BAC Information

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BAC

Clone NameB6Ng01-236N24
Chromosome5 (Build37)
Map Location 84,401,673 - 84,483,927
singlet/doubletdoublet
Overlap genenone
Upstream geneLOC100039434, Srd5a2l2, LOC100039608, LOC231368
Downstream geneEpha5, LOC100039489
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-236N24.bB6Ng01-236N24.g
ACCGA047985GA047986
length1,1201,054
definitionB6Ng01-236N24.b B6Ng01-236N24.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(84,401,673 - 84,402,795)(84,482,868 - 84,483,927)
sequence
gaattccaaatgtcacacaatcacagaaactgcagctggtaaaatcatgc
ccttgccagagcatgaagcaaatcatagtcagctgctggggaaaatctga
aaaaaaaccccatattccaggcctagggttaaaatgaaagcataatctta
tcatatttctatggtttttaaagaacacataattccaaaattatcactgt
gcagaaacttctgagctttctgtaacaataaatgtagtaatatataggaa
agcgtttttataaagtacaaagttcacaagtaaggtagaatagtaataat
tgttataagataattgaagttataattatgtcttatgttcttgttagata
ctaaacataaatgtgtttttaaaatgtttttcctaattaatattgagaga
aatggaaagggagagaaaaagcacccacatgctatggctcatgcatagag
gtcagaacacagacagcaggagctaaggttgtagttatctgtgagctgcc
caatgtgagtgctgggaaccaaactcagatgctcagctagagcagcaagc
actctaaaattttttttattagaaattttcttcatttgcatttcaaatgc
tatcctaaaagtccattataccctccccctagccctgctcccctgctcac
ccactcgcacttcttggccctggcattcccctgtactaaggcatataaag
tttgcaagaccaatgggcctctctttccaatgatggccaactaggccatc
ttctgatacatatgcagctagggacacgagctctggggggtactggttag
ttcatattgttgttccacctatagggttgcagatccctttagctccttgg
gtactttctctagctcctccattgggggccctggggctccatccaataga
tgactgtgagcatccgcttctgtaattgccaggcactggcagagcctcac
acagagagctatatcatggtcctttcagcaaaatcagcagcaagcacttt
taaccagtgatccatcttctttagctctatctgaagctcttactacttat
ttttttatactatgtgttccaaattttagtatacacatgaatgagttatt
gactgtgtgtatttattatg

gaattcaggaaggataaccagttttgtattggttcccatctgcatttgtt
tgtgctttcagtttgtgtacatgtttttgtagtgtaagatattaaatttt
atattttttcagaaaataaaaaacatttgaatatagaaaaaattgattgt
cctacttggtatcccctaatatattaaatggacagcctttttataggaat
tttattctcagaaaatgtttgcttttctgagttataaatgtgattacttt
atgaagttataaagttttgagttataaagatgatcatatacattctccac
ataaaacatattgctgaatatacattcaagcgatttggcacaaagacact
gactgagattacagaaccttacctttcatttatggtgacaatgtaatcca
aaatgcacttaaggaaaacaaaacaccaaaacagaaacaaacaaacaaac
aaaaaaacagaaaccacataaagaagtaaataaaaatcaaaaattatatg
ctatttgtatcacctacaaaagaacacatttttgcgactgatgtcagatg
gagacaagctcatcactaggctctgctatctgctctgtcactacgtaaga
ataaaaaatttacacaagaaggggaataagaagcaaggctcattatttgt
aagtatgatatcataatgatctttgaaaaatgacaagaaagacctctatt
ctagggattgaattgtgtttgtacttgggggaaattacaacatagaaaaa
caacacactgcacttatagaataaaaataagtaaagctgacatttaaaat
ttggaagaattaggattctttgctgactcagcgtttattttcatatgtta
ctcacaactcggtgtcatttagacttacactgttcttactgtattacaga
gttaaagatcctgtttaaatcagtttcctgatctatattcactcttcact
aaacagaagtaatagggtagcaagtaattaatggagaagaaattctagat
tgaatgtcacttaaccctttggagatgctatgcatactatgacatccatg
gcta
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr5_84401673_84402795
seq2: B6Ng01-236N24.b_44_1163

