BAC Information

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BAC

Clone NameB6Ng01-231P02
Chromosome5 (Build37)
Map Location 81,389,370 - 81,496,224
singlet/doubletdoublet
Overlap geneLphn3
Upstream geneLOC100039506, LOC100039384
Downstream genenone
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-231P02.bB6Ng01-231P02.g
ACCGA044405GA044406
length1,174430
definitionB6Ng01-231P02.b B6Ng01-231P02.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(81,495,043 - 81,496,224)(81,389,370 - 81,389,805)
sequence
gaattcatatatttatacatgtatatttctgtgtagaaagagaaataagc
atgtgcattctatacttattggtttatagtaatgcagactctgtagaaaa
agaaaaaaaatctgcatcctacccataattttgttcaaatgacatttact
gagattctatccaatgagtattaatatcaacaaaacatctttagaaacaa
aatatgtgcagcgagcagatgatctgatatacaagcttaatccgcactac
tctactgttagatcaatagaaaataatccctcccctgtaatcatatttac
tactacataaatcactgttactggagacagccattaaactttcacagata
aaggtctcaaactgaactctataacctgaaaacattcattctatacaata
atgacagcctgggagagttaagtagatctgatggtaatgagtgatccaag
tctttgcagtttgtcaattaatgaatatgtttaaaatgcaacacaaattt
agcttactgtagaagaaaaagttaataaaacccagggcagtaattcactg
cagtattacagtagtaaagttaagctgaataaaatcagtcctaataatgt
ggttagttttattagattgctaagggaaacaatatcctttaaatgatttt
atagtgacagtattaaaatcaaccttgaggtccattcaaaaatcagacaa
agtagccttttaatattacttgtcaaaattcccacgggcataaatgttta
tgaaggaagaggaccaaaactggattcttgaatagtttgctttcaaaata
aaataagggatttaatgaaatgcaagttttagaaatacaaatttctaact
taactataaaaatcacatttcgtttaaatatacaccatttgtactcatag
ataccactaaaggggctccatctttctctcttccacaaacttctcccaag
agaagtgtaactctaagcaatcttttcttcattcattccttagcatgcct
gcgagaggagaagaataactttgtggacagacttgaaagtcagtcattga
tgtcatattcttcacttcagaaaaaaatggataaaaatatccaatcatac
atgacttgaatatattcttgcctttgcctgaatcattagctcttggaaag
aaagctacgacgcacttgacttca

agtatccactttctctcccaggtccctccctccctccccacttgtgattg
ctttcttctttctattttatgtatgtgagtaactgttactgtattcagac
acaccagaagaggacatcagatctcattatagatggttgtgagccaccat
gtggttgctgggaattgaactcaagacttctcgaagagaagtcagtgctc
ttaaactctgagtattctcttcagcccatgctttcattttcttaatattt
tcctgtttatttaacttaaaaaaataacgtgtaaaagtgatcaaatatat
cttttttagataatcagactagccttcatcctagtcaatctgtattaaaa
tggaacaacttaggaaaagaggtaagaaaggcaaactagtagagtgagag
ttaagaaaaagtgaaggaagggagggagga
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr5_81495043_81496224
seq2: B6Ng01-231P02.b_44_1217 (reverse)

seq1  TGAAGTCAAGTGGCTGTCTGTAGGCTTCTCTTTCAAGAGCTAAATGTATC  50
      ||||||||||||   ||| ||||  |||| || |||||||| |||| || 
seq2  TGAAGTCAAGTG--CGTC-GTAGCTTTCT-TTCCAAGAGCT-AATG-ATT  44

seq1  CAGGCCAAAGCAAGAATATATCCAAGTCATGTATGAATGGATATTTTATC  100
      ||||| || |||||||||||| |||||||||||||| ||||||||||   
seq2  CAGGCAAAGGCAAGAATATATTCAAGTCATGTATGATTGGATATTTTTAT  94

