BAC Information

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BAC

Clone NameB6Ng01-226K23
Chromosome5 (Build37)
Map Location 14,658,586 - 14,659,723
singlet/doubletsinglet
Overlap genePclo
Upstream geneLOC208055, LOC626053, Speer3, EG626067, LOC668085, LOC384149, LOC384148, Sema3e, LOC100042957
Downstream geneENSMUSG00000033219, LOC624245, Speer8-ps1, Speer4c, Speer4d, 4930572O03Rik, Speer7-ps1, 4930519H02Rik, LOC100041781, Cacna2d1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-226K23.bB6Ng01-226K23.g
ACCGA040556GA040557
length1,145402
definitionB6Ng01-226K23.b B6Ng01-226K23.g
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
gaattcaagactagaaagagttatataagacactgtttcaaatataaatg
tatgcaaaatattttatttgtgggacttttattcttattctgcatctctt
aaaaatgaacaatatatgattaaggtccttttattactgcatattatatt
actacatatttttaaattagaatatatgattttcttcatacttctggtct
ttttatgattaccaaaagaagaatgactcaagtacaaagtacagtattta
ataatatgttctttctcgtttgttcgtatgtccaaaatgagttacataag
aagttaaggcaaaataggcaagtatacatgtaaaacaatacaaaataagc
atgctcttacaaacaactggaacatgggaaatagatactttactgagtta
gagtagaatgaccacatttgaggaaaggatcaaaaaaaaatcctagcaga
ctacggcaaactgggagaaccctgaatttctaaggtccttggtctaaggt
gatcagcagacctgtccatgtctcccacctctgcaatgccacacagccct
atacatctcaaaatagtcactctgctatttttctttagaagtataaaata
tatgcttccacatatgcaaaatatgctaacaatatttttataaatagcca
catgtgaactaaaatcacatatagcatttaataaataaaaatcatattat
atatattataatcagagatttaaaatatgctgaaaaactaactcaatact
ttttgttggtttggtgttcatcttttcatgacctaaaccagaatcccttt
ctgttttctttcttgtcatgatacgtatacagtttatacatatatatata
tacagtatatacatatacagtttatacatatgtatatactgtatatgtat
atacatatgtatatacagtatatacacatacagtttatacatatatacag
tatatacatatagtttatacatatatatacagtatatacatatacagttt
atacatatatatacagtatatacatatacagtttttctaaactccaaaaa
acaattctgagtggtattaaaaagaggttatatgcatacaatttttatgc
ctgataaattacatttgaaacaatttggtggactgaactcactga
tttgtttagttctgtgccccattttttaatggggttatttggttttctgg
agtccatcttcttgagttctttatatatattggatagctgtctcttgtga
ggctatgccagtgcctggcaaacacagaagtggatgctcacagtcagcta
ttgtatgaaatacagagcccccaatggaggagctagagaaagtacccaag
gagctgaaggggtctgcaaccctataggtggaacaacaatatgaactaac
cagtacccccagagcttgtgtctccagctgcatatgtagcagaagatggc
ctagtcggccatcattgggaagagaggccccttggtcttgcaaattttat
atgccccggtacaggggaaacaccagggccaagaagtgggactgggtggg
ta
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr5_14658586_14659723
seq2: B6Ng01-226K23.b_46_1190 (reverse)

seq1  TCAGTGAGTTCAGT-CAC--AATTGTTTC-AATGTAATTTTAATTCAGGC  46
      |||||||||||||| |||  ||||||||| ||||||||||    ||||||
seq2  TCAGTGAGTTCAGTCCACCAAATTGTTTCAAATGTAATTT---ATCAGGC  47

seq1  ATAAAA--TGTATGCATATAA-CTCTTTTAATTACCACTCAG-ATTG-TT  91
      ||||||  ||||||||||||| ||||||| | |||||||||| |||| ||
seq2  ATAAAAATTGTATGCATATAACCTCTTTTTAATACCACTCAGAATTGTTT  97

seq1  TTTGGAGTTTAG-AAAACTGTATATGTATATACTGTATATATATGTATAA  140
      |||||||||||| |||||||||||||||||||||||||||||||||||||
seq2  TTTGGAGTTTAGAAAAACTGTATATGTATATACTGTATATATATGTATAA  147

seq1  ACTGTATATGTATATACTGTATATATATGTATAAACTATATGTATATACT  190
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTGTATATGTATATACTGTATATATATGTATAAACTATATGTATATACT  197