seq1  GAATTCCAAATGTCACACAATCACAGAAACTGCAGCTGGTAAAATCATGC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCAAATGTCACACAATCACAGAAACTGCAGCTGGTAAAATCATGC  50

seq1  CCTTGCCAGAGCATGAAGCAAATCATAGTCAGCTGCTGGGGAAAATCTGA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTGCCAGAGCATGAAGCAAATCATAGTCAGCTGCTGGGGAAAATCTGA  100

seq1  AAAAAAACCCCATATTCCAGGCCTAGGGTTAAAATGAAAGCATAATCTTA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAAAACCCCATATTCCAGGCCTAGGGTTAAAATGAAAGCATAATCTTA  150

seq1  TCATATTTCTATGGTTTTTAAAGAACACATAATTCCAAAATTATCACTGT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATATTTCTATGGTTTTTAAAGAACACATAATTCCAAAATTATCACTGT  200

seq1  GCAGAAACTTCTGAGCTTTCTGTAACAATAAATGTAGTAATATATAGGAA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAGAAACTTCTGAGCTTTCTGTAACAATAAATGTAGTAATATATAGGAA  250

seq1  AGCGTTTTTATAAAGTACAAAGTTCACAAGTAAGGTAGAATAGTAATAAT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCGTTTTTATAAAGTACAAAGTTCACAAGTAAGGTAGAATAGTAATAAT  300

seq1  TGTTATAAGATAATTGAAGTTATAATTATGTCTTATGTTCTTGTTAGATA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTATAAGATAATTGAAGTTATAATTATGTCTTATGTTCTTGTTAGATA  350

seq1  CTAAACATAAATGTGTTTTTAAAATGTTTTTCCTAATTAATATTGAGAGA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAAACATAAATGTGTTTTTAAAATGTTTTTCCTAATTAATATTGAGAGA  400

seq1  AATGGAAAGGGAGAGAAAAAGCACCCACATGCTATGGCTCATGCATAGAG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGGAAAGGGAGAGAAAAAGCACCCACATGCTATGGCTCATGCATAGAG  450

seq1  GTCAGAACACAGACAGCAGGAGCTAAGGTTGTAGTTATCTGTGAGCTGCC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCAGAACACAGACAGCAGGAGCTAAGGTTGTAGTTATCTGTGAGCTGCC  500

seq1  CAATGTGAGTGCTGGGAACCAAACTCAGATGCTCAGCTAGAGCAGCAAGC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAATGTGAGTGCTGGGAACCAAACTCAGATGCTCAGCTAGAGCAGCAAGC  550

seq1  ACTCTAAAATTTTTTTTATTAGAAATTTTCTTCATTTGCATTTCAAATGC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTCTAAAATTTTTTTTATTAGAAATTTTCTTCATTTGCATTTCAAATGC  600

seq1  TATCCTAAAAGTCCATTATACCCTCCCCCTAGCCCTGCTCCCCTGCTCAC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATCCTAAAAGTCCATTATACCCTCCCCCTAGCCCTGCTCCCCTGCTCAC  650

seq1  CCACTCGCACTTCTTGGCCCTGGCATTCCCCTGTACTAAGGCATATAAAG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCACTCGCACTTCTTGGCCCTGGCATTCCCCTGTACTAAGGCATATAAAG  700

seq1  TTTGCAAGACCAATGGGCCTCTCTTTCCAATGATGGCCAACTAGGCCATC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGCAAGACCAATGGGCCTCTCTTTCCAATGATGGCCAACTAGGCCATC  750

