BAC Information

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BAC

Clone NameB6Ng01-229K17
Chromosome5 (Build37)
Map Location 9,980,996 - 9,982,015
singlet/doubletsinglet
Overlap genenone
Upstream geneCrot, 4930420K17Rik, Dmtf1, LOC654361, 9330182L06Rik, Grm3, LOC100042768
Downstream geneLOC625446, LOC435832, LOC100041395, LOC381612, EG625586, LOC242809, LOC623849, LOC100041408, LOC667880, EG667888
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-229K17.bB6Ng01-229K17.g
ACCGA042743GA042744
length1,0811,076
definitionB6Ng01-229K17.b B6Ng01-229K17.g
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
gaattctactgctgggcataggttctgcccttaatagtagtttgcttctc
ttctaagactgcattggaaaaaaaatcatttgcaagtagattccaattgg
atctaccttttggcttagatatagtagagtctcctctcagctgtgggatc
caatctgttgcagagaatgtgcaggccctgtgatggcccttatagtcttt
ttgtttcttctttcaaagagttctctaagcctttggatgaggaatttgat
ggagctatacaatctaggcctgagtattgcagggtctcttactttctgca
cattggatgttggattctgtatttgttcccatctattgcaggaggaagct
tctctggtgatggcttaaggaggcactggtctatgagtaaagaagaatgt
catttggagtcatttttattgcatcctttcactgtttgtggtattccact
tatattccttttgatcatcatgtgccctttcaagtgtctgttttcagcaa
aacataacatgccctctcacaatacaacttccaaaaaaatatcatgtgac
acaactgggttgttcaagaaaccagaaatttctacttcatatatgtaaat
ttcatgatttcattttttaaatggctgagtaatattttattgtgtaaata
tatgatatattctttatcctttcattcactgatgaatgaacatctaggat
gtttctatttcctgatattataaataaagcagtaatgaacatgattggat
gcctctgtagtaagatgaaggatcctttgggtgtagctggatcttgagtt
acactgattctcatgttcctggaagaaataccacactgatttccataatg
tctatacaagtttgcactcctaacagcaacctcatcagtatgagttgtct
catcagtacaatttattgctctttgcaatcttgatgagtagaaaataaaa
tctccagctgctcatgtaacagatgatggccttgtctggcatcagtggga
ggagagatcctagtcctgtgaaggcacatgttcctagtgtacggggatgc
caggttggaaaggaaggaatgtgggtgggcg
gaattctaaacccttgatcttggtcaaggacgcccttggactgttgggac
actggtggaaggaaggcgttagccatgtcagaattcaattttaaaaagca
cttataataggaaagtactgaaagagagcacgtaaatccatatactagac
taatgcgggaatggaactcgggagtaaaaaattactgtataggtagggaa
tgctagactccaggaggagagctttcttgaaactcttttgcctcatgagt
gacttttaagcctttcgacttgtccagcttactcgactggagagcgtagc
aaaaacccaaaactatacaaagaatcaataaaaccaggaactggttcttt
gagaaaatcaacaagatagataaacctttagccagactaaccagagggca
cagagacagtatccaaattaacaaaataagaaataaaaagggagacataa
caacaaaatatatcttaaaataatgaaaaattcataaacaaaataaaaga
ataaaattaaaaaacaattacatgtatgtataatatatttttatgtatat
atgcattacataatcttaaatgaaaagttatgatataacactgtgagaca
agtaatctccaaagatgccattaagtttgttttgtataggcaatctactg
ttaggcatgagggcataaggcatacacttaaaatttcttttcccccagtg
agactctgttagaagaaactattcatttgcaagtagttatcaagtggaga
ttgctccttggttagggacaggggcatttggtcacttctcctttaagctc
tagaactccacttggtgcagaaaaatgcagctttcctcatgctgcctaag
tctccgtgagtcatatgtgggttgatcttgactgagagagcactattttt
cttggtgtctcccttccctctgctcttacattcttgtggctccttcttct
gtatgaatcctgaagggaaggtattttttagagacatcccatttatgatc
gaatatccagggtctcctcactctcagcacaatttctgctgtgtgttgcc
tgtatttggtcccacatctccagcag
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr5_9980996_9982015
seq2: B6Ng01-229K17.g_124_1143

seq1  GGAAGGAAGGCGTTAGCCATGTCAGAATTCAATTTTAAAAAGCACTTATA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAAGGAAGGCGTTAGCCATGTCAGAATTCAATTTTAAAAAGCACTTATA  50

seq1  ATAGGAAAGTACTGAAAGAGAGCACGTAAATCCATATACTAGACTAATGC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAGGAAAGTACTGAAAGAGAGCACGTAAATCCATATACTAGACTAATGC  100

