BAC Information

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BAC

Clone NameB6Ng01-235J16
Chromosome5 (Build37)
Map Location 128,128,898 - 128,345,322
singlet/doubletdoublet
Overlap geneGlt1d1, Tmem132d
Upstream geneLOC100040327, Tmem132c, Slc15a4
Downstream geneFzd10, LOC100040398, Piwil1, Rimbp2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-235J16.bB6Ng01-235J16.g
ACCGA047038GA047039
length5121,074
definitionB6Ng01-235J16.b B6Ng01-235J16.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(128,128,898 - 128,129,415)(128,344,252 - 128,345,322)
sequence
aaagatactttaaggctgaacaccatggggcagtctggaggcagaggcag
gcggatctctgagtctacagaacaagactggctttagaagctggtgatcc
atcggggatccatcccataatcagccaccaaacccagacaatattgcata
tgccagcaagattttgatgaagggaccctggtatagctgtctcgtatgag
gctatgtcagtgcctggcaaatacagaagtagatgctcacagtcatctat
tggatggaacacagggcccccaatggagaagttagagaaagcacccaagg
agctgaaggggtctgcaaccctataggtggaacaacaaaatgaactaacc
agtacccccagagctcgtgtctctagctgcatatgtaacagaagatggcc
tagtcggccatcactgggaagagaggccccttggtattgcaaactttata
tgccccagtacaggggaacaccagggccaagaagcgggagtgggtgggta
ggggagcaggga
gaattcactccatcactgcccccattacatcctccctacaaaatccaggt
gttgacagaaatggcctcttggcagctggctgttatcaacatttggcttc
ctgtgaccaggtgaaagaccaggccttttgcgagggaggcaggaagagac
atcctcacgttcaggtgacaggtgacttggggattagctaatggacatat
gtttgttcttccaggaggcagagatcctgaacacagccatcctcactgga
aagacggtggctgtccctgtgaaggtgatctctgtggaggaagatggcac
agtacaaggtcttttggactcagtggagtgcaggtcatctgacgaagacg
tggttaaggcaagtggatggttcctcgcccattaggaagcccatagttac
acgggcatgggtgtttatccccagctgagatctgtggggtctgcagggtt
cctcccattctggttttcttgcaatttaaatcaggagtgtctcccacccc
aacgccaaataggatatacactgctataacccatgcctgggctgtgagac
atttcttctgtgcctaagtcaccaacatggtccccccccctagaccctgg
gagttggcagagggatatggggaccatatacaccctcccaagcctagact
gaaaaacagaggtttctttccacccacttgggctgtgaaggtatagaaag
gagagtcaggacctggactgggtacacaggcagccatgcttcgtgatgta
ttcacagccaaatagcttgtgtgaaatcgataaaggcataaagtttatga
ttacaaccaactttgatttacaaaaccagccagcggagagaggagttgac
tcctcaacccttgggccctcccacacgattgcacaagagcgagggacaat
cacacactatgccccatcccttttgttccgttccctgcctcattttttcc
tcccaacctcttctttctcttttttaaattgaaagcaaaattgatccaag
gcaaataataaacaaaaaaaagcatgctgggggaaagcctggagggcaag
gtactccagttcgggctgtgccag
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr5_128128898_128129415
seq2: B6Ng01-235J16.b_49_566

seq1  GAATTCAAAGATACTTTAAGGCTGAACACCATGGGGCAGTCTGGAGGCAG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAAAGATACTTTAAGGCTGAACACCATGGGGCAGTCTGGAGGCAG  50

seq1  AGGCAGGCGGATCTCTGAGTCTACAGAACAAGACTGGCTTTAGAAGCTGG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGCAGGCGGATCTCTGAGTCTACAGAACAAGACTGGCTTTAGAAGCTGG  100

seq1  TGATCCATCGGGGATCCATCCCATAATCAGCCACCAAACCCAGACAATAT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGATCCATCGGGGATCCATCCCATAATCAGCCACCAAACCCAGACAATAT  150

