BAC Information

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BAC

Clone NameB6Ng01-239A20
Chromosome5 (Build37)
Map Location 54,735,161 - 54,736,287
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC100041198, LOC100041911, Rbpj, Cckar, Tbc1d19, Stim2
Downstream geneEG666377, LOC666380
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-239A20.bB6Ng01-239A20.g
ACCGA049582GA049583
length1,2061,126
definitionB6Ng01-239A20.b B6Ng01-239A20.g
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
gaattctttgtttagctctgtactccatttttaaattgggttaattagtt
ttctacagtctaacttcttgtgttctttgtatattttggatattaggcct
ctatcagatgtaggatagtaaagctcttttcccaatctgtagattgccag
attgccattttgtcctattgacagtgtccattgccttacagaagcttttc
agtttcctggggtcccatttatctttgttgaccttagagcataagctatt
ggtgttctgttcaggaaatgttcccctgtgccaatgtgttcaaggctctt
tcacaatttctcttacattagattcagcttatcttgttttatgtggaagt
ccttgaagcatttggacttgaggtttttacaaggaggtaaaaatagatca
atttacattcttctacaagcagactgccagttagaccagcaccatttgtt
gaaaatgcttttttctactgtatgatttggcttctttgtcaaagatcaag
tgagcatcggtctgagtttatttcagggtcttcagttatattccattaac
ctacctgtctgtctctgtaccaataccacgcagtttttatcactattgct
ctgtagtacagcttgaggttagggatgatgattcccacagaagttctttt
attgctgagaattgtttttgctctccttagttttttgataatccacatga
atttgagaatttctctttctatctctgtgaagaattgagttggaattttg
atggggatttcattgaatctctacattgcttttggtaaaatggccggttt
tactatattaactccacacatccatgagcatgggagatctttccaacttc
tgaggtcttcttcgatttctgtcttcagagacttgaatttcttgtcatac
aaatcttccacttgcttggttagagttacgcccaagaaactttatattat
ttgtgactattatgcaaggtggtgtttctttaatttcttctcaaccaatt
tatcctttggggtaagaaagggctactgatttatttggagttaaatttat
atcggctctttgctgaagttgtttaatctggtttaggagttttctggtag
aacttttggattcactgggtgttataacggtacatatcatatcatctgca
aataagggatatttggactctttccgtttccaaatgtgaattcccccttg
tggatc

gaattccatcatttgtttcttacatggaattggcccatattccttaggct
taatgatgctttgtttttgtcatgtttccagtggggctaaaaataaaata
atatgaaccaatataagtgaaaataaaagtaagataatatgaataaagtg
aaataaaatgaagggaatgcctttaaacttgcttatttatttatttattt
atttatttatttatttatttataagagactgtatgttgtacaatttgcta
tgtagtcaatggtacatttcatagcttcttagaaaatatctgtgggaggc
atccttgtagattgtattttggaaaagccaagtggacaagttcatgattt
ttctttcagaggccaaccttcttgttctgtctttgctgtcctttctcaac
tccctcagtatttttctcttgagaacctgacatatcaatcaacgtatact
ggcctcacacactccacctttcctcagaaagggtaccaagtgagtgtaat
ttaacaagaaagagagtgtggatttttctttcccctcctccactgtttga
tgactttcaaacccacacagtttcttgctaagcctgagaaacaaggacca
tgtgtcatgtctcttctggagcactttcttctgaaggtagcagtcacgat
gtacttgtggtcaactggagaacatatactggattatttaaaataattgc
agaaggctcagaaagcaaaggggaggtggtaggtgtattgttctaagtat
ttccatttatgccttaagattttgggataacagtaacaaagaacacactt
tttggaaaaagttgtgattgatggatctttacttatcctaaaatatattt
gtggatggctttgtctgcaaatttttgttttttttaatgagattttttaa
atcagattttaatgtattcagcaggtgtttattgagtgcctataacatct
tagcaaactgggttacccaactagttaaatagttttacagatgatagaca
gcacacaaacttaccattgctctctgttctgtgtctttggtctcctgcat
ctgcctcttacctgctgcttgatgagcctcttcaagaagaacagtatact
acaccttcctgttctcaagcacaggg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr5_54735161_54736287
seq2: B6Ng01-239A20.g_64_1189

seq1  GAATTCCATCATTTGTTTCTTACATGGAATTGGCCCATATTCCTTAGGCT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCATCATTTGTTTCTTACATGGAATTGGCCCATATTCCTTAGGCT  50

seq1  TAATGATGCTTTGTTTTTGTCATGTTTCCAGTGGGGCTAAAAATAAAATA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATGATGCTTTGTTTTTGTCATGTTTCCAGTGGGGCTAAAAATAAAATA  100

seq1  ATATGAACCAATATAAGTGAAAATAAAAGTAAGATAATATGAATAAAGTG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATGAACCAATATAAGTGAAAATAAAAGTAAGATAATATGAATAAAGTG  150

seq1  AAATAAAATGAAGGGAATGCCTTTAAACTTGCTTATTTATTTATTTATTT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATAAAATGAAGGGAATGCCTTTAAACTTGCTTATTTATTTATTTATTT  200

seq1  ATTTATTTATTTATTTATTTATAAGAGACTGTATGTTGTACAATTTGCTA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTATTTATTTATTTATTTATAAGAGACTGTATGTTGTACAATTTGCTA  250

seq1  TGTAGTCAATGGTACATTTCATAGCTTCTTAGAAAATATCTGTGGGAGGC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTAGTCAATGGTACATTTCATAGCTTCTTAGAAAATATCTGTGGGAGGC  300

seq1  ATCCTTGTAGATTGTATTTTGGAAAAGCCAAGTGGACAAGTTCATGATTT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCCTTGTAGATTGTATTTTGGAAAAGCCAAGTGGACAAGTTCATGATTT  350

seq1  TTCTTTCAGAGGCCAACCTTCTTGTTCTGTCTTTGCTGTCCTTTCTCAAC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTTTCAGAGGCCAACCTTCTTGTTCTGTCTTTGCTGTCCTTTCTCAAC  400

seq1  TCCCTCAGTATTTTTCTCTTGAGAACCTGACATATCAATCAACGTATACT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCCTCAGTATTTTTCTCTTGAGAACCTGACATATCAATCAACGTATACT  450

seq1  GGCCTCACACACTCCACCTTTCCTCAGAAAGGGTACCAAGTGAGTGTAAT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCCTCACACACTCCACCTTTCCTCAGAAAGGGTACCAAGTGAGTGTAAT  500

seq1  TTAACAAGAAAGAGAGTGTGGATTTTTCTTTCCCCTCCTCCACTGTTTGA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAACAAGAAAGAGAGTGTGGATTTTTCTTTCCCCTCCTCCACTGTTTGA  550

seq1  TGACTTTCAAACCCACACAGTTTCTTGCTAAGCCTGAGAAACAAGGACCA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGACTTTCAAACCCACACAGTTTCTTGCTAAGCCTGAGAAACAAGGACCA  600

seq1  TGTGTCATGTCTCTTCTGGAGCACTTTCTTCTGAAGGTAGCAGTCACGAT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGTCATGTCTCTTCTGGAGCACTTTCTTCTGAAGGTAGCAGTCACGAT  650

seq1  GTACTTGTGGTCAACTGGAGAACATATACTGGATTATTTAAAATAATTGC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTACTTGTGGTCAACTGGAGAACATATACTGGATTATTTAAAATAATTGC  700

seq1  AGAAGGCTCAGAAAGCAAAGGGGAGGTGGTAGGTGTATTGTTCTAAGTAT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAGGCTCAGAAAGCAAAGGGGAGGTGGTAGGTGTATTGTTCTAAGTAT  750

seq1  TTCCATTTATGCCTTAAGATTTTGGGATAACAGTAACAAAGAACACACTT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCATTTATGCCTTAAGATTTTGGGATAACAGTAACAAAGAACACACTT  800

seq1  TTTGGAAAAAGTTGTGATTGATGGATCTTTACTTATCCTAAAATATATTT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGGAAAAAGTTGTGATTGATGGATCTTTACTTATCCTAAAATATATTT  850

seq1  GTGGATGGCTTTGTCTGCAAATTTTTGTTTTTTTTAATGAGATTTTTTAA  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGGATGGCTTTGTCTGCAAATTTTTGTTTTTTTTAATGAGATTTTTTAA  900

seq1  ATCAGATTTTAATGTATTCAGCAGGTGTTTATTGAGTGCCTATAACATCT  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCAGATTTTAATGTATTCAGCAGGTGTTTATTGAGTGCCTATAACATCT  950

seq1  TAGCAAACT-GGTTACCCAACTAGTTAAATAAGTTTTACAGATGATAGAC  999
      ||||||||| |||||||||||||||||||| |||||||||||||||||||
seq2  TAGCAAACTGGGTTACCCAACTAGTTAAAT-AGTTTTACAGATGATAGAC  999

seq1  AAGGCACAACAAACTTACCATTGCTCTCTGTTTCTGTTGTCTTTGGGTCT  1049
      |  |||| |||||||||||||||||||||| ||||| ||||||| |||||
seq2  A--GCAC-ACAAACTTACCATTGCTCTCTG-TTCTG-TGTCTTT-GGTCT  1043

seq1  -CTGCATCTGCCTC-TACCTGCTGCTGGATGAAGCCTCT--CAGAAG-AC  1094
       ||||||||||||| ||||||||||| |||| |||||||   ||||| ||
seq2  CCTGCATCTGCCTCTTACCTGCTGCTTGATG-AGCCTCTTCAAGAAGAAC  1092

seq1  AGTTATACTACAC--TCCTGTCTCCAAGCACAGGG  1127
      || ||||||||||  ||||||   |||||||||||
seq2  AG-TATACTACACCTTCCTGTTCTCAAGCACAGGG  1126


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