BAC Information

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BAC

Clone NameB6Ng01-229E04
Chromosome5 (Build37)
Map Location 97,386,527 - 97,514,778
singlet/doubletdoublet
Overlap geneLOC670358, Bmp2k, Paqr3
Upstream geneCxcl13, EG666231, Cnot6l, LOC100040559, Mrpl1, Fras1, Anxa3, EG666266
Downstream geneLOC100040598, EG433923, EG666293, C80008, Gk2, Antxr2, EG435856, LOC666315, LOC666320
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-229E04.bB6Ng01-229E04.g
ACCGA042459GA042460
length1,0581,119
definitionB6Ng01-229E04.b B6Ng01-229E04.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(97,386,527 - 97,387,574)(97,513,643 - 97,514,778)
sequence
gaattcactccgtaggtcagcctggccttgagctcataagatcttcctga
ctctgcctcttgagtgctgggattagaggtacgagttttccatgcctagc
tagcaggcagtttattttagaaagtctcaacaaatgctgacgtttgtttg
tttgctttttttgttcttgttgttctatttggttttaaaattgcatttat
ttatttgaggagaggtgagatacatgccatgtcacatgtagaagtcagag
acaactgtgggggttgggctctgccagttcaccaagttctccaagagcac
acttaggtcataaagcttggcagcaagcgccttcagccacagagccatcc
aggtggccactgggatcgttttttttttttttttttttttaatgttatta
agtaacgtttaggtgcacttaaaaattatttaaaaatttaaaataaacag
tttaaaaagttttttttctctttttgttgttgttgctttgggttttgttg
tgttgctgctgctgctgctgctgttgctgctgttgctactgcagttgttg
ttgttgctattgctattattgttgctgttgttgttgctgatgctattgtt
gttgctgttgctattatggttgctgttgtttttgttgttgctgttgctgt
ttttgttgctgttgttgctgttgctgtttggttcaatattgcaaaatgaa
ctcaaagttttgtccatgataggtaagaaatcaaccactgagctatattt
ctagttcttgagttttaaaacacatgtatttttaaggaatcaaatggtag
atgaaaaccatattttcttttgttttctaaaaacaaaaaacaaaaaacaa
aaaacagaaattgaccattaggttgaaaattggccatttatgggccgttc
taccacacagtgtatttttttagtggtataactacatattaatatttctt
agaaatagtgggttttttttggttctcctgatcaataatatttattcttt
aatatcatgtaagtagtggtgatgattaaatttctgttcattgggctaac
cagattat
gaattcctaagggtatcagcccccttttaggatatcttcatcaccaggtc
ctctagattactgcacctctagctacacagatcctccagccagcagacat
caagaccatctcctcctgcgcattcattcatccattcattcactcccttc
tgtacccctcacaacggaactcggaacctccattatatggctagctacct
atcagaaatcttttattggccctgagacgttccaccctgtgtgtggtgta
ctgtcctgtcttgccttcagctacaactctgatgtcttctatggtactac
ctattacacgcatagctgaattctttctatgacagctcgggaactgagta
gcaacccaggtccttcaaactcgctatcagaatgaggaacccagcagaca
tgagggaatcaatgatgccatgctggcctaacatctctgctgctctgtag
catcacatcttacaactcacctgatggacccagcccacaggacagacctc
caagactacccctggacgatgccctgcacacgtggtacttgatgaactgg
tagaatccttgactgcaggcctgctccagtgttgtggctggccaaccatc
cctacttatcatatctcatcgtccttactctctgtttcctagctctgtgc
acatgtgtaaccaaaatgactgctccaagagtggcaactggtatatatag
aaagggatatcatgacaattcagacactatagggaggtacttttagctca
gaattcagtcacttgcattttcttactacctttaacaaacaaatgtctgt
tttcaggagtttgcactcagtgtcagtactcaaaacatttccaatgtgct
ggaaaactcacaggagggaaaatgggtgcataaatccaagcctacacctc
cagcagtcagtaaagacctcctttaagagaaggcagattgaccatgagaa
gagccgtacaaaggacagcttctagctgcttcagatgaagctctgggacc
ttgagatagtgaaactgggataatgtggctggacatgtcaggaggggctg
gtgctacactgctcagaacccatgtgaaagctacacgtcacacgctttgt
agcctcaggctggaaaaca
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr5_97386527_97387574
seq2: B6Ng01-229E04.b_46_1103

seq1  GAATTCACTCCGTAGGTCAGCCTGGCCTTGAGCTCATAAGATCTTCCTGA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCACTCCGTAGGTCAGCCTGGCCTTGAGCTCATAAGATCTTCCTGA  50

seq1  CTCTGCCTCTTGAGTGCTGGGATTAGAGGTACGAGTTTTCCATGCCTAGC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTGCCTCTTGAGTGCTGGGATTAGAGGTACGAGTTTTCCATGCCTAGC  100

seq1  TAGCAGGCAGTTTATTTTAGAAAGTCTCAACAAATGCTGACGTTTGTTTG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGCAGGCAGTTTATTTTAGAAAGTCTCAACAAATGCTGACGTTTGTTTG  150

seq1  TTTGCTTTTTTTGTTCTTGTTGTTCTATTTGGTTTTAAAATTGCATTTAT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGCTTTTTTTGTTCTTGTTGTTCTATTTGGTTTTAAAATTGCATTTAT  200

seq1  TTATTTGAGGAGAGGTGAGATACATGCCATGTCACATGTAGAAGTCAGAG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATTTGAGGAGAGGTGAGATACATGCCATGTCACATGTAGAAGTCAGAG  250

seq1  ACAACTGTGGGGGTTGGGCTCTGCCAGTTCACCAAGTTCTCCAAGAGCAC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAACTGTGGGGGTTGGGCTCTGCCAGTTCACCAAGTTCTCCAAGAGCAC  300

seq1  ACTTAGGTCATAAAGCTTGGCAGCAAGCGCCTTCAGCCACAGAGCCATCC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTAGGTCATAAAGCTTGGCAGCAAGCGCCTTCAGCCACAGAGCCATCC  350

seq1  AGGTGGCCACTGGGATCGTTTTTTTTTTTTTTTTTTTTTTAATGTTATTA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGTGGCCACTGGGATCGTTTTTTTTTTTTTTTTTTTTTTAATGTTATTA  400

seq1  AGTAACGTTTAGGTGCACTTAAAAATTATTTAAAAATTTAAAATAAACAG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTAACGTTTAGGTGCACTTAAAAATTATTTAAAAATTTAAAATAAACAG  450

seq1  TTTAAAAAGTTTTTTTTCTCTTTTTGTTGTTGTTGCTTTGGGTTTTGTTG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTAAAAAGTTTTTTTTCTCTTTTTGTTGTTGTTGCTTTGGGTTTTGTTG  500

seq1  TGTTGCTGCTGCTGCTGCTGCTGTTGCTGCTGTTGCTACTGCAGTTGTTG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTGCTGCTGCTGCTGCTGCTGTTGCTGCTGTTGCTACTGCAGTTGTTG  550

seq1  TTGTTGCTATTGCTATTATTGTTGCTGTTGTTGTTGCTGATGCTATTGTT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTTGCTATTGCTATTATTGTTGCTGTTGTTGTTGCTGATGCTATTGTT  600

seq1  GTTGCTGTTGCTATTATGGTTGCTGTTGTTTTTGTTGTTGCTGTTGCTGT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTGCTGTTGCTATTATGGTTGCTGTTGTTTTTGTTGTTGCTGTTGCTGT  650

seq1  TTTTGTTGCTGTTGTTGCTGTTGCTGTTTGGTTCAATATTGCAAAATGAA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTGTTGCTGTTGTTGCTGTTGCTGTTTGGTTCAATATTGCAAAATGAA  700

seq1  CTCAAAGTTTTGTCCATGATAGGTAAGAAATCAACCACTGAGCTATATTT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCAAAGTTTTGTCCATGATAGGTAAGAAATCAACCACTGAGCTATATTT  750

seq1  CTAGTTCTTGAGTTTTAAAACACATGTATTTTTAAGGAATCAAATGGTAG  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAGTTCTTGAGTTTTAAAACACATGTATTTTTAAGGAATCAAATGGTAG  800

seq1  ATGAAAACCATATTTTCTTTTGTTTTCTAAAAACAAAAAACAAAAAACAA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGAAAACCATATTTTCTTTTGTTTTCTAAAAACAAAAAACAAAAAACAA  850

seq1  AAAACAGAAATTGACCATTAGGTTGAAAATTGGCCA-TTAT-GGCCGTTC  898
      |||||||||||||||||||||||||||||||||||| |||| ||||||||
seq2  AAAACAGAAATTGACCATTAGGTTGAAAATTGGCCATTTATGGGCCGTTC  900

seq1  TACCACACAGGTGTATTTTTTTAGTGGTATAACTACATATTAATATTTCT  948
      ||||||||| ||||||||||||||||||||||||||||||||||||||||
seq2  TACCACACA-GTGTATTTTTTTAGTGGTATAACTACATATTAATATTTCT  949

seq1  TAGGAAATAGTGG--TTTTTTTTGTTCT-CTGATCA--TATATTTAATCT  993
      || ||||||||||  ||||||| ||||| |||||||   ||||||| |||
seq2  TA-GAAATAGTGGGTTTTTTTTGGTTCTCCTGATCAATAATATTTATTCT  998

seq1  TT-ATATCATGT-AGTAGT-GTGATGATT-AATTTCTGTTCA-TGGGCTA  1038
      || ||||||||| |||||| ||||||||| |||||||||||| |||||||
seq2  TTAATATCATGTAAGTAGTGGTGATGATTAAATTTCTGTTCATTGGGCTA  1048

seq1  ACAGGATTAT  1048
      ||  ||||||
seq2  ACCAGATTAT  1058

seq1: chr5_97513643_97514778
seq2: B6Ng01-229E04.g_65_1183 (reverse)

seq1  TGTTTTCCCAGCACTGAGGCTACAAAGCCCGTGTGAACGTGTAGCCTTTC  50
      |||||| ||||| ||||||||||||||  |||||| |||||||| |||||
seq2  TGTTTT-CCAGC-CTGAGGCTACAAAG--CGTGTG-ACGTGTAG-CTTTC  44

seq1  ACATGGGTTCTGAGCAGTGTAGCGGCCCAGCCCCCTCCTGACCATGTTCC  100
      |||||||||||||||||||||||   |||| |||||||||| |||| |||
seq2  ACATGGGTTCTGAGCAGTGTAGC--ACCAG-CCCCTCCTGA-CATG-TCC  89

seq1  AGCCACATTATCCCAGTTTCACTATCTCAAGGTCCCAGAGCTTTTCATCT  150
      |||||||||||||||||||||||||||||||||||||||||  |||||||
seq2  AGCCACATTATCCCAGTTTCACTATCTCAAGGTCCCAGAGC--TTCATCT  137

seq1  GAAGCAGCTAGAAGCTTGTCCTTTGTACGGCTCTTTCTCATGGTTCAATC  200
      ||||||||||||||| ||||||||||||||||| ||||||||| ||||| 
seq2  GAAGCAGCTAGAAGC-TGTCCTTTGTACGGCTC-TTCTCATGG-TCAAT-  183

seq1  CTGCCTTCTCCTTAAGGAGGTCTTTACTGACTGCTGGAGGTGTAGGCTTG  250
      |||||||||| | |||||||||||||||||||||||||||||||||||||
seq2  CTGCCTTCTCTTAAAGGAGGTCTTTACTGACTGCTGGAGGTGTAGGCTTG  233

seq1  GATTTATGCACCCATTTTCCCTCCTGTGAGTTTTCCAGCACATTGGAAAT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATTTATGCACCCATTTTCCCTCCTGTGAGTTTTCCAGCACATTGGAAAT  283

seq1  GTTTTGAGTACTGACACTGAGTGCAAACTCCTGAAAACAGACATTTGTTT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTTGAGTACTGACACTGAGTGCAAACTCCTGAAAACAGACATTTGTTT  333

seq1  GTTAAAGGTAGTAAGAAAATGCAAGTGACTGAATTCTGAGCTAAAAGTAC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTAAAGGTAGTAAGAAAATGCAAGTGACTGAATTCTGAGCTAAAAGTAC  383

seq1  CTCCCTATAGTGTCTGAATTGTCATGATATCCCTTTCTATATATACCAGT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCCCTATAGTGTCTGAATTGTCATGATATCCCTTTCTATATATACCAGT  433

seq1  TGCCACTCTTGGAGCAGTCATTTTGGTTACACATGTGCACAGAGCTAGGA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCCACTCTTGGAGCAGTCATTTTGGTTACACATGTGCACAGAGCTAGGA  483

seq1  AACAGAGAGTAAGGACGATGAGATATGATAAGTAGGGATGGTTGGCCAGC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACAGAGAGTAAGGACGATGAGATATGATAAGTAGGGATGGTTGGCCAGC  533

seq1  CACAACACTGGAGCAGGCCTGCAGTCAAGGATTCTACCAGTTCATCAAGT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACAACACTGGAGCAGGCCTGCAGTCAAGGATTCTACCAGTTCATCAAGT  583

seq1  ACCACGTGTGCAGGGCATCGTCCAGGGGTAGTCTTGGAGGTCTGTCCTGT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCACGTGTGCAGGGCATCGTCCAGGGGTAGTCTTGGAGGTCTGTCCTGT  633

seq1  GGGCTGGGTCCATCAGGTGAGTTGTAAGATGTGATGCTACAGAGCAGCAG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGCTGGGTCCATCAGGTGAGTTGTAAGATGTGATGCTACAGAGCAGCAG  683

seq1  AGATGTTAGGCCAGCATGGCATCATTGATTCCCTCATGTCTGCTGGGTTC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATGTTAGGCCAGCATGGCATCATTGATTCCCTCATGTCTGCTGGGTTC  733

seq1  CTCATTCTGATAGCGAGTTTGAAGGACCTGGGTTGCTACTCAGTTCCCGA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCATTCTGATAGCGAGTTTGAAGGACCTGGGTTGCTACTCAGTTCCCGA  783

seq1  GCTGTCATAGAAAGAATTCAGCTATGCGTGTAATAGGTAGTACCATAGAA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTGTCATAGAAAGAATTCAGCTATGCGTGTAATAGGTAGTACCATAGAA  833

seq1  GACATCAGAGTTGTAGCTGAAGGCAAGACAGGACAGTACACCACACACAG  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACATCAGAGTTGTAGCTGAAGGCAAGACAGGACAGTACACCACACACAG  883

seq1  GGTGGAACGTCTCAGGGCCAATAAAAGATTTCTGATAGGTAGCTAGCCAT  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTGGAACGTCTCAGGGCCAATAAAAGATTTCTGATAGGTAGCTAGCCAT  933

seq1  ATAATGGAGGTTCCGAGTTCCGTTGTGAGGGGTACAGAAGGGAGTGAATG  1000
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAATGGAGGTTCCGAGTTCCGTTGTGAGGGGTACAGAAGGGAGTGAATG  983

seq1  AATGGATGAATGAATGCGCAGGAGGAGATGGTCTTGATGTCTGCTGGCTG  1050
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGGATGAATGAATGCGCAGGAGGAGATGGTCTTGATGTCTGCTGGCTG  1033

seq1  GAGGATCTGTGTAGCTAGAGGTGCAGTAATCTAGAGGACCTGGTGATGAA  1100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGGATCTGTGTAGCTAGAGGTGCAGTAATCTAGAGGACCTGGTGATGAA  1083

seq1  GATATCCTAAAAGGGGGCTGATACCCTTAGGAATTC  1136
      ||||||||||||||||||||||||||||||||||||
seq2  GATATCCTAAAAGGGGGCTGATACCCTTAGGAATTC  1119