BAC Information

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BAC

Clone NameB6Ng01-239E20
Chromosome5 (Build37)
Map Location 17,161,210 - 17,162,350
singlet/doubletsinglet
Overlap geneSema3c
Upstream geneEG668131, LOC626390, LOC668142, LOC100041749, LOC100041832, Speer4f, EG630927
Downstream geneCd36, Gnat3, Gnai1, LOC100041818, LOC668167
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-239E20.bB6Ng01-239E20.g
ACCGA049764GA049765
length1,1291,183
definitionB6Ng01-239E20.b B6Ng01-239E20.g
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
gaattctcgtaccatctgtaactttagaattcctgactgcttaaactttc
cagccatgcttcattatttaacacagacacttttcatgattgatttcacc
aataaatcttgtaccaagtggctccaacctacagaactctcagcaggctg
ctgaaataatgatgctgtgagtgtctggagtagctcccagataccatggg
aactattcttaagattcttgatagaaaaatagtcatgagcctgcaaattc
cagataaataagtcaacaatgatgaatagtacatttgttaattaaaacaa
ttgcaaaccacaatcaaagcaaatattgacaaatgggcagctcaacactt
gtgcaaaatggattcccttaactggacttcagtagaaagagtcaagtaag
gaacctatattgatctctgtgcatgacttactctcactgacactaaatta
ttcttgaatattacataagaaatgcattgagctagtctttgatgaacaaa
tcatgcatatacatacatatatatgtatatgcatttttgcttcaatcatg
acaaataccatgatgagattactataaaaaatacaaatgccctttcacaa
ataatttgataaaaagttctcttttcatttagatttactctcaatttttc
atttgagaaagaacatttgataaccaattgtatatttagcataattctca
ttatgaaagacataatttttgtcaatatggacctatttttgtttttcttc
cccatatctagttgaaaaactttgacctattttaaataagcaagaaaata
gatgcaaattaaggaatgcgatagaaataaaaattattgtgtagaaaatc
taatatacttacacttatgcatctgggtttgagatcatattaagtattag
catcaactttttgtctagaaaagtctgactgagcacatcgcagtagaaac
aagaggagctaaaggattgatgtctatatggagccttgaaaggaagtgct
ccagagaggtattgggataggccagtcatcatcaaaactattccataatg
acaggacatttttaggcgagtgtcaccgacacacgagtactgtttcaagg
gtggtagcatggtagtgagactgcagctc

gaattctctcttgatcttcggttgtgaagagcgtctgcagcatctgctga
caatcaccccaagtaggctgatgaaagaaaataagggactccaccaacac
tgtgaggtgttggggatcctctgagaaaagggggtggttagtttcccagt
tataaagatcagcagaggaaaatgaccagtactgaaggggttgaaggttg
gttgggtccactggagtctgtcaggactctgcactctctggctcagtgta
cccgcagcaggtctgcctactgctgcccagaggggtttggtggtggactt
ttccgtgcctgggctgacacctagcagacttagaactgttgcggaccagg
ggaatccgactgtttaattaaaacagagcatcgtggaggcccatggtggg
tgttgaggctgtggataagtggaaggtagtggagccaatggattgattag
ctggtggctccaattcaggagaagccttcactttcgatttctcctgtgct
cttggttcaccagagcacaaccacaattttgggaagcaaaacccaatttt
tagagtgtaaacaatcaattctctttaaaaatcaacaccaagagcattac
tcgctacaaagtttgtctgcctgttcctgaacacaaacgcaagaaggttc
agcccccaatacttcagatacactgtctaaatcctatcttctataagtct
ggttctaggataagaattacatagagtattacccaatttaggtgtatctt
tagagacctgtttccttgggttgtctcatgctgcatgttgtagttctaaa
ttactccaacccagagttatcagttttaaaccaactttctgttactaatg
gtacaatttttaatcataaccattaacttatgaccaaataaatgttaacc
aagacataataaaacatatttatacctttaaaaactattcagaaacaaaa
atgaaaatggcctgcatacatttgcttatttaagccaaaaaaaattttta
attttttaggctttaatttcaagagaggagcaccttgtcaccttgatgaa
tcagtaatcaggaaggcacagagagcttgtaggaaaaaccaggctatccg
ttctcttaacatagacttggagctctggattcgtaggagcacgcgtttcc
tagttcagcctctcgtagtacgcagggactact
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr5_17161210_17162350
seq2: B6Ng01-239E20.b_38_1166

seq1  GAATTCTCGTACCATCTGTAACTTTAGAATTCCTGACTGCTTAAACTTTC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTCGTACCATCTGTAACTTTAGAATTCCTGACTGCTTAAACTTTC  50

seq1  CAGCCATGCTTCATTATTTAACACAGACACTTTTCATGATTGATTTCACC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGCCATGCTTCATTATTTAACACAGACACTTTTCATGATTGATTTCACC  100

seq1  AATAAATCTTGTACCAAGTGGCTCCAACCTACAGAACTCTCAGCAGGCTG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATAAATCTTGTACCAAGTGGCTCCAACCTACAGAACTCTCAGCAGGCTG  150

seq1  CTGAAATAATGATGCTGTGAGTGTCTGGAGTAGCTCCCAGATACCATGGG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGAAATAATGATGCTGTGAGTGTCTGGAGTAGCTCCCAGATACCATGGG  200

seq1  AACTATTCTTAAGATTCTTGATAGAAAAATAGTCATGAGCCTGCAAATTC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTATTCTTAAGATTCTTGATAGAAAAATAGTCATGAGCCTGCAAATTC  250

seq1  CAGATAAATAAGTCAACAATGATGAATAGTACATTTGTTAATTAAAACAA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGATAAATAAGTCAACAATGATGAATAGTACATTTGTTAATTAAAACAA  300

seq1  TTGCAAACCACAATCAAAGCAAATATTGACAAATGGGCAGCTCAACACTT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGCAAACCACAATCAAAGCAAATATTGACAAATGGGCAGCTCAACACTT  350

seq1  GTGCAAAATGGATTCCCTTAACTGGACTTCAGTAGAAAGAGTCAAGTAAG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGCAAAATGGATTCCCTTAACTGGACTTCAGTAGAAAGAGTCAAGTAAG  400

seq1  GAACCTATATTGATCTCTGTGCATGACTTACTCTCACTGACACTAAATTA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAACCTATATTGATCTCTGTGCATGACTTACTCTCACTGACACTAAATTA  450

seq1  TTCTTGAATATTACATAAGAAATGCATTGAGCTAGTCTTTGATGAACAAA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTTGAATATTACATAAGAAATGCATTGAGCTAGTCTTTGATGAACAAA  500

seq1  TCATGCATATACATACATATATATGTATATGCATTTTTGCTTCAATCATG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATGCATATACATACATATATATGTATATGCATTTTTGCTTCAATCATG  550

seq1  ACAAATACCATGATGAGATTACTATAAAAAATACAAATGCCCTTTCACAA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAAATACCATGATGAGATTACTATAAAAAATACAAATGCCCTTTCACAA  600

seq1  ATAATTTGATAAAAAGTTCTCTTTTCATTTAGATTTACTCTCAATTTTTC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAATTTGATAAAAAGTTCTCTTTTCATTTAGATTTACTCTCAATTTTTC  650

seq1  ATTTGAGAAAGAACATTTGATAACCAATTGTATATTTAGCATAATTCTCA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTGAGAAAGAACATTTGATAACCAATTGTATATTTAGCATAATTCTCA  700

seq1  TTATGAAAGACATAATTTTTGTCAATATGGACCTATTTTTGTTTTTCTTC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATGAAAGACATAATTTTTGTCAATATGGACCTATTTTTGTTTTTCTTC  750

seq1  CCCATATCTAGTTGAAAAACTTTGACCTATTTTAAATAAGCAAGAAAATA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCATATCTAGTTGAAAAACTTTGACCTATTTTAAATAAGCAAGAAAATA  800

seq1  GATGCAAATTAAGGAATGCGATAGAAATAAAAATTATTGTGTAGAAAATC  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATGCAAATTAAGGAATGCGATAGAAATAAAAATTATTGTGTAGAAAATC  850

seq1  TAATATACTTACACTTATGCATCTGGGTTTGAGATCATATTAAGTATTAG  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATATACTTACACTTATGCATCTGGGTTTGAGATCATATTAAGTATTAG  900

seq1  CATCAACTTTTTGTCTAGAAAAGTCTGACTGAGCACATCGCAGTAGAAAC  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATCAACTTTTTGTCTAGAAAAGTCTGACTGAGCACATCGCAGTAGAAAC  950

seq1  AAGAGGAGCTAAAAGGATTGATGTCTATATGGAGCCTTGAAAGGAAGTGC  1000
      |||||||||| |||||||||||||||||||||||||||||||||||||||
seq2  AAGAGGAGCT-AAAGGATTGATGTCTATATGGAGCCTTGAAAGGAAGTGC  999

seq1  TCCAGAGAGGTATTGGGATAGGCCAGTCATCATCAAAACTAATCCATAAT  1050
      ||||||||||||||||||||||||||||||||||||||||| ||||||||
seq2  TCCAGAGAGGTATTGGGATAGGCCAGTCATCATCAAAACTATTCCATAAT  1049

seq1  GACAGGAACAATTTTAAGGCGGAAGTGTCA-CGACAACACGAGGAACTGT  1099
      |||||||   ||||| |||||  ||||||| |||| |||||| | |||||
seq2  GACAGGA--CATTTTTAGGCG--AGTGTCACCGAC-ACACGA-GTACTGT  1093

seq1  TTCAAAGGGTGGTAGCATTGGGAAGGTTGAGAACTGCAGCTC  1141
      ||| ||||||||||||||  || ||  |||| ||||||||||
seq2  TTC-AAGGGTGGTAGCAT--GGTAG--TGAG-ACTGCAGCTC  1129


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