seq1  GTATATATGTATAAACTGTATGTGTATATACTGTATATACATATGTATAT  240
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTATATATGTATAAACTGTATGTGTATATACTGTATATACATATGTATAT  247

seq1  ACATATACAGTATATACATATGTATAAACTGTATATGTATATACTGTATA  290
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATATACAGTATATACATATGTATAAACTGTATATGTATATACTGTATA  297

seq1  TATATATATGTATAAACTGTATACGTATCATGACAAGAAAGAAAACAGAA  340
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATATATATGTATAAACTGTATACGTATCATGACAAGAAAGAAAACAGAA  347

seq1  AGGGATTCTGGTTTAGGTCATGAAAAGATGAACACCAAACCAACAAAAAG  390
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGGATTCTGGTTTAGGTCATGAAAAGATGAACACCAAACCAACAAAAAG  397

seq1  TATTGAGTTAGTTTTTCAGCATATTTTAAATCTCTGATTATAATATATAT  440
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTGAGTTAGTTTTTCAGCATATTTTAAATCTCTGATTATAATATATAT  447

seq1  AATATGATTTTTATTTATTAAATGCTATATGTGATTTTAGTTCACATGTG  490
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATATGATTTTTATTTATTAAATGCTATATGTGATTTTAGTTCACATGTG  497

seq1  GCTATTTATAAAAATATTGTTAGCATATTTTGCATATGTGGAAGCATATA  540
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTATTTATAAAAATATTGTTAGCATATTTTGCATATGTGGAAGCATATA  547

seq1  TTTTATACTTCTAAAGAAAAATAGCAGAGTGACTATTTTGAGATGTATAG  590
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTATACTTCTAAAGAAAAATAGCAGAGTGACTATTTTGAGATGTATAG  597

seq1  GGCTGTGTGGCATTGCAGAGGTGGGAGACATGGACAGGTCTGCTGATCAC  640
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCTGTGTGGCATTGCAGAGGTGGGAGACATGGACAGGTCTGCTGATCAC  647

seq1  CTTAGACCAAGGACCTTAGAAATTCAGGGTTCTCCCAGTTTGCCGTAGTC  690
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTAGACCAAGGACCTTAGAAATTCAGGGTTCTCCCAGTTTGCCGTAGTC  697

seq1  TGCTAGGATTTTTTTTTGATCCTTTCCTCAAATGTGGTCATTCTACTCTA  740
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTAGGATTTTTTTTTGATCCTTTCCTCAAATGTGGTCATTCTACTCTA  747

seq1  ACTCAGTAAAGTATCTATTTCCCATGTTCCAGTTGTTTGTAAGAGCATGC  790
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTCAGTAAAGTATCTATTTCCCATGTTCCAGTTGTTTGTAAGAGCATGC  797

seq1  TTATTTTGTATTGTTTTACATGTATACTTGCCTATTTTGCCTTAACTTCT  840
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATTTTGTATTGTTTTACATGTATACTTGCCTATTTTGCCTTAACTTCT  847

seq1  TATGTAACTCATTTTGGACATACGAACAAACGAGAAAGAACATATTATTA  890
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATGTAACTCATTTTGGACATACGAACAAACGAGAAAGAACATATTATTA  897

seq1  AATACTGTACTTTGTACTTGAGTCATTCTTCTTTTGGTAATCATAAAAAG  940
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATACTGTACTTTGTACTTGAGTCATTCTTCTTTTGGTAATCATAAAAAG  947

seq1  ACCAGAAGTATGAAGAAAATCATATATTCTAATTTAAAAATATGTAGTAA  990
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCAGAAGTATGAAGAAAATCATATATTCTAATTTAAAAATATGTAGTAA  997

seq1  TATAATATGCAGTAATAAAAGGACCTTAATCATATATTGTTCATTTTTAA  1040
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATAATATGCAGTAATAAAAGGACCTTAATCATATATTGTTCATTTTTAA  1047

seq1  GAGATGCAGAATAAGAATAAAAGTCCCACAAATAAAATATTTTGCATACA  1090
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGATGCAGAATAAGAATAAAAGTCCCACAAATAAAATATTTTGCATACA  1097

seq1  TTTATATTTGAAACAGTGTCTTATATAACTCTTTCTAGTCTTGAATTC  1138
      ||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTATATTTGAAACAGTGTCTTATATAACTCTTTCTAGTCTTGAATTC  1145