seq1  TGCATATGCCAGCAAGATTTTGATGAAGGGACCCTGGTATAGCTGTCTCG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCATATGCCAGCAAGATTTTGATGAAGGGACCCTGGTATAGCTGTCTCG  200

seq1  TATGAGGCTATGTCAGTGCCTGGCAAATACAGAAGTAGATGCTCACAGTC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATGAGGCTATGTCAGTGCCTGGCAAATACAGAAGTAGATGCTCACAGTC  250

seq1  ATCTATTGGATGGAACACAGGGCCCCCAATGGAGAAGTTAGAGAAAGCAC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTATTGGATGGAACACAGGGCCCCCAATGGAGAAGTTAGAGAAAGCAC  300

seq1  CCAAGGAGCTGAAGGGGTCTGCAACCCTATAGGTGGAACAACAAAATGAA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAAGGAGCTGAAGGGGTCTGCAACCCTATAGGTGGAACAACAAAATGAA  350

seq1  CTAACCAGTACCCCCAGAGCTCGTGTCTCTAGCTGCATATGTAACAGAAG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAACCAGTACCCCCAGAGCTCGTGTCTCTAGCTGCATATGTAACAGAAG  400

seq1  ATGGCCTAGTCGGCCATCACTGGGAAGAGAGGCCCCTTGGTATTGCAAAC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGGCCTAGTCGGCCATCACTGGGAAGAGAGGCCCCTTGGTATTGCAAAC  450

seq1  TTTATATGCCCCAGTACAGGGGAACACCAGGGCCAAGAAGCGGGAGTGGG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTATATGCCCCAGTACAGGGGAACACCAGGGCCAAGAAGCGGGAGTGGG  500

seq1  TGGGTAGGGGAGCAGGGA  518
      ||||||||||||||||||
seq2  TGGGTAGGGGAGCAGGGA  518

seq1: chr5_128344252_128345322
seq2: B6Ng01-235J16.g_69_1142 (reverse)

seq1  CTGGCACAGCCAG-ACTGGAGT-CCTTGCCCT-CAGGC-TTCTCCCAGCA  46
      ||||||||||| | |||||||| ||||||||| ||||| ||| |||||||
seq2  CTGGCACAGCCCGAACTGGAGTACCTTGCCCTCCAGGCTTTCCCCCAGCA  50

seq1  TGCTTTTTTTTTTTTTTTTTTTTTTTTGCCTTGGATCATTTTTGCTTTCA  96
      |||     |||||||| ||| || |||||||||||||| |||||||||||
seq2  TGC-----TTTTTTTTGTTTATTATTTGCCTTGGATCAATTTTGCTTTCA  95

seq1  ATTTTAAAAAAGAGAAAGAAGAGGTTGGGAGGAAAAATGGAGGCAGGGAA  146
      | |||||||||||||||||||||||||||||||||||  |||||||||||
seq2  A-TTTAAAAAAGAGAAAGAAGAGGTTGGGAGGAAAAAATGAGGCAGGGAA  144

seq1  CGGAAC-AAAGGGATGGGGCATAGTGTGTGA-TGTCCCTCGCTCTTGTGC  194
      |||||| |||||||||||||||||||||||| ||||||||||||||||||
seq2  CGGAACAAAAGGGATGGGGCATAGTGTGTGATTGTCCCTCGCTCTTGTGC  194

seq1  AATCGTGTGGGAGGG-CCAGGGGTTG-GGAGTCAACTCCTCTCTCCGCTG  242
      ||||||||||||||| ||| |||||| |||||||||||||||||||||||
seq2  AATCGTGTGGGAGGGCCCAAGGGTTGAGGAGTCAACTCCTCTCTCCGCTG  244

seq1  GCTGGTTTTGTAAATCAAAGTTGGTTGTAATCATAAACTTTATGCCTTTA  292
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTGGTTTTGTAAATCAAAGTTGGTTGTAATCATAAACTTTATGCCTTTA  294

