BAC Information

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BAC

Clone NameB6Ng01-239P15
Chromosome5 (Build37)
Map Location 81,766,243 - 81,889,398
singlet/doubletdoublet
Overlap geneLphn3
Upstream geneLOC100039506, LOC100039384
Downstream geneEG433912
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-239P15.bB6Ng01-239P15.g
ACCGA050263GA050264
length6361,115
definitionB6Ng01-239P15.b B6Ng01-239P15.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(81,888,763 - 81,889,398)(81,766,243 - 81,767,361)
sequence
gaattcattatcttcaagtacagtgaacactgatcctgtttttccctaaa
tgtgaaggggcaagcacccacagaaccagctatactacacagaatattaa
catatattccctaaaatcctcctatatcatatagtatgctaacttagttc
atataacactcctacattgtataatgcctctatactatatagtatgttaa
taatatattcagaaaatctggactaaacgataagtgtgtgtatatatata
tatatatatatatatatatatatatatatttttttttttttacctacaca
agtggcatgtccccttttctatgtgttaattaaaaaagatggtaaagaaa
ctactgagagtgagagtgtgagtgagagagtgagtgagtgagtgagcatt
tatttgtatgtgtgtgtgtatatgtatgaatatatgtttgggggtgtgtg
cccttgtgtgcgtgcgcgccagaaatgatctatagagaaatcttgagaga
aaagggtatattttgtatgggcatttatcgtgcgcgcgtattttgttatt
gcctaagtttgatttagaaacaataagccaaatagagacagaataatact
ttgagaataatatattaaacatttaatttgtattgt

gaattcctggggagataagaagatgacagaaattgtgacagaacagagat
aaatgttgccatggcaatgggaaaccttctgttttaccacctcagccttt
tggatataactcctgctgtaagagaataatataatgtggccttcaaagag
ctgtgttacctttcttgttttatatatgacactttaatattatttcagaa
agagcccctattcacatttatgtgtgtcttctggaggtgctcatgagttt
agaggagatttctggtgtaatcgtatgaaaaatgtgctctttgcacgttg
cgcttagaatccccttgtgcacctatcacgatatgtttatgtgggaagaa
gagaaaaatgtctccagagaaataaaagatgttttgtggccctaaacatc
atttgaaggaattttttggatcttttttttcttgacttttttcatttaat
ctaaatagtgaagggttatatcctattgaaaataaagctgttaacaaaca
cagatttcagtagtggaaattttttatttatttcctcaaatggaggaatg
agatgagagtcgtacccaagctgtgtgaatacagggcttaggctgagccc
agagtgtttctttctctgttctaactatgcctgggcctaggtctagaagc
ttgagcttctttatatcctaatctctcaaactgcctgactcagtccagct
tctctcagcttctcactgaattgctctacttggcctcacattaactcctt
gcaacatgttctaatctacttgcttctcagtctctggcttgctctgtctt
catctatgtctagcttgttctctgggcgccccgtctttgtaaaactgcca
cacctttctctccctattcggctcttaagtagttaatcttagtttttaat
aaaatgctacagacagtattttttatttgtttgccattatgtgttcttgt
ttccatttctatgagtggtgggtttcaaactgcttatggtgatgatgctt
ttttttttctgatttaatatttgtgaaaaacaactgagtagtgggtcccg
gtatactagcgtgtactttattcctacatttggacgttagagacagtgaa
tcttcttgaattgtg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr5_81888763_81889398
seq2: B6Ng01-239P15.b_48_683 (reverse)

seq1  ACAATACAAATTAAATGTTTAATATATTATTCTCAAGGTATTATTCTGTC  50
      |||||||||||||||||||||||||||||||||||| |||||||||||||
seq2  ACAATACAAATTAAATGTTTAATATATTATTCTCAAAGTATTATTCTGTC  50

seq1  TCTATTTGGCTTATTGTTTATAAGTGTAAGTTTGGAAATACCAAAATATT  100
      ||||||||||||||||||| ||| |  || || || |||| |||||||  
seq2  TCTATTTGGCTTATTGTTTCTAAATCAAACTTAGGCAATAACAAAATACG  100

seq1  TTTCCAGAGTAAATGACTCTACAAAA-----CCCTTCCTCTTAGGCCAAG  145
          ||   |||||| |  |||||||     || || ||||     ||||
seq2  CGCGCACGATAAATGCCCATACAAAATATACCCTTTTCTCT-----CAAG  145