seq1  CCATTTTTTTCTGAAGTGAAGAATATTGACATCAATGACTGACTTTCAAG  150
      ||||||||||||||||||||||||| ||||||||||||||||||||||| 
seq2  CCATTTTTTTCTGAAGTGAAGAATA-TGACATCAATGACTGACTTTCAA-  142

seq1  GTCTGTCCACAAAGTTAT--CTCTCCTCTCGCAGGCATTGCTAAGGAATG  198
      ||||||||||||||||||   |||||||||||||||| ||||||||||||
seq2  GTCTGTCCACAAAGTTATTCTTCTCCTCTCGCAGGCA-TGCTAAGGAATG  191

seq1  AATGAAGAAAAGATTGCCTAGAGTTACACTTCTCTTGGGAGAAGTTTGTG  248
      ||||||||||||||||| ||||||||||||||||||||||||||||||||
seq2  AATGAAGAAAAGATTGCTTAGAGTTACACTTCTCTTGGGAGAAGTTTGTG  241

seq1  GAAGAGAGAAAGATGGAGCCCCCTTAGTGGTATCTATGAGTACAAATGGT  298
      |||||||||||||||||||||| |||||||||||||||||||||||||||
seq2  GAAGAGAGAAAGATGGAGCCCCTTTAGTGGTATCTATGAGTACAAATGGT  291

seq1  GTATATTTTAAACGAAATGTGATTTTTATAGTTAAGTTAGAAATTTGTAT  348
      ||||| ||||||||||||||||||||||||||||||||||||||||||||
seq2  GTATA-TTTAAACGAAATGTGATTTTTATAGTTAAGTTAGAAATTTGTAT  340

seq1  TTCTAAAACTTGCATTTCATTAAATCCCTTATTTTATTTTGAAAGCAAAC  398
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTAAAACTTGCATTTCATTAAATCCCTTATTTTATTTTGAAAGCAAAC  390

seq1  TATTCAAGAATCCAGTTTTGGTCCTCTTCCTTCATAAACATTTATGCCCG  448
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTCAAGAATCCAGTTTTGGTCCTCTTCCTTCATAAACATTTATGCCCG  440

seq1  TGGGAATTTTGACAAGTAATATTAAAAGGCTACTTTGTCTGATTTTTGAA  498
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGGAATTTTGACAAGTAATATTAAAAGGCTACTTTGTCTGATTTTTGAA  490

seq1  TGGACCTCAAGGTTGATTTTAATACTGTCACTATAAAATCATTTAAAGGA  548
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGACCTCAAGGTTGATTTTAATACTGTCACTATAAAATCATTTAAAGGA  540

seq1  TATTGTTTCCCTTAGCAATCTAATAAAACTAACCACATTATTAGGACTGA  598
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTGTTTCCCTTAGCAATCTAATAAAACTAACCACATTATTAGGACTGA  590

seq1  TTTTATTCAGCTTAACTTTACTACTGTAATACTGCAGTGAATTACTGCCC  648
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTATTCAGCTTAACTTTACTACTGTAATACTGCAGTGAATTACTGCCC  640

seq1  TGGGTTTTATTAACTTTTTCTTCTACAGTAAGCTAAATTTGTGTTGCATT  698
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGGTTTTATTAACTTTTTCTTCTACAGTAAGCTAAATTTGTGTTGCATT  690

seq1  TTAAACATATTCATTAATTGACAAACTGCAAAGACTTGGATCACTCATTA  748
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAAACATATTCATTAATTGACAAACTGCAAAGACTTGGATCACTCATTA  740

seq1  CCATCAGATCTACTTAACTCTCCCAGGCTGTCATTATTGTATAGAATGAA  798
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCATCAGATCTACTTAACTCTCCCAGGCTGTCATTATTGTATAGAATGAA  790

seq1  TGTTTTCAGGTTATAGAGTTCAGTTTGAGACCTTTATCTGTGAAAGTTTA  848
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTTTCAGGTTATAGAGTTCAGTTTGAGACCTTTATCTGTGAAAGTTTA  840

