BAC Information

Click to search

BAC

Clone NameB6Ng01-230K09
Chromosome5 (Build37)
Map Location 18,898,308 - 19,005,351
singlet/doubletdoublet
Overlap geneMagi2
Upstream geneLOC668167, 4921504A21Rik
Downstream genenone
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-230K09.bB6Ng01-230K09.g
ACCGA043457GA043458
length1,118297
definitionB6Ng01-230K09.b B6Ng01-230K09.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(18,898,308 - 18,899,415)(19,005,055 - 19,005,351)
sequence
gaattcattgcagagtgcctgctacatactttgcacttcataaatattac
ttaccttccatccttcttatatgactattaaaagaaacagaaaatgtcac
ctatactgtcaggttattttgccatatcttcttggaagaacaagaagttc
ttaaattatacatatatatatatatgaatttactaggaaaagtccatggg
actgagttataattccagtctacatattcttatataatatattctgtggt
ggaacacttgagacaatgtatttaaactgttttataaaccagtttgcagt
aattcaggtacagtcttttctaaagaatttcaaagatttgaaagagacaa
atagagaacgacatagagcaacccaaagaggcataaacaagagaggtggt
cttaaataatgaagcagaaaaatatacacatagagacctagggtggttta
aatatggtctgtcttctctgaagtacatgatgtaaattaatttgcattat
aagaatttaagaactcaagtcaagtgagatctttaaaaggcaaatatagc
tccacactcatgaattcattaattcccttcatgctattcagttgtcaaca
cacactatctttagttagtcttctataaaagccagttggattaaatctct
tcccttgattttgtcatataaagttttctgtattctttgcactccttcag
tagagtggccatgtcaagtgacagaactcaactttggaatataaccataa
gaccaaaaaaacttccttttatataatttatgcaacctacagtaatcaac
aatagaaatttacctgaaacagaaagaaagattattttttaagtccatct
tggacatacacatctatctagcatacactgcctttattctcagttttgac
atttctctgaatagctcaatatatgttttcctgtttgctcctttattgtg
tcacccatggtattcatcgtctatgtagagtaacaatcaaagcttcttca
atggtgtttacctcctcatacctccaccccacctcttagctcattcacgt
actttgccttttctatgctagacctgttctcacccactggtggggactcc
atgctctttctaaacact

aattcttagttatctggatttcagtttttgttttagttaataaattcctc
tgaaggactctgtactacctactactattactttctttttttttctgatt
ctcaaaattgagtaaaaatttatcagatttcttttaccttacaatgttcc
tgtcaatgtcaggactaagagcaactaattaaatttacattaatcaacat
tctactactggaagcattgcaaagaagaagaagaagaagaagaagaagaa
gaagaagaagaagaaggaggaggaggaggaggaggaggaggaggagg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr5_18898308_18899415
seq2: B6Ng01-230K09.b_48_1165

seq1  GAATTCATTGCAGAGTGCCTGCTACATACTTTGCACTTCATAAATATTAC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCATTGCAGAGTGCCTGCTACATACTTTGCACTTCATAAATATTAC  50

seq1  TTACCTTCCATCCTTCTTATATGACTATTAAAAGAAACAGAAAATGTCAC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTACCTTCCATCCTTCTTATATGACTATTAAAAGAAACAGAAAATGTCAC  100

seq1  CTATACTGTCAGGTTATTTTGCCATATCTTCTTGGAAGAACAAGAAGTTC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTATACTGTCAGGTTATTTTGCCATATCTTCTTGGAAGAACAAGAAGTTC  150

seq1  TTAAATTATACATATATATATATATGAATTTACTAGGAAAAGTCCATGGG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAAATTATACATATATATATATATGAATTTACTAGGAAAAGTCCATGGG  200

seq1  ACTGAGTTATAATTCCAGTCTACATATTCTTATATAATATATTCTGTGGT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTGAGTTATAATTCCAGTCTACATATTCTTATATAATATATTCTGTGGT  250

seq1  GGAACACTTGAGACAATGTATTTAAACTGTTTTATAAACCAGTTTGCAGT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAACACTTGAGACAATGTATTTAAACTGTTTTATAAACCAGTTTGCAGT  300

seq1  AATTCAGGTACAGTCTTTTCTAAAGAATTTCAAAGATTTGAAAGAGACAA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTCAGGTACAGTCTTTTCTAAAGAATTTCAAAGATTTGAAAGAGACAA  350

seq1  ATAGAGAACGACATAGAGCAACCCAAAGAGGCATAAACAAGAGAGGTGGT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAGAGAACGACATAGAGCAACCCAAAGAGGCATAAACAAGAGAGGTGGT  400

seq1  CTTAAATAATGAAGCAGAAAAATATACACATAGAGACCTAGGGTGGTTTA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTAAATAATGAAGCAGAAAAATATACACATAGAGACCTAGGGTGGTTTA  450

