BAC Information

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BAC

Clone NameB6Ng01-234L12
Chromosome6 (Build37)5 (Build37)
Map Location 29,741,279 - 29,741,77680,260,646 - 80,261,741
singlet/doubletsingletsinglet
Overlap gene4631427C17Rik
Upstream geneSnd1, Lrrc4, LOC100041367, Lep, Rbm28, D330027H18Rik, Impdh1, 2310016C08Rik, AI507611, BC048651, Calu, Opn1sw, 4921511K06Rik, Flnc, Atp6v1f, EG668210, Crim2, Irf5, Tnpo3, Tspan33, Smo
Downstream geneD330017J20Rik, 1700023L04Rik, 1700080G18Rik, Nrf1, Ube2h, Zc3hc1, 2410127E18Rik, 2700094F01Rik, 1700025E21Rik, Cpa2, Cpa4, Cpa5, Cpa1, Tsga14, Mest, Copg2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-234L12.bB6Ng01-234L12.g
ACCGA046403GA046404
length1,0211,089
definitionB6Ng01-234L12.b B6Ng01-234L12.g
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(29,741,279 - 29,741,776)(80,260,646 - 80,261,741)
sequence
gaattctatcaggttttgaaagtagagttaaacccagaaatagaaacaag
aaatcgtataaactcaacaagaaagaaaattacagaactgtttcatttac
taacttagttgcaaaactattcaataaaatatttgcaagctaattacaag
aacccattacaaggatcacctagcatggtcaattatccctcattccagag
atgaaaagatgggtcaacatatataaaaccataaatgtcacccaccatat
acatggacaggcaaaagttacaaaaatatttcattagattaagaaaagag
ctggagagatggctcagtggttaagagcactgactgctctcccaaagatc
ctgagatcaattcccagcaaccatatggtggctcacaaccatctgcaatg
tgatctgatgccctcttttggtgtgtttgaagacaacttcagtgtactca
taatatacgtaaaataaataaatacatctttaaaaagaaaaaaaaagaaa
aggactttgacaaaatccacaccctttcatcataccttttggggagacta
gggatacaaggtgcatgcctcaaaacaatggagccaattaacaataagaa
cacatccaatatcaacctaagttgatagaaacttaactcatttgcactaa
aaccaggaagaagtcaagattgctaaatctacctgtagctgttgaatata
gcacttaaagagtaataaaactgaagtagacactgaaagggatacaaaca
caaagggaagatttcagaatatctttatttgtgggtcatatgatggtaaa
cattaataaccccaaaacttccaccaggaaaccatacctgataaacacat
tcattaaaggtaacaggagacataattaacacacaaaatcagtagtcttt
ctatatacaaatggcagacagaaaaaaaaatttttctccatagcctcaaa
aaatattttgggaaattataactaagaaagtgaaagatgtataataatag
tcatgagtgataaatcataca
gaattctttatttctctctgttaccccagtttttaattaggttatttggt
ttgtttgaagtctaaaaaagaaatagaaaaaaaaaaaaaaaagaaagtca
acttaatatcaaacatagtgagcctcaaaacgattgatttcttattttaa
gattatatataaacacaaagaaaatacagtatgacaaatgaagagatgaa
tgcactgcaaaggaaagaaagtcaaacattcacacaagactaccaaaagg
tatgtagggcaagggagttcctctttacctagcacatccctactgacagc
ttgacttagtatcttagccacaaattaagtcaccatggcaatcctgggaa
attgacctaatttgtgagactcttttcagaagagataacattctcttgtt
gatcacatgggtatggaaatagtgcagtcccacaaggaacaactgagtca
tgaatgtcacactgtgaagacattcattcaagtagttcatcttcattctg
agcccattgtgctgacctcatgacatggatcacaaagcaggcattacaag
aactcatctaaaaaattcctcttgatttctatagaaatctttatttttta
actccaaactagaagcttatagtaaaaaaagaataattaaacacattata
catatatataattaccattctgagttctctgatagagataaaaataaaat
ataataactataaagccaaaagtaaaaggttaaaccttgttcatctgaac
tattaattttcaaatgagaatagaaaagaaataatattaatgtggggtta
aataccacatgttctaagtttcttttgtgaataaagtaatgacaattaat
gtaaatgatattttcaataaacatccgctgaatgaagggacgatggaacc
tatcacccttgtatgtttacctatttttttaaatgtaaaatgaagcctca
gtgatgctttggatatatcacaatccaattttaaacaaatgccacgaatg
tgtgtctatcagtgctgttctgcagagctacacattagattgctttatgt
acctttgctgctgggtgagaataggtctaggtataggaa
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr6_29741279_29741776
seq2: B6Ng01-234L12.b_110_384 (reverse)

