BAC Information

Click to search

BAC

Clone NameB6Ng01-226P21
Chromosome5 (Build37)
Map Location 73,143,254 - 73,270,682
singlet/doubletdoublet
Overlap geneTec
Upstream geneGabrb1, LOC666545, Commd8, Atp10d, Corin, Nfxl1, Zar1, EG545758, Cnga1, LOC384275, Npal1, Txk
Downstream geneSlain2, Slc10a4, LOC667127, Fryl, Ociad1, Ociad2, LOC667154, LOC100042205, C130090K23Rik, LOC627733, Dcun1d4, BC031901, Sgcb, Spata18
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-226P21.bB6Ng01-226P21.g
ACCGA040780GA040781
length866402
definitionB6Ng01-226P21.b B6Ng01-226P21.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(73,143,254 - 73,144,111)(73,270,275 - 73,270,682)
sequence
gaattctggcctaatctagaatgactaagttctactgatgtttgattccc
agggcatctagaattaaaatcagagatcgtcttttttttttcctttccta
aacccctatacataattagcctctcttgagtcttaactgtggagtgcttc
caaaaatcgtcttgaagtctttcaaagcaactctcagattagttgatgtg
cttgccagctttgcccactgtttacttgtgacggctataggaggaggcag
aaagggagcgctcacactgtagacttgttcatccaaccgaggtgccaatg
ggaacctgtcaaagctgaggctaaaccagaaaagtctgatctcttcaccc
tcaactctgagttcattatcattcaaaaaacaaacatatcccatcacact
gaccgaatttccacacatgctaagtacacaactttttttttttttgctat
tgtcatctgtattctcaattctcaagtatataattttatcaagaggcagt
ggacatttaactaagccacaaaatcctgtcactacatctgaagaaatcat
ctttaggatttcacaaattccttgttttagcaaaacccactcctaggggt
caccagtaagcaacacacccataaacacgctgtgacattaaatggtaaag
cccatcttactcacaagaggacaggatcatggcgaccctgcttgctggcc
ttacacagaagccttggttctttcagctctgttccactcacgggaaacac
atctttcaactgaaagcatacttgttaggcctgtcacgtttctctcaggc
aaaatttatcccccacctaattctcctgctctgaaaaacctcaagagtgt
gtggattgacaaccca
ctaacattactctttcccaataaagattaagtgtagtagaggcttgggaa
agatggctcagtggtgaagagctctggctgcacttgcagaggacttggga
tcaattcccagcatccacatgacagctcataaccatctgtaattccagtc
ccaggggatctgacactctgtgacttccatgagcactgcatacacaatgt
tgcacacacagacaatgcaagcaaacacatacaataaaacacatacaata
aaaataagtagattttaaataagtacatagatataccagaatgagaaata
tagcttttttccttccttccttccttccttccttccatacatacttcctt
ccttccttccttcctttctttctctctctctctctctctctctctctctc
tc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr5_73143254_73144111
seq2: B6Ng01-226P21.b_46_911

seq1  GAATTCTGGCCTAATCTAGAATGACTAAGTTCTACTGATGTTTGATTCCC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTGGCCTAATCTAGAATGACTAAGTTCTACTGATGTTTGATTCCC  50

seq1  AGGGCATCTAGAATTAAAATCAGAGATCGTCTTTTTTTTTTCCTTTCCTA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGGCATCTAGAATTAAAATCAGAGATCGTCTTTTTTTTTTCCTTTCCTA  100

seq1  AACCCCTATACATAATTAGCCTCTCTTGAGTCTTAACTGTGGAGTGCTTC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACCCCTATACATAATTAGCCTCTCTTGAGTCTTAACTGTGGAGTGCTTC  150

seq1  CAAAAATCGTCTTGAAGTCTTTCAAAGCAACTCTCAGATTAGTTGATGTG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAAAATCGTCTTGAAGTCTTTCAAAGCAACTCTCAGATTAGTTGATGTG  200

seq1  CTTGCCAGCTTTGCCCACTGTTTACTTGTGACGGCTATAGGAGGAGGCAG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTGCCAGCTTTGCCCACTGTTTACTTGTGACGGCTATAGGAGGAGGCAG  250

seq1  AAAGGGAGCGCTCACACTGTAGACTTGTTCATCCAACCGAGGTGCCAATG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGGGAGCGCTCACACTGTAGACTTGTTCATCCAACCGAGGTGCCAATG  300

seq1  GGAACCTGTCAAAGCTGAGGCTAAACCAGAAAAGTCTGATCTCTTCACCC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAACCTGTCAAAGCTGAGGCTAAACCAGAAAAGTCTGATCTCTTCACCC  350

seq1  TCAACTCTGAGTTCATTATCATTCAAAAAACAAACATATCCCATCACACT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAACTCTGAGTTCATTATCATTCAAAAAACAAACATATCCCATCACACT  400