seq1  GGGAATGGAACTCGGGAGTAAAAAATTACTGTATAGGTAGGGAATGCTAG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGAATGGAACTCGGGAGTAAAAAATTACTGTATAGGTAGGGAATGCTAG  150

seq1  ACTCCAGGAGGAGAGCTTTCTTGAAACTCTTTTGCCTCATGAGTGACTTT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTCCAGGAGGAGAGCTTTCTTGAAACTCTTTTGCCTCATGAGTGACTTT  200

seq1  TAAGCCTTTCGACTTGTCCAGCTTACTCGACTGGAGAGCGTAGCAAAAAC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAGCCTTTCGACTTGTCCAGCTTACTCGACTGGAGAGCGTAGCAAAAAC  250

seq1  CCAAAACTATACAAAGAATCAATAAAACCAGGAACTGGTTCTTTGAGAAA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAAAACTATACAAAGAATCAATAAAACCAGGAACTGGTTCTTTGAGAAA  300

seq1  ATCAACAAGATAGATAAACCTTTAGCCAGACTAACCAGAGGGCACAGAGA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCAACAAGATAGATAAACCTTTAGCCAGACTAACCAGAGGGCACAGAGA  350

seq1  CAGTATCCAAATTAACAAAATAAGAAATAAAAAGGGAGACATAACAACAA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGTATCCAAATTAACAAAATAAGAAATAAAAAGGGAGACATAACAACAA  400

seq1  AATATATCTTAAAATAATGAAAAATTCATAAACAAAATAAAAGAATAAAA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATATATCTTAAAATAATGAAAAATTCATAAACAAAATAAAAGAATAAAA  450

seq1  TTAAAAAACAATTACATGTATGTATAATATATTTTTATGTATATATGCAT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAAAAAACAATTACATGTATGTATAATATATTTTTATGTATATATGCAT  500

seq1  TACATAATCTTAAATGAAAAGTTATGATATAACACTGTGAGACAAGTAAT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACATAATCTTAAATGAAAAGTTATGATATAACACTGTGAGACAAGTAAT  550

seq1  CTCCAAAGATGCCATTAAGTTTGTTTTGTATAGGCAATCTACTGTTAGGC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCCAAAGATGCCATTAAGTTTGTTTTGTATAGGCAATCTACTGTTAGGC  600

seq1  ATGAGGGCATAAGGCATACACTTAAAATTTCTTTTCCCCCAGTGAGACTC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGAGGGCATAAGGCATACACTTAAAATTTCTTTTCCCCCAGTGAGACTC  650

seq1  TGTTAGAAGAAACTATTCATTTGCAAGTAGTTATCAAGTGGAGATTGCTC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTAGAAGAAACTATTCATTTGCAAGTAGTTATCAAGTGGAGATTGCTC  700

seq1  CTTGGTTAGGGACAGGGGCATTTGGTCACTTCTCCTTTAAGCTCTAGAAC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTGGTTAGGGACAGGGGCATTTGGTCACTTCTCCTTTAAGCTCTAGAAC  750

seq1  TCCACTTGGTGCAGAAAAATGCAGGCTTTCCTCATGCTGCCTAAGTCTCC  800
      ||||||||||||||||||||||| ||||||||||||||||||||||||||
seq2  TCCACTTGGTGCAGAAAAATGCA-GCTTTCCTCATGCTGCCTAAGTCTCC  799

seq1  GTGAGTTCATATGTGGGTTGATCTTGACTGAGAGAGCACTA-TTTTCTTG  849
      ||||| ||||||||||||||||||||||||||||||||||| ||||||||
seq2  GTGAG-TCATATGTGGGTTGATCTTGACTGAGAGAGCACTATTTTTCTTG  848

seq1  GTGTCTCCCTTCCCTCTGCTCTTACATTCTTTGTGGCTCC-TCTTCTGTA  898
      ||||||||||||||||||||||||||||| |||||||||| |||||||||
seq2  GTGTCTCCCTTCCCTCTGCTCTTACATTC-TTGTGGCTCCTTCTTCTGTA  897

seq1  TGAATCCTG-AGGGAAGGTATTTTTTAGAGACATCCCATTTATGATCGAA  947
      ||||||||| ||||||||||||||||||||||||||||||||||||||||
seq2  TGAATCCTGAAGGGAAGGTATTTTTTAGAGACATCCCATTTATGATCGAA  947

seq1  TATTCCAGGGTCT-CTCACTCTCAGCACAATTTCTGGCTGTGTGTTG-CT  995
      || |||||||||| ||||||||||||||||||||| ||||||||||| ||
seq2  TA-TCCAGGGTCTCCTCACTCTCAGCACAATTTCT-GCTGTGTGTTGCCT  995

seq1  GTATTTGTTCCCACATCTCCAGCAG  1020
      ||||||| |||||||||||||||||
seq2  GTATTTGGTCCCACATCTCCAGCAG  1020