seq1  ATGGCTGTCTCCAGTAACAGTGATTTATGTAGTAGTAAATATGATTACAG  898
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGGCTGTCTCCAGTAACAGTGATTTATGTAGTAGTAAATATGATTACAG  890

seq1  GGGAGGGATTATTTTCTATTGATCTAACAGTAGAGTAGTGCGGATTAAGC  948
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGAGGGATTATTTTCTATTGATCTAACAGTAGAGTAGTGCGGATTAAGC  940

seq1  TTGTATATCAGATCATCTGCTCGCTGCACATATTTTGTTTCTAAAGATGT  998
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTATATCAGATCATCTGCTCGCTGCACATATTTTGTTTCTAAAGATGT  990

seq1  TTTGTTGATATTAATACTCATTGGATAGAATCTCAGTAAATGTCATTTGA  1048
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGTTGATATTAATACTCATTGGATAGAATCTCAGTAAATGTCATTTGA  1040

seq1  ACAAAATTATGGGTAGGATGCAGATTTTTTTTCTTTTTCTACAGAGTCTG  1098
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAAAATTATGGGTAGGATGCAGATTTTTTTTCTTTTTCTACAGAGTCTG  1090

seq1  CATTACTATAAACCAATAAGTATAGAATGCACATGCTTATTTCTCTTTCT  1148
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTACTATAAACCAATAAGTATAGAATGCACATGCTTATTTCTCTTTCT  1140

seq1  ACACAGAAATATACATGTATAAATATATGAATTC  1182
      ||||||||||||||||||||||||||||||||||
seq2  ACACAGAAATATACATGTATAAATATATGAATTC  1174


seq1: chr5_81389370_81389805
seq2: B6Ng01-231P02.g_72_507

seq1  GAATTCAGTATCCACTTTCTCTCCCAGGTCCCTCCCTCCCTCCCCACTTG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAGTATCCACTTTCTCTCCCAGGTCCCTCCCTCCCTCCCCACTTG  50

seq1  TGATTGCTTTCTTCTTTCTATTTTATGTATGTGAGTAACTGTTACTGTAT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGATTGCTTTCTTCTTTCTATTTTATGTATGTGAGTAACTGTTACTGTAT  100

seq1  TCAGACACACCAGAAGAGGACATCAGATCTCATTATAGATGGTTGTGAGC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGACACACCAGAAGAGGACATCAGATCTCATTATAGATGGTTGTGAGC  150

seq1  CACCATGTGGTTGCTGGGAATTGAACTCAAGACTTCTCGAAGAGAAGTCA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACCATGTGGTTGCTGGGAATTGAACTCAAGACTTCTCGAAGAGAAGTCA  200

seq1  GTGCTCTTAAACTCTGAGTATTCTCTTCAGCCCATGCTTTCATTTTCTTA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGCTCTTAAACTCTGAGTATTCTCTTCAGCCCATGCTTTCATTTTCTTA  250

seq1  ATATTTTCCTGTTTATTTAACTTAAAAAAATAACGTGTAAAAGTGATCAA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATTTTCCTGTTTATTTAACTTAAAAAAATAACGTGTAAAAGTGATCAA  300

seq1  ATATATCTTTTTTAGATAATCAGACTAGCCTTCATCCTAGTCAATCTGTA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATATCTTTTTTAGATAATCAGACTAGCCTTCATCCTAGTCAATCTGTA  350

seq1  TTAAAATGGAACAACTTAGGAAAAGAGGTAAGAAAGGCAAACTAGTAGAG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAAAATGGAACAACTTAGGAAAAGAGGTAAGAAAGGCAAACTAGTAGAG  400

seq1  TGAGAGTTAAGAAAAAGTGAAGGAAGGGAGGGAGGA  436
      ||||||||||||||||||||||||||||||||||||
seq2  TGAGAGTTAAGAAAAAGTGAAGGAAGGGAGGGAGGA  436


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