seq1  TTCTGATACATATGCAGCTAGGGACACGAGCTCTGGGGGGTACTGGTTAG  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTGATACATATGCAGCTAGGGACACGAGCTCTGGGGGGTACTGGTTAG  800

seq1  TTCATATTGTTGTTCCACCTATAGGGTTGCAGATCCCTTTAGCTCCTTGG  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCATATTGTTGTTCCACCTATAGGGTTGCAGATCCCTTTAGCTCCTTGG  850

seq1  GTACTTTCTCTAGCTCCTCCATTGGGGGCCCT-GGGCTCCATCCAATAGA  899
      |||||||||||||||||||||||||||||||| |||||||||||||||||
seq2  GTACTTTCTCTAGCTCCTCCATTGGGGGCCCTGGGGCTCCATCCAATAGA  900

seq1  TGACTGTGAGCATCCGCTTCTGTAATTGCCAGGCACTGGCAGAGCCTCAC  949
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGACTGTGAGCATCCGCTTCTGTAATTGCCAGGCACTGGCAGAGCCTCAC  950

seq1  ACAAGAGAGCTATATCAGGGTCCTTTCAGCAAAATCAGCAGCAAGCACTT  999
      || |||||||||||||| ||||||||||||||||||||||||||||||||
seq2  AC-AGAGAGCTATATCATGGTCCTTTCAGCAAAATCAGCAGCAAGCACTT  999

seq1  TTAACCAGTGATCCATC-TCTTTAGCTCTATCTGAAGGCTCTTAACTACT  1048
      ||||||||||||||||| |||||||||||||||||| |||||| ||||||
seq2  TTAACCAGTGATCCATCTTCTTTAGCTCTATCTGAA-GCTCTT-ACTACT  1047

seq1  TAATTTTTTTATTACTATGTGTTCCAAATTTTAGTAATTACACATG-ATG  1097
      | ||||||||| ||||||||||||||||||||||||  |||||||| |||
seq2  T-ATTTTTTTA-TACTATGTGTTCCAAATTTTAGTA--TACACATGAATG  1093

seq1  AGTTTATGACTGTGTGTA-TTATTATG  1123
      ||||  |||||||||||| ||||||||
seq2  AGTTATTGACTGTGTGTATTTATTATG  1120


seq1: chr5_84482868_84483927
seq2: B6Ng01-236N24.g_64_1117 (reverse)

seq1  TAGCCCTGGATGTCAATTAGGTTATGCATAGCATCT-CAAAGGTTAAAGT  49
      ||||| |||||||||  |||  |||||||||||||| |||||| | ||||
seq2  TAGCCATGGATGTCA--TAG--TATGCATAGCATCTCCAAAGGGTTAAGT  46

seq1  GAACATTTCCAATCTAGAATTTCTTCTTCATTAATTACTTGCTACCCTAT  99
      | |||||  |||||||||||||||||| ||||||||||||||||||||||
seq2  G-ACATT--CAATCTAGAATTTCTTCTCCATTAATTACTTGCTACCCTAT  93

seq1  TACTTCTGTTTAGTGAAGAGTGAATATAAGATCAGGAAACTGATTTAAAC  149
      ||||||||||||||||||||||||||| ||||||||||||||||||||||
seq2  TACTTCTGTTTAGTGAAGAGTGAATAT-AGATCAGGAAACTGATTTAAAC  142

seq1  AGGATCTTTAACTCTGTAATACAGTAAGAACAGTGTAAGTCTAAATGACA  199
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGATCTTTAACTCTGTAATACAGTAAGAACAGTGTAAGTCTAAATGACA  192

seq1  CCGAGTTGTGAGTAACATATGAAAATAAACGCTGAGTCAGCAAAGAATCC  249
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCGAGTTGTGAGTAACATATGAAAATAAACGCTGAGTCAGCAAAGAATCC  242

seq1  TAATTCTTCCAAATTTTAAATGTCAGCTTTACTTATTTTTATTCTATAAG  299
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATTCTTCCAAATTTTAAATGTCAGCTTTACTTATTTTTATTCTATAAG  292

