BAC Information

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BAC

Clone NameB6Ng01-232P17
Chromosome5 (Build37)
Map Location 5,510,571 - 5,511,679
singlet/doubletsinglet
Overlap geneCldn12
Upstream geneFzd1, LOC667678, Pftk1, 1700015F17Rik
Downstream geneGtpbp10, LOC667699, EG667705, A330021E22Rik, Steap2, Steap1, LOC727711, LOC546854, LOC100041208
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-232P17.bB6Ng01-232P17.g
ACCGA045177GA045178
length1,1081,181
definitionB6Ng01-232P17.b B6Ng01-232P17.g
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
gaattcatcagcatagcacaagtgtctcaaatttgatcaagtcttaatct
gcaagtcagcaatattttttagttttagcactaaatagatcatttcctat
tattccctctatcaccctttgagacattatgtcaccagtgggatgagact
tactatcaaattatagatgtatagagttaataacaggataaaaagtgaaa
tgaccaaaggcggttacaagatgctaaacatgaattccagcactagggtt
gaacctgaatcttgaggccattaatgttctttttctgaaacacaattcat
ggtatctctgatgactctataaaactgttagtccttgagagtttaattaa
gcatatgccaccataccaagttcagagaagtgatataaaatataacatca
acttgaaggaaggtataaatacacttagcactgaagtaagtgcttggtct
gcccacgtccattgatgctgtctggtgtctgtcagctgagggcggcagga
gagtaactaacaaggctggatgttctgactgtgcttctcgctgcctttgg
gctgcagggatcagaggcgcagacaggctgcttggagaaacgctgattac
cttgaaattgtgagtatttgttccccatctctggaatcaagaatgaaatt
gtgattgagctgagagtttgagagtatttgctgatggaagcttgaagctt
taaaagaaacaggaaaaaccctttccttaccgctctgactttacctaacc
cagggcagtaacttcttaataaatggtttactgccttatgtcgcttaatg
gaataacagtgatcacttaatacatggtaatcatacagttggttaaccgt
cagtattttgtatttgcatgaaacagcatactttttattaacacactaga
ccagtgtcctttcgggacattttccacatgcatcgcatgccaacagatac
ttgatgcatgactgactccttagtcatagctgtttcctttgtctagccca
cattgtgaatacatgtatggccttgcgtacacgcccaccttcctcattca
tataatcctaaatgatttgtgtgcccagtgctatgcaaatggctcatcat
tgtggggg
gaattctcacctgaggaataccgaatggcagagaagcacctgaaaaaatg
ttcaacatccttaatcatcagggaaatgcaaatcaaaacaaccctgagat
tccacctcacaccagtcagaatgtctaagatcaaaaattcaggtgacagc
agatgctggcgaggatgtggagaaagaggaacactcctccattgttggtg
ggattgcaggcttgtacaaccactctggaaatcagtctggcggttcctca
gaaaattggacatagtactacccggaggatccagcaatacctctcctggg
catatatccagaagatgccccaactggtaagaaggacacatgctccacta
tgttcatagcagccttatttataatagccagaagctggaaagaacccaga
tgcccctcaacagaggaatggatacagaaaatgtggtacatctacacaat
ggagtactactcagctattaaaaaaatgaatttatgaaattcctagccaa
atggatggacctggagggcatcatcctgagtgaggtaacacattcacaaa
ggaactcacacaatatgtactcactgataagtggatattagcccaaaacc
taggatatccaagatataagatacaatttcctaaacacatgaaactcaag
aagaatgaagactgaagtgtggacactatgcccctccttagaagtgggaa
caaaacacccttggaaggagttacagagacaaagtttggagctgagatga
aaggatggaccatgtagagactgccttatccagggatccaccccataatc
agcatccaaacgctgacaccattgcatacactagcaagattttatcgaaa
gggacccagatgtagctgtctcttgtgagactatgccggggccctagcaa
accacagaagtggatgcccacagtcagctaatggatggatcacagggctc
ccaatggagagctagagaaagtacccaaggagctaaagggatctgcaacc
ctataggtggatcacatatgaactaaccagtaccccgagctctgacttct
agctgcatatgtatccaaagattgcctagtcgcaatcactggaagagagt
ccaattgacacatcaaactttattgtcagaacaggacctaggtcaaatgg
gaagttgggcggctataggggaaaatgtgtg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr5_5510571_5511679
seq2: B6Ng01-232P17.b_43_1150 (reverse)

seq1  CCCCCACATATGATGAGCAATTTGCATAGCACCTGGCACACAAATCATTT  50
      |||||||| ||||||||| |||||||||||||  ||||||||||||| ||
seq2  CCCCCACA-ATGATGAGCCATTTGCATAGCACTGGGCACACAAATCA-TT  48

seq1  TAGGATTATATGAATGA-GAAGTGGGCCGTGTACCGCAAGGCCATACAAT  99
      ||||||||||||||||| ||||  || |||||| ||||||||||||| ||
seq2  TAGGATTATATGAATGAGGAAGGTGGGCGTGTA-CGCAAGGCCATAC-AT  96