seq1  AGAGCAGTCAGTGCTCTTAA-CACTGAGCCATTTCTCCAGGCCTCCCTTT  49
      |||||||||||||||||||| ||||||||||| |||||||    | ||||
seq2  AGAGCAGTCAGTGCTCTTAACCACTGAGCCATCTCTCCAG----CTCTTT  46

seq1  TCATTTCTGATTTTATTAATTTGGATACTGTCTCTGTGCCCTCTGGTTAT  99
      ||     | || | || ||     |||   | | |||  |         |
seq2  TC----TTAATCTAATGAA-----ATA---TTTTTGTAAC---------T  75

seq1  TCTGGCTCAGGGTTTATCTATCTTGTTGATTTTCTCAAAGAACCATCTCC  149
      | || ||    ||  || ||| | || | |         ||  ||     
seq2  TTTGCCT----GTCCATGTATATGGTGGGT---------GA--CA-----  105

seq1  TGTTTTTGTTGATTCTTTGTATAGTTCTTTTTGTTTCTATTTGGTTGATT  199
        ||| || |     ||| ||||     | |||   |   ||  || || 
seq2  --TTTATGGT-----TTTATATA-----TGTTGACCCATCTT--TTCATC  141

seq1  TCAGCTCTGAGTTTGATTATT--TCCTGCCCTTTACTCCTT---TTGGG-  243
      || |   ||||   ||| |||   | |||    |  |||||    |||| 
seq2  TCTGGAATGAG--GGATAATTGACCATGCTAGGTGATCCTTGTAATGGGT  189

seq1  ---TGT-GTTTGCTT-----CTTTCTGTTGTAGAGTTTTCAGGTGTGCTG  284
         |||  || ||||       || | ||| | |||||       |||  
seq2  TCTTGTAATTAGCTTGCAAATATTTTATTGAATAGTTT-------TGCAA  232

seq1  TCAAGCT-GCTAGTGTAAGCTGTCTCCAGTTTCTGTTTGGAGGCATTTCA  333
        ||| | |  | || ||        ||| ||||||         |||| 
seq2  CTAAGTTAGTAAATGAAA--------CAG-TTCTGT------AATTTTCT  267

seq1  TTCTTGATTCTCTTAGTGGTTCTTCATATGGTTTTACTTATCAGATCCAT  383
      |||||| |                                          
seq2  TTCTTGTT------------------------------------------  275

seq1  TAAACTATCCTGATGATCCTCTTCTGACCCTATTTATTATCTATAGGTAA  433
                                                        
seq2  --------------------------------------------------  275

seq1  TATCTCCCAAATAAGAGGTCATATTCCAAGATACTGCTTAACCAATAACA  483
                                                        
seq2  --------------------------------------------------  275

seq1  ATTTTCTTTCTTGTT  498
                     
seq2  ---------------  275

seq1: chr5_80260646_80261741
seq2: B6Ng01-234L12.g_65_1153

seq1  GAATTCTTTATTTCTCTCTGTTACCCCAGTTTTTAATTAGGTTATTTGGT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTTTATTTCTCTCTGTTACCCCAGTTTTTAATTAGGTTATTTGGT  50

seq1  TTGTTTGAAGTCTAAAAAAGAAATAGAAAAAAAAAAAAAAAAGAAAGTCA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTTTGAAGTCTAAAAAAGAAATAGAAAAAAAAAAAAAAAAGAAAGTCA  100

seq1  ACTTAATATCAAACATAGTGAGCCTCAAAACGATTGATTTCTTATTTTAA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTAATATCAAACATAGTGAGCCTCAAAACGATTGATTTCTTATTTTAA  150

seq1  GATTATATATAAACACAAAGAAAATACAGTATGACAAATGAAGAGATGAA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATTATATATAAACACAAAGAAAATACAGTATGACAAATGAAGAGATGAA  200

seq1  TGCACTGCAAAGGAAAGAAAGTCAAACATTCACACAAGACTACCAAAAGG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCACTGCAAAGGAAAGAAAGTCAAACATTCACACAAGACTACCAAAAGG  250