seq1  AATATGGTCTGTCTTCTCTGAAGTACATGATGTAAATTAATTTGCATTAT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATATGGTCTGTCTTCTCTGAAGTACATGATGTAAATTAATTTGCATTAT  500

seq1  AAGAATTTAAGAACTCAAGTCAAGTGAGATCTTTAAAAGGCAAATATAGC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGAATTTAAGAACTCAAGTCAAGTGAGATCTTTAAAAGGCAAATATAGC  550

seq1  TCCACACTCATGAATTCATTAATTCCCTTCATGCTATTCAGTTGTCAACA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCACACTCATGAATTCATTAATTCCCTTCATGCTATTCAGTTGTCAACA  600

seq1  CACACTATCTTTAGTTAGTCTTCTATAAAAGCCAGTTGGATTAAATCTCT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACACTATCTTTAGTTAGTCTTCTATAAAAGCCAGTTGGATTAAATCTCT  650

seq1  TCCCTTGATTTTGTCATATAAAGTTTTCTGTATTCTTTGCACTCCTTCAG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCCTTGATTTTGTCATATAAAGTTTTCTGTATTCTTTGCACTCCTTCAG  700

seq1  TAGAGTGGCCATGTCAAGTGACAGAACTCAACTTTGGAATATAACCATAA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGAGTGGCCATGTCAAGTGACAGAACTCAACTTTGGAATATAACCATAA  750

seq1  GACCAAAAAAACTTCCTTTTATATAATTTATGCAACCTACAGTAATCAAC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACCAAAAAAACTTCCTTTTATATAATTTATGCAACCTACAGTAATCAAC  800

seq1  AATAGAAATTTACCTGAAACAGAAAGAAAGATTATTTTTTAAGTCCATCT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATAGAAATTTACCTGAAACAGAAAGAAAGATTATTTTTTAAGTCCATCT  850

seq1  TGGACATACACATCTATCTAGCATACACTGCCTTTATTCTCAGTTTTGAC  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGACATACACATCTATCTAGCATACACTGCCTTTATTCTCAGTTTTGAC  900

seq1  ATTTCTCTGAATAGCTCAATATATGTTTTCCTGTTTGCTCCTTTATTGTG  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTCTCTGAATAGCTCAATATATGTTTTCCTGTTTGCTCCTTTATTGTG  950

seq1  TCACCCATGGTATTCATCGTCTATGTAGAGTAACAATCAAAGC-TCTTCA  999
      ||||||||||||||||||||||||||||||||||||||||||| ||||||
seq2  TCACCCATGGTATTCATCGTCTATGTAGAGTAACAATCAAAGCTTCTTCA  1000

seq1  AT-GTGTTTACCTCCTCATA-CTCCACCC--ACTCTTAGCTCATTCACGT  1045
      || ||||||||||||||||| ||||||||   ||||||||||||||||||
seq2  ATGGTGTTTACCTCCTCATACCTCCACCCCACCTCTTAGCTCATTCACGT  1050

seq1  ACTTTGCCTTTTCTATGCTAGAACTGTTCTCA-CCACTG--TGGGACTCC  1092
      |||||||||||||||||||||| ||||||||| ||||||   ||||||||
seq2  ACTTTGCCTTTTCTATGCTAGACCTGTTCTCACCCACTGGTGGGGACTCC  1100

seq1  ATGCTC-TTCT-AACACT  1108
      |||||| |||| ||||||
seq2  ATGCTCTTTCTAAACACT  1118


seq1: chr5_19005055_19005351
seq2: B6Ng01-230K09.g_73_369 (reverse)

seq1  CCTCCTCCTCCTCCTCCTCCTCCTCCTCCTCCTTCTTCTTCTTCTTCTTC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTCCTCCTCCTCCTCCTCCTCCTCCTCCTCCTTCTTCTTCTTCTTCTTC  50

seq1  TTCTTCTTCTTCTTCTTCTTCTTCTTTGCAATGCTTCCAGTAGTAGAATG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTTCTTCTTCTTCTTCTTCTTCTTTGCAATGCTTCCAGTAGTAGAATG  100

seq1  TTGATTAATGTAAATTTAATTAGTTGCTCTTAGTCCTGACATTGACAGGA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGATTAATGTAAATTTAATTAGTTGCTCTTAGTCCTGACATTGACAGGA  150

seq1  ACATTGTAAGGTAAAAGAAATCTGATAAATTTTTACTCAATTTTGAGAAT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATTGTAAGGTAAAAGAAATCTGATAAATTTTTACTCAATTTTGAGAAT  200

seq1  CAGAAAAAAAAAGAAAGTAATAGTAGTAGGTAGTACAGAGTCCTTCAGAG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGAAAAAAAAAGAAAGTAATAGTAGTAGGTAGTACAGAGTCCTTCAGAG  250

seq1  GAATTTATTAACTAAAACAAAAACTGAAATCCAGATAACTAAGAATT  297
      |||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTTATTAACTAAAACAAAAACTGAAATCCAGATAACTAAGAATT  297


| Home | SequenceCutter | Blast | Download |