seq1  TCGATTTCACACAAGCTATTTGGCTGTGAATACATCACGAAGCATGGCTG  342
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCGATTTCACACAAGCTATTTGGCTGTGAATACATCACGAAGCATGGCTG  344

seq1  CCTGTGTA-CCAGTCCAGGTCCTGACTCTCCTTTCTATACCTTCACAGCC  391
      |||||||| |||||||||||||||||||||||||||||||||||||||||
seq2  CCTGTGTACCCAGTCCAGGTCCTGACTCTCCTTTCTATACCTTCACAGCC  394

seq1  CAAGTGGGTGGAAAGAAACCTCTGTTTTTCAGTCTAGGCTTGGGAGGGTG  441
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAGTGGGTGGAAAGAAACCTCTGTTTTTCAGTCTAGGCTTGGGAGGGTG  444

seq1  TATATGGTCCCCATATCCCTCTGCCAACTCCCAGGGTCTAGGGGGGGGGA  491
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATATGGTCCCCATATCCCTCTGCCAACTCCCAGGGTCTAGGGGGGGGGA  494

seq1  CCATGTTGGTGACTTAGGCACAGAAGAAATGTCTCACAGCCCAGGCATGG  541
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCATGTTGGTGACTTAGGCACAGAAGAAATGTCTCACAGCCCAGGCATGG  544

seq1  GTTATAGCAGTGTATATCCTATTTGGCGTTGGGGTGGGAGACACTCCTGA  591
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTATAGCAGTGTATATCCTATTTGGCGTTGGGGTGGGAGACACTCCTGA  594

seq1  TTTAAATTGCAAGAAAACCAGAATGGGAGGAACCCTGCAGACCCCACAGA  641
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTAAATTGCAAGAAAACCAGAATGGGAGGAACCCTGCAGACCCCACAGA  644

seq1  TCTCAGCTGGGGATAAACACCCATGCCCGTGTAACTATGGGCTTCCTAAT  691
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCAGCTGGGGATAAACACCCATGCCCGTGTAACTATGGGCTTCCTAAT  694

seq1  GGGCGAGGAACCATCCACTTGCCTTAACCACGTCTTCGTCAGATGACCTG  741
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGCGAGGAACCATCCACTTGCCTTAACCACGTCTTCGTCAGATGACCTG  744

seq1  CACTCCACTGAGTCCAAAAGACCTTGTACTGTGCCATCTTCCTCCACAGA  791
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACTCCACTGAGTCCAAAAGACCTTGTACTGTGCCATCTTCCTCCACAGA  794

seq1  GATCACCTTCACAGGGACAGCCACCGTCTTTCCAGTGAGGATGGCTGTGT  841
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATCACCTTCACAGGGACAGCCACCGTCTTTCCAGTGAGGATGGCTGTGT  844

seq1  TCAGGATCTCTGCCTCCTGGAAGAACAAACATATGTCCATTAGCTAATCC  891
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGGATCTCTGCCTCCTGGAAGAACAAACATATGTCCATTAGCTAATCC  894

seq1  CCAAGTCACCTGTCACCTGAACGTGAGGATGTCTCTTCCTGCCTCCCTCG  941
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAAGTCACCTGTCACCTGAACGTGAGGATGTCTCTTCCTGCCTCCCTCG  944

seq1  CAAAAGGCCTGGTCTTTCACCTGGTCACAGGAAGCCAAATGTTGATAACA  991
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAAAGGCCTGGTCTTTCACCTGGTCACAGGAAGCCAAATGTTGATAACA  994

seq1  GCCAGCTGCCAAGAGGCCATTTCTGTCAACACCTGGATTTTGTAGGGAGG  1041
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCAGCTGCCAAGAGGCCATTTCTGTCAACACCTGGATTTTGTAGGGAGG  1044

seq1  ATGTAATGGGGGCAGTGATGGAGTGAATTC  1071
      ||||||||||||||||||||||||||||||
seq2  ATGTAATGGGGGCAGTGATGGAGTGAATTC  1074