seq1  TATGTAGGGCAAGGGAGTTCCTCTTTACCTAGCACATCCCTACTGACAGC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATGTAGGGCAAGGGAGTTCCTCTTTACCTAGCACATCCCTACTGACAGC  300

seq1  TTGACTTAGTATCTTAGCCACAAATTAAGTCACCATGGCAATCCTGGGAA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGACTTAGTATCTTAGCCACAAATTAAGTCACCATGGCAATCCTGGGAA  350

seq1  ATTGACCTAATTTGTGAGACTCTTTTCAGAAGAGATAACATTCTCTTGTT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTGACCTAATTTGTGAGACTCTTTTCAGAAGAGATAACATTCTCTTGTT  400

seq1  GATCACATGGGTATGGAAATAGTGCAGTCCCACAAGGAACAACTGAGTCA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATCACATGGGTATGGAAATAGTGCAGTCCCACAAGGAACAACTGAGTCA  450

seq1  TGAATGTCACACTGTGAAGACATTCATTCAAGTAGTTCATCTTCATTCTG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAATGTCACACTGTGAAGACATTCATTCAAGTAGTTCATCTTCATTCTG  500

seq1  AGCCCATTGTGCTGACCTCATGACATGGATCACAAAGCAGGCATTACAAG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCCCATTGTGCTGACCTCATGACATGGATCACAAAGCAGGCATTACAAG  550

seq1  AACTCATCTAAAAAATTCCTCTTGATTTCTATAGAAATCTTTATTTTTTA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTCATCTAAAAAATTCCTCTTGATTTCTATAGAAATCTTTATTTTTTA  600

seq1  ACTCCAAACTAGAAGCTTATAGTAAAAAAAGAATAATTAAACACATTATA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTCCAAACTAGAAGCTTATAGTAAAAAAAGAATAATTAAACACATTATA  650

seq1  CATATATATAATTACCATTCTGAGTTCTCTGATAGAGATAAAAATAAAAT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATATATATAATTACCATTCTGAGTTCTCTGATAGAGATAAAAATAAAAT  700

seq1  ATAATAACTATAAAGCCAAAAGTAAAAGGTTAAACCTTGTTCATCTGAAC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAATAACTATAAAGCCAAAAGTAAAAGGTTAAACCTTGTTCATCTGAAC  750

seq1  TATTAATTTTCAAATGAGAATAGAAAAGAAATAATATTAATGTGGGGTTA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTAATTTTCAAATGAGAATAGAAAAGAAATAATATTAATGTGGGGTTA  800

seq1  AATACCACATGTTCTAAGTTTCTTTTGTGAATAAAGTAATGACAATTAAT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATACCACATGTTCTAAGTTTCTTTTGTGAATAAAGTAATGACAATTAAT  850

seq1  GTAAATGATATTTTCAATAAACATCCGCTGAATGAAGGGACGATGGAACC  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAAATGATATTTTCAATAAACATCCGCTGAATGAAGGGACGATGGAACC  900

seq1  TATCACCCTTGTATGTTTACCTATTTTTTTAAAATGTAAAATGAAGCCTC  950
      |||||||||||||||||||||||||||||| |||||||||||||||||||
seq2  TATCACCCTTGTATGTTTACCTATTTTTTT-AAATGTAAAATGAAGCCTC  949

seq1  AGTGATGCTTTGGATATATCACAAATCCAATTTTAAACAAATGCCACGAA  1000
      |||||||||||||||||||||| |||||||||||||||||||||||||||
seq2  AGTGATGCTTTGGATATATCAC-AATCCAATTTTAAACAAATGCCACGAA  998

seq1  TGTGTGTCCTATCAGTGCTGTTCTTGCAGAGCTACACATTTAGAATTGCT  1050
      ||||||| ||||||||||||||| |||||||||||||| |||| ||||||
seq2  TGTGTGT-CTATCAGTGCTGTTC-TGCAGAGCTACACA-TTAG-ATTGCT  1044

seq1  TTATGTACCTTTGCTGCTGGGTGAGAATAGGTTCTAGTTATAGGAA  1096
      ||||||||||||||||||||||||||||||| ||||| ||||||||
seq2  TTATGTACCTTTGCTGCTGGGTGAGAATAGG-TCTAGGTATAGGAA  1089