seq1  ATTGCTCTAGAGAACATTTCTGTAGCTCAGAGAATGAAGGGATGTTTTCA  195
      ||| ||||| ||| ||||||||  || ||   |   |||||       ||
seq2  ATTTCTCTATAGATCATTTCTGGCGCGCACGCACACAAGGG-------CA  188

seq1  ATCACTCTCACGAAATACCGTGAAGATTGACTGCGATTTAAGGACA---A  242
        |||   | | ||| |      | ||| | | | || ||   |||   |
seq2  CACAC---CCCCAAACA-----TATATTCA-TAC-ATATACACACACACA  228

seq1  AAC-AATAA--GCTAGCACA---AGGCA---TCGCA-----GATAACAGA  278
       || |||||  |||  | ||   |  ||   || ||       |  ||  
seq2  TACAAATAAATGCTCACTCACTCACTCACTCTCTCACTCACACTCTCACT  278

seq1  CTCAGTAGTTACGTTACCATCTTTCTTAATTAACACTTGGGAAAGGGGAC  328
      |||||||||| | ||||||||||| ||||||||||| | | |||||||||
seq2  CTCAGTAGTTTCTTTACCATCTTTTTTAATTAACACATAGAAAAGGGGAC  328

seq1  ATGCCACTCGCTTAGGAAAAAAAAAAAAAATATATATATATATATATATA  378
      |||||||| |  |||| |||||||||||||||||||||||||||||||||
seq2  ATGCCACTTGTGTAGGTAAAAAAAAAAAAATATATATATATATATATATA  378

seq1  TATATATATATATATATACACACACTTATCGTTTAGTCCAGATTTTCTGA  428
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATATATATATATATATACACACACTTATCGTTTAGTCCAGATTTTCTGA  428

seq1  ATATATTATTAACATACTATATAGTATAGAGGCATTATACAATGTAGGAG  478
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATATTATTAACATACTATATAGTATAGAGGCATTATACAATGTAGGAG  478

seq1  TGTTATATGAACTAAGTTAGCATACTATATGATATAGGAGGATTTTAGGG  528
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTATATGAACTAAGTTAGCATACTATATGATATAGGAGGATTTTAGGG  528

seq1  AATATATGTTAATATTCTGTGTAGTATAGCTGGTTCTGTGGGTGCTTGCC  578
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATATATGTTAATATTCTGTGTAGTATAGCTGGTTCTGTGGGTGCTTGCC  578

seq1  CCTTCACATTTAGGGAAAAACAGGATCAGTGTTCACTGTACTTGAAGATA  628
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTCACATTTAGGGAAAAACAGGATCAGTGTTCACTGTACTTGAAGATA  628

seq1  ATGAATTC  636
      ||||||||
seq2  ATGAATTC  636


seq1: chr5_81766243_81767361
seq2: B6Ng01-239P15.g_63_1177

seq1  GAATTCCTGGGGAGATAAGAAGATGACAGAAATTGTGACAGAACAGAGAT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCTGGGGAGATAAGAAGATGACAGAAATTGTGACAGAACAGAGAT  50

seq1  AAATGTTGCCATGGCAATGGGAAACCTTCTGTTTTACCACCTCAGCCTTT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATGTTGCCATGGCAATGGGAAACCTTCTGTTTTACCACCTCAGCCTTT  100

seq1  TGGATATAACTCCTGCTGTAAGAGAATAATATAATGTGGCCTTCAAAGAG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGATATAACTCCTGCTGTAAGAGAATAATATAATGTGGCCTTCAAAGAG  150

seq1  CTGTGTTACCTTTCTTGTTTTATATATGACACTTTAATATTATTTCAGAA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTGTTACCTTTCTTGTTTTATATATGACACTTTAATATTATTTCAGAA  200

seq1  AGAGCCCCTATTCACATTTATGTGTGTCTTCTGGAGGTGCTCATGAGTTT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGCCCCTATTCACATTTATGTGTGTCTTCTGGAGGTGCTCATGAGTTT  250

seq1  AGAGGAGATTTCTGGTGTAATCGTATGAAAAATGTGCTCTTTGCACGTTG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGGAGATTTCTGGTGTAATCGTATGAAAAATGTGCTCTTTGCACGTTG  300