seq1  GACCGAATTTCCACACATGCTAAGTACACAACTTTTTTTTTTTTTGCTAT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACCGAATTTCCACACATGCTAAGTACACAACTTTTTTTTTTTTTGCTAT  450

seq1  TGTCATCTGTATTCTCAATTCTCAAGTATATAATTTTATCAAGAGGCAGT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTCATCTGTATTCTCAATTCTCAAGTATATAATTTTATCAAGAGGCAGT  500

seq1  GGACATTTAACTAAGCCACAAAATCCTGTCACTACATCTGAAGAAATCAT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGACATTTAACTAAGCCACAAAATCCTGTCACTACATCTGAAGAAATCAT  550

seq1  CTTTAGGATTTCACAAATTCCTTGTTTTAGCAAAACCCACTCCTAGGGGT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTAGGATTTCACAAATTCCTTGTTTTAGCAAAACCCACTCCTAGGGGT  600

seq1  CACCAGTAGGCAACACACCCATAAACACGCTGTGACATTAAATGGTAAAG  650
      |||||||| |||||||||||||||||||||||||||||||||||||||||
seq2  CACCAGTAAGCAACACACCCATAAACACGCTGTGACATTAAATGGTAAAG  650

seq1  CCCATCTTACTCACAAGAGGACAGGATCATGGCGACCCTGCTTGCTGGCC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCATCTTACTCACAAGAGGACAGGATCATGGCGACCCTGCTTGCTGGCC  700

seq1  ATACACAGAAGCCTTGGTTC-TTCAGCTCTGTTCCACTCAC-GGTAACAC  748
       ||||||||||||||||||| |||||||||||||||||||| || |||||
seq2  TTACACAGAAGCCTTGGTTCTTTCAGCTCTGTTCCACTCACGGGAAACAC  750

seq1  ATCTTTCAACTGAAAGCATAGTTGTT-GGCCTGTGACGTTTCTCACAGGC  797
      |||||||||||||||||||| ||||| ||||||| ||||||||| |||||
seq2  ATCTTTCAACTGAAAGCATACTTGTTAGGCCTGTCACGTTTCTCTCAGGC  800

seq1  AAAGTTTA--CCCCACCTAATT-TCCTGTTCTG-AAAACCTCAAGAGTGT  843
      ||| ||||  |||||||||||| ||||| |||| ||||||||||||||||
seq2  AAAATTTATCCCCCACCTAATTCTCCTGCTCTGAAAAACCTCAAGAGTGT  850

seq1  GT-GAATGACAACCCA  858
      || || ||||||||||
seq2  GTGGATTGACAACCCA  866

seq1: chr5_73270275_73270682
seq2: B6Ng01-226P21.g_64_471 (reverse)

seq1  GAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAAAGAAAGGAAGGAAGGAA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAAAGAAAGGAAGGAAGGAA  50

seq1  GGAAGGAAGGAAGGAAGGAAGGAAGGAAGGAAGGAAGGAAGGAAAAAAGC  100
      ||||||||| | | | ||||||||||||||||||||||||||||||||||
seq2  GGAAGGAAGTATGTATGGAAGGAAGGAAGGAAGGAAGGAAGGAAAAAAGC  100

seq1  TATATTTCTCATTCTGGTATATCTATGTACTTATTTAAAATCTACTTATT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATATTTCTCATTCTGGTATATCTATGTACTTATTTAAAATCTACTTATT  150

seq1  TTTATTGTATGTGTTTTATTGTATGTGTTTGCTTGCATTGTCTGTGTGTG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTATTGTATGTGTTTTATTGTATGTGTTTGCTTGCATTGTCTGTGTGTG  200

seq1  CAACATTGTGTATGCAGTGCTCATGGAAGTCACAGAGTGTCAGATCCCCT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAACATTGTGTATGCAGTGCTCATGGAAGTCACAGAGTGTCAGATCCCCT  250

seq1  GGGACTGGAATTACAGATGGTTATGAGCTGTCATGTGGATGCTGGGAATT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGACTGGAATTACAGATGGTTATGAGCTGTCATGTGGATGCTGGGAATT  300

seq1  GATCCCAAGTCCTCTGCAAGTGCAGCCAGAGCTCTTCACCACTGAGCCAT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATCCCAAGTCCTCTGCAAGTGCAGCCAGAGCTCTTCACCACTGAGCCAT  350

seq1  CTTTCCCAAGCCTCTACTACACTTAATCTTTATTGGGAAAGAGTAATGTT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTCCCAAGCCTCTACTACACTTAATCTTTATTGGGAAAGAGTAATGTT  400

seq1  AGGAATTC  408
      ||||||||
seq2  AGGAATTC  408