seq1  TGCAGTGTGTTGTTTTTCTATGTTGTAATTT-CCCCAAGTACAAACACAA  348
      ||||||||||||||||||||||||||||||| ||||||||||||||||||
seq2  TGCAGTGTGTTGTTTTTCTATGTTGTAATTTCCCCCAAGTACAAACACAA  342

seq1  TTCAATCCCTAGAATAGAGGTCTTTCTTGTCATTTTTCAAAGATCATTAT  398
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCAATCCCTAGAATAGAGGTCTTTCTTGTCATTTTTCAAAGATCATTAT  392

seq1  GATATCATACTTACAAATAATGAGCCTTGCTTCTTATTCCCCTTCTTGTG  448
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATATCATACTTACAAATAATGAGCCTTGCTTCTTATTCCCCTTCTTGTG  442

seq1  TAAATTTTTTATTCTTACGTAGTGACAGAGCAGATAGCAGAGCCTAGTGA  498
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAATTTTTTATTCTTACGTAGTGACAGAGCAGATAGCAGAGCCTAGTGA  492

seq1  TGAGCTTGTCTCCATCTGACATCAGTCGCAAAAATGTGTTCTTTTGTAGG  548
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGCTTGTCTCCATCTGACATCAGTCGCAAAAATGTGTTCTTTTGTAGG  542

seq1  TGATACAAATAGCATATAATTTTTGATTTTTATTTACTTCTTTATGTGGT  598
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGATACAAATAGCATATAATTTTTGATTTTTATTTACTTCTTTATGTGGT  592

seq1  TTCTGTTTTTTTGTTTGTTTGTTTGTTTCTGTTTTGGTGTTTTGTTTTCC  648
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTGTTTTTTTGTTTGTTTGTTTGTTTCTGTTTTGGTGTTTTGTTTTCC  642

seq1  TTAAGTGCATTTTGGATTACATTGTCACCATAAATGAAAGGTAAGGTTCT  698
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAAGTGCATTTTGGATTACATTGTCACCATAAATGAAAGGTAAGGTTCT  692

seq1  GTAATCTCAGTCAGTGTCTTTGTGCCAAATCGCTTGAATGTATATTCAGC  748
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAATCTCAGTCAGTGTCTTTGTGCCAAATCGCTTGAATGTATATTCAGC  742

seq1  AATATGTTTTATGTGGAGAATGTATATGATCATCTTTATAACTCAAAACT  798
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATATGTTTTATGTGGAGAATGTATATGATCATCTTTATAACTCAAAACT  792

seq1  TTATAACTTCATAAAGTAATCACATTTATAACTCAGAAAAGCAAACATTT  848
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATAACTTCATAAAGTAATCACATTTATAACTCAGAAAAGCAAACATTT  842

seq1  TCTGAGAATAAAATTCCTATAAAAAGGCTGTCCATTTAATATATTAGGGG  898
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGAGAATAAAATTCCTATAAAAAGGCTGTCCATTTAATATATTAGGGG  892

seq1  ATACCAAGTAGGACAATCAATTTTTTCTATATTCAAATGTTTTTTATTTT  948
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATACCAAGTAGGACAATCAATTTTTTCTATATTCAAATGTTTTTTATTTT  942

seq1  CTGAAAAAATATAAAATTTAATATCTTACACTACAAAAACATGTACACAA  998
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGAAAAAATATAAAATTTAATATCTTACACTACAAAAACATGTACACAA  992

seq1  ACTGAAAGCACAAACAAATGCAGATGGGAACCAATACAAAACTGGTTATC  1048
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTGAAAGCACAAACAAATGCAGATGGGAACCAATACAAAACTGGTTATC  1042

seq1  CTTCCTGAATTC  1060
      ||||||||||||
seq2  CTTCCTGAATTC  1054


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