seq1  CGCTTAGAATCCCCTTGTGCACCTATCACGATATGTTTATGTGGGAAGAA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGCTTAGAATCCCCTTGTGCACCTATCACGATATGTTTATGTGGGAAGAA  350

seq1  GAGAAAAATGTCTCCAGAGAAATAAAAGATGTTTTGTGGCCCTAAACATC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGAAAAATGTCTCCAGAGAAATAAAAGATGTTTTGTGGCCCTAAACATC  400

seq1  ATTTGAAGGAATTTTTTGGATCTTTTTTTTCTTGACTTTTTTCATTTAAT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTGAAGGAATTTTTTGGATCTTTTTTTTCTTGACTTTTTTCATTTAAT  450

seq1  CTAAATAGTGAAGGGTTATATCCTATTGAAAATAAAGCTGTTAACAAACA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAAATAGTGAAGGGTTATATCCTATTGAAAATAAAGCTGTTAACAAACA  500

seq1  CAGATTTCAGTAGTGGAAATTTTTTATTTATTTCCTCAAATGGAGGAATG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGATTTCAGTAGTGGAAATTTTTTATTTATTTCCTCAAATGGAGGAATG  550

seq1  AGATGAGAGTCGTACCCAAGCTGTGTGAATACAGGGCTTAGGCTGAGCCC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATGAGAGTCGTACCCAAGCTGTGTGAATACAGGGCTTAGGCTGAGCCC  600

seq1  AGAGTGTTTCTTTCTCTGTTCTAACTATGCCTGGGCCTAGGTCTAGAAGC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGTGTTTCTTTCTCTGTTCTAACTATGCCTGGGCCTAGGTCTAGAAGC  650

seq1  TTGAGCTTCTTTATATCCTAATCTCTCAAACTGCCTGACTCAGTCCAGCT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGAGCTTCTTTATATCCTAATCTCTCAAACTGCCTGACTCAGTCCAGCT  700

seq1  TCTCTCAGCTTCTCACTGAATTGCTCTACTTGGCCTCACATTAACTCCTT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCTCAGCTTCTCACTGAATTGCTCTACTTGGCCTCACATTAACTCCTT  750

seq1  GCAACATGTTCTAATCTACTTGCTTCTCAGTCTCTGGCTTGCTCTGTCTT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAACATGTTCTAATCTACTTGCTTCTCAGTCTCTGGCTTGCTCTGTCTT  800

seq1  CATCTATGTCTAGCTTGTTCTCTGGGCGCCCCGTCTTTGTAAAACTGCCA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATCTATGTCTAGCTTGTTCTCTGGGCGCCCCGTCTTTGTAAAACTGCCA  850

seq1  CACCTTTCTCTCCCTATTCGGCTCTTAAGTAGTTAATCTTAGTTTTTAAT  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACCTTTCTCTCCCTATTCGGCTCTTAAGTAGTTAATCTTAGTTTTTAAT  900

seq1  AAAATGCTACAGACAGTATTTTTTATTTGTTTTGCCATTATGTGTTCTTG  950
      ||||||||||||||||||||||||||||| ||||||||||||||||||||
seq2  AAAATGCTACAGACAGTATTTTTTATTTG-TTTGCCATTATGTGTTCTTG  949

seq1  TTTTCCATTTCTATGAGT-GTGGGTTTCAAACTGCTTATGGTGATGATGC  999
       ||||||||||||||||| |||||||||||||||||||||||||||||||
seq2  -TTTCCATTTCTATGAGTGGTGGGTTTCAAACTGCTTATGGTGATGATGC  998

seq1  TTTTTTTTTTCTGATTTAATATTTGTGATATACAAATTGAGTAGTGGGTC  1049
      |||||||||||||||||||||||||||| | || || |||||||||||||
seq2  TTTTTTTTTTCTGATTTAATATTTGTGAAAAAC-AACTGAGTAGTGGGTC  1047

seq1  CCGGGTATACTAGCGTGTACTTTATTCCTACCATTTGGGACG-TAGAGAC  1098
      || ||||||||||||||||||||||||||| ||||| ||||| |||||||
seq2  CC-GGTATACTAGCGTGTACTTTATTCCTA-CATTT-GGACGTTAGAGAC  1094

seq1  AGGTGAATC-TCTGAAATTGTG  1119
      | ||||||| |||  |||||||
seq2  A-GTGAATCTTCTTGAATTGTG  1115


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