatataagaaagaaataa
gaagagatgcttaaaatgtcatttccagtacagtgagaaacaggtgagca
gacaacaataagaactcattggaatatacaccacaacaccaactgtgggt
ctagagatgctttcttcctttattgtttttcatgggtttttaatattttt
atatctttattctttgacaattcatacatatctaatatgtagcttaatca
ttttcacaccagtattactctcttatcccatcatttctgctgaactcttc
atacccacaagttcctttgtacttttctatttttccaaacaaatattttc
aatggtactacagattcaatgcaatccccatcaaaattccaactcaattc
ttcaacgaattagaaggagcaatttgcaaattcatctggaataacaaaaa
acctaggatagcaaaaactcttctcaaggataaaagaacctctggtggaa
tcaccatgcctgacctaaagctttactacagagcaattgtgataaaaact
gcatggtactggtatagagacagacaagtagaccaatggaatagaattga
agacccagaaatgaacccacacacctatggtcacttgatcttcgacaagg
gagctaaaaccatccagtggaagaaagacagcattttcaacaattggtgc
tggcacaactggttgttatcatgtagaagaatgcgaatcgatccatcctt
gtactaaggtcaaatctaagtggatcaaggaacttcacttaaaaccagag
acactgaaacttatagagggaagaaaatgggggaaaaggcttgagatatg
gcacaggggg

gaattcatttctccttattgagaaaacatcagtctatatttgtataactt
tgtgaacatctgcgaaggaaacaaaaatcaaaattatccagcctttccca
taaattattgttcaaataacatttaaaactaaattagccacctgatggga
acacaccttagaagctaggattaatgttgggtgtcatgatatagaaagag
aaaacaagcaaccaaacattaacataaagtttctaatatgaagatatgtt
cctataattttccaatatgtcactccctatggtacaatgggccaaataat
ttggtatggttttgcttctttgcttaaggaaatggattataaaacaaaca
aaaagtaaagtatgtgtcacttatatgctacaaaatattagttacaaaaa
atcataagattttttacccattttgaaaagtgcaataatagtatgaagca
aaatttttagaataatactaaaggaattctatttgtcagcctggacttga
tatctatacctatgccagtgacaattgacaactgactagtacacacaaac
cctgaggctcaactggagtctcagtgctacagtaaataatcaccctgaat
ggtcctacttctggatcagctagtgacctatacattactggaaactatat
tatttcttcatgtagaattaattcattccacatctcaacttctgatcatt
tgcatttgtggcttcagaggagtttttacatcccaaatggtctgactcac
aagtgagagtttctgatgaaaattacatccccctaggacctcatgaactt
gttcagtgtggcttgtgtattgacagaactgtgtaagcaacttcacattt
ctgctctcggttttcttctctttataagagtctgtcttaagcactgctat
acatttatattttatgaaagttttatatgggtttttaaggaaaaagtctt
ttgttaaactcaggatatttgaagaaattcttatcaaactataaacagag
tgggggggaaagctcagtgactaggtgcttaccacaggatga
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr5_18673795_18674800
seq2: B6Ng01-226K18.b_44_1050

seq1  GAATTCAGAGGGAAGAGAGAGAGACAGAGACAGAGACAGAGAGACAGAGA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAGAGGGAAGAGAGAGAGACAGAGACAGAGACAGAGAGACAGAGA  50

seq1  GAGAATGAGAATCAACCATATCCCACATTCCCACATTTATGTTTCTGCAA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGAATGAGAATCAACCATATCCCACATTCCCACATTTATGTTTCTGCAA  100

seq1  ACATTTGTTCATTGTTTCATCCCCTTGTGCTAAGCATTAAACATTAATTA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATTTGTTCATTGTTTCATCCCCTTGTGCTAAGCATTAAACATTAATTA  150

seq1  TGTTATTAATACACTTTAACTGTGATTCAATAAATATAAGAAAGAAATAA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTATTAATACACTTTAACTGTGATTCAATAAATATAAGAAAGAAATAA  200

seq1  GAAGAGATGCTTAAAATGTCATTTCCAGTACAGTGAGAAACAGGTGAGCA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGAGATGCTTAAAATGTCATTTCCAGTACAGTGAGAAACAGGTGAGCA  250

seq1  GACAACAATAAGAACTCATTGGAATATACACCACAACACCAACTGTGGGT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACAACAATAAGAACTCATTGGAATATACACCACAACACCAACTGTGGGT  300

seq1  CTAGAGATGCTTTCTTCCTTTATTGTTTTTCATGGGTTTTTAATATTTTT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAGAGATGCTTTCTTCCTTTATTGTTTTTCATGGGTTTTTAATATTTTT  350

seq1  ATATCTTTATTCTTTGACAATTCATACATATCTAATATGTAGCTTAATCA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATCTTTATTCTTTGACAATTCATACATATCTAATATGTAGCTTAATCA  400

seq1  TTTTCACACCAGTATTACTCTCTTATCCCATCATTTCTGCTGAACTCTTC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTCACACCAGTATTACTCTCTTATCCCATCATTTCTGCTGAACTCTTC  450

seq1  ATACCCACAAGTTCCTTTGTACTTTTCTATTTTTCCAAACAAATATTTTC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATACCCACAAGTTCCTTTGTACTTTTCTATTTTTCCAAACAAATATTTTC  500

seq1  AATGGTACTACAGATTCAATGCAATCCCCATCAAAATTCCAACTCAATTC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGGTACTACAGATTCAATGCAATCCCCATCAAAATTCCAACTCAATTC  550

seq1  TTCAACGAATTAGAAGGAGCAATTTGCAAATTCATCTGGAATAACAAAAA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCAACGAATTAGAAGGAGCAATTTGCAAATTCATCTGGAATAACAAAAA  600

seq1  ACCTAGGATAGCAAAAACTCTTCTCAAGGATAAAAGAACCTCTGGTGGAA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCTAGGATAGCAAAAACTCTTCTCAAGGATAAAAGAACCTCTGGTGGAA  650

seq1  TCACCATGCCTGACCTAAAGCTTTACTACAGAGCAATTGTGATAAAAACT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCACCATGCCTGACCTAAAGCTTTACTACAGAGCAATTGTGATAAAAACT  700

seq1  GCATGGTACTGGTATAGAGACAGACAAGTAGACCAATGGAATAGAATTGA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCATGGTACTGGTATAGAGACAGACAAGTAGACCAATGGAATAGAATTGA  750

seq1  AGACCCAGAAATGAACCCACACACCTATGGTCACTTGATCTTCGACAAGG  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGACCCAGAAATGAACCCACACACCTATGGTCACTTGATCTTCGACAAGG  800

seq1  GAGCTAAAACCATCCAGTGGAAGAAAGACAGCATTTTCAACAATTGGTGC  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGCTAAAACCATCCAGTGGAAGAAAGACAGCATTTTCAACAATTGGTGC  850

seq1  TGGCACAACTGGTTGTTATCATGTAGAAGAATGCGAATCGATCCATCCTT  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGCACAACTGGTTGTTATCATGTAGAAGAATGCGAATCGATCCATCCTT  900

seq1  GTACTAAGGTCAAATCTAAGTGGATCAAGGAACTTCACTTAAAACCAGAG  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTACTAAGGTCAAATCTAAGTGGATCAAGGAACTTCACTTAAAACCAGAG  950

seq1  ACACTGAAACTTATAGAGG--AGAAAAT-GGGGAAAAGCCTTGAAGATAT  997
      |||||||||||||||||||  ||||||| ||||||||| |||| ||||||
seq2  ACACTGAAACTTATAGAGGGAAGAAAATGGGGGAAAAGGCTTG-AGATAT  999

seq1  GGGCACAGG  1006
       ||||||||
seq2  -GGCACAGG  1007


seq1: chr5_18783120_18784166
seq2: B6Ng01-226K18.g_69_1110 (reverse)

seq1  TCATCTTTGTGGTAAGCAACTTAGTTCACTGAGCCTTTCCCCCCACTCTG  50
      |||||  |||||||||| || ||| ||||||||| || ||||||||||||
seq2  TCATC-CTGTGGTAAGC-ACCTAG-TCACTGAGCTTTCCCCCCCACTCTG  47

seq1  TTTATAGTTTTGGATAGAATTTTCTTCAAATATCCTGAGTTTTAACAAAA  100
      ||||||||||  ||||  | ||||||||||||||||||| ||||||||||
seq2  TTTATAGTTT--GATAAGAATTTCTTCAAATATCCTGAG-TTTAACAAAA  94

seq1  GACTTTTTCCTTAAAAA-CCATATAAAACTTTCATAAAATATAAATGTAT  149
      ||||||||||||||||| ||||||||||||||||||||||||||||||||
seq2  GACTTTTTCCTTAAAAACCCATATAAAACTTTCATAAAATATAAATGTAT  144

seq1  AGCAGTGCTTAAGACAGACTCTTATAAAGAGAAGAAAACCGAGAGCAGAA  199
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCAGTGCTTAAGACAGACTCTTATAAAGAGAAGAAAACCGAGAGCAGAA  194

seq1  ATGTGAAGTTGCTTACACAGTTCTGTCAATACACAAGCCACACTGAACAA  249
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTGAAGTTGCTTACACAGTTCTGTCAATACACAAGCCACACTGAACAA  244

seq1  GTTCATGAGGTCCTAGGGGGATGTAATTTTCATCAGAAACTCTCACTTGT  299
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTCATGAGGTCCTAGGGGGATGTAATTTTCATCAGAAACTCTCACTTGT  294

seq1  GAGTCAGACCATTTGGGATGTAAAAACTCCTCTGAAGCCACAAATGCAAA  349
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGTCAGACCATTTGGGATGTAAAAACTCCTCTGAAGCCACAAATGCAAA  344

seq1  TGATCAGAAGTTGAGATGTGGAATGAATTAATTCTACATGAAGAAATAAT  399
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGATCAGAAGTTGAGATGTGGAATGAATTAATTCTACATGAAGAAATAAT  394

seq1  ATAGTTTCCAGTAATGTATAGGTCACTAGCTGATCCAGAAGTAGGACCAT  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAGTTTCCAGTAATGTATAGGTCACTAGCTGATCCAGAAGTAGGACCAT  444

seq1  TCAGGGTGATTATTTACTGTAGCACTGAGACTCCAGTTGAGCCTCAGGGT  499
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGGGTGATTATTTACTGTAGCACTGAGACTCCAGTTGAGCCTCAGGGT  494

seq1  TTGTGTGTACTAGTCAGTTGTCAATTGTCACTGGCATAGGTATAGATATC  549
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTGTGTACTAGTCAGTTGTCAATTGTCACTGGCATAGGTATAGATATC  544

seq1  AAGTCCAGGCTGACAAATAGAATTCCTTTAGTATTATTCTAAAAATTTTG  599
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTCCAGGCTGACAAATAGAATTCCTTTAGTATTATTCTAAAAATTTTG  594

seq1  CTTCATACTATTATTGCACTTTTCAAAATGGGTAAAAAATCTTATGATTT  649
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCATACTATTATTGCACTTTTCAAAATGGGTAAAAAATCTTATGATTT  644

seq1  TTTGTAACTAATATTTTGTAGCATATAAGTGACACATACTTTACTTTTTG  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGTAACTAATATTTTGTAGCATATAAGTGACACATACTTTACTTTTTG  694

seq1  TTTGTTTTATAATCCATTTCCTTAAGCAAAGAAGCAAAACCATACCAAAT  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGTTTTATAATCCATTTCCTTAAGCAAAGAAGCAAAACCATACCAAAT  744

seq1  TATTTGGCCCATTGTACCATAGGGAGTGACATATTGGAAAATTATAGGAA  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTTGGCCCATTGTACCATAGGGAGTGACATATTGGAAAATTATAGGAA  794

seq1  CATATCTTCATATTAGAAACTTTATGTTAATGTTTGGTTGCTTGTTTTCT  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATATCTTCATATTAGAAACTTTATGTTAATGTTTGGTTGCTTGTTTTCT  844

seq1  CTTTCTATATCATGACACCCAACATTAATCCTAGCTTCTAAGGTGTGTTC  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTCTATATCATGACACCCAACATTAATCCTAGCTTCTAAGGTGTGTTC  894

seq1  CCATCAGGTGGCTAATTTAGTTTTAAATGTTATTTGAACAATAATTTATG  949
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCATCAGGTGGCTAATTTAGTTTTAAATGTTATTTGAACAATAATTTATG  944

seq1  GGAAAGGCTGGATAATTTTGATTTTTGTTTCCTTCGCAGATGTTCACAAA  999
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAAAGGCTGGATAATTTTGATTTTTGTTTCCTTCGCAGATGTTCACAAA  994

seq1  GTTATACAAATATAGACTGATGTTTTCTCAATAAGGAGAAATGAATTC  1047
      ||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTATACAAATATAGACTGATGTTTTCTCAATAAGGAGAAATGAATTC  1042


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