seq1  GTATTCACAAATGTGGGCTAGACAAA-GAAACAGCTATGACTAAGGAGTC  148
      |||||||| ||||||||||||||||| |||||||||||||||||||||||
seq2  GTATTCAC-AATGTGGGCTAGACAAAGGAAACAGCTATGACTAAGGAGTC  145

seq1  AGTCATGCATCAAGTATCTG-TGGCATGCGATGCATGTGGAAAATGTCCC  197
      |||||||||||||||||||| |||||||||||||||||||||||||||||
seq2  AGTCATGCATCAAGTATCTGTTGGCATGCGATGCATGTGGAAAATGTCCC  195

seq1  GAAAGGACACTGGTCTAGTGTGTTAAT-AAAAGTATGCTGTTTCATGCAA  246
      ||||||||||||||||||||||||||| ||||||||||||||||||||||
seq2  GAAAGGACACTGGTCTAGTGTGTTAATAAAAAGTATGCTGTTTCATGCAA  245

seq1  ATACAAAATACTGACGGTTAACCAACTGTATGATTACCATGTATTAAGTG  296
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATACAAAATACTGACGGTTAACCAACTGTATGATTACCATGTATTAAGTG  295

seq1  ATCACTGTTATTCCATTAAGCGACATAAGGCAGTAAACCATTTATTAAGA  346
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCACTGTTATTCCATTAAGCGACATAAGGCAGTAAACCATTTATTAAGA  345

seq1  AGTTACTGCCCTGGGTTAGGTAAAGTCAGAGCGGTAAGGAAAGGGTTTTT  396
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTACTGCCCTGGGTTAGGTAAAGTCAGAGCGGTAAGGAAAGGGTTTTT  395

seq1  CCTGTTTCTTTTAAAGCTTCAAGCTTCCATCAGCAAATACTCTCAAACTC  446
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGTTTCTTTTAAAGCTTCAAGCTTCCATCAGCAAATACTCTCAAACTC  445

seq1  TCAGCTCAATCACAATTTCATTCTTGATTCCAGAGATGGGGAACAAATAC  496
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGCTCAATCACAATTTCATTCTTGATTCCAGAGATGGGGAACAAATAC  495

seq1  TCACAATTTCAAGGTAATCAGCGTTTCTCCAAGCAGCCTGTCTGCGCCTC  546
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCACAATTTCAAGGTAATCAGCGTTTCTCCAAGCAGCCTGTCTGCGCCTC  545

seq1  TGATCCCTGCAGCCCAAAGGCAGCGAGAAGCACAGTCAGAACATCCAGCC  596
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGATCCCTGCAGCCCAAAGGCAGCGAGAAGCACAGTCAGAACATCCAGCC  595

seq1  TTGTTAGTTACTCTCCTGCCGCCCTCAGCTGACAGACACCAGACAGCATC  646
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTTAGTTACTCTCCTGCCGCCCTCAGCTGACAGACACCAGACAGCATC  645

seq1  AATGGACGTGGGCAGACCAAGCACTTACTTCAGTGCTAAGTGTATTTATA  696
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGGACGTGGGCAGACCAAGCACTTACTTCAGTGCTAAGTGTATTTATA  695

seq1  CCTTCCTTCAAGTTGATGTTATATTTTATATCACTTCTCTGAACTTGGTA  746
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTCCTTCAAGTTGATGTTATATTTTATATCACTTCTCTGAACTTGGTA  745

seq1  TGGTGGCATATGCTTAATTAAACTCTCAAGGACTAACAGTTTTATAGAGT  796
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGTGGCATATGCTTAATTAAACTCTCAAGGACTAACAGTTTTATAGAGT  795

seq1  CATCAGAGATACCATGAATTGTGTTTCAGAAAAAGAACATTAATGGCCTC  846
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATCAGAGATACCATGAATTGTGTTTCAGAAAAAGAACATTAATGGCCTC  845

seq1  AAGATTCAGGTTCAACCCTAGTGCTGGAATTCATGTTTAGCATCTTGTAA  896
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGATTCAGGTTCAACCCTAGTGCTGGAATTCATGTTTAGCATCTTGTAA  895

seq1  CCGCCTTTGGTCATTTCACTTTTTATCCTGTTATTAACTCTATACATCTA  946
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCGCCTTTGGTCATTTCACTTTTTATCCTGTTATTAACTCTATACATCTA  945

seq1  TAATTTGATAGTAAGTCTCATCCCACTGGTGACATAATGTCTCAAAGGGT  996
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATTTGATAGTAAGTCTCATCCCACTGGTGACATAATGTCTCAAAGGGT  995

seq1  GATAGAGGGAATAATAGGAAATGATCTATTTAGTGCTAAAACTAAAAAAT  1046
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATAGAGGGAATAATAGGAAATGATCTATTTAGTGCTAAAACTAAAAAAT  1045

seq1  ATTGCTGACTTGCAGATTAAGACTTGATCAAATTTGAGACACTTGTGCTA  1096
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTGCTGACTTGCAGATTAAGACTTGATCAAATTTGAGACACTTGTGCTA  1095

seq1  TGCTGATGAATTC  1109
      |||||||||||||
seq2  TGCTGATGAATTC  1108