BAC Information

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BAC

Clone NameB6Ng01-240B01
Chromosome5 (Build37)
Map Location 131,945,083 - 132,095,456
singlet/doubletdoublet
Overlap geneAuts2
Upstream geneCaln1, Wbscr17
Downstream gene4930563F08Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-240B01.bB6Ng01-240B01.g
ACCGA050329GA050330
length1,0691,147
definitionB6Ng01-240B01.b B6Ng01-240B01.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(131,945,083 - 131,946,148)(132,094,322 - 132,095,456)
sequence
gaattcagcctttcctgatgctttaaggagcgttacaactgcggtgtgga
gacagcgctgtctaatgaagccataaaacctgtacactcgatcaacagtt
actaaccttccgcggttttgctataaagatacaaattaccccgtaagcac
agaaactagaggagtttcagatcgaaatgatgcagtattcaccccataat
caaaatatcatagtcaaatagtcagagctctgtatagaagctcttgtctc
gggactcaacagggtcagcagcaatctatatcctgggatgagcactttgt
gttcaaagtacacaaagtggaactgcttctcaaagaataagtctatagta
ttccccccccccatttgtttgctttggtgttttttttttgaggggggcca
gggagggagggtctcaggtagcccgaggttggccttgaactctggatcct
cctgcctccatttcccaagtgctgtgctgacaggcatgttctgccatgtc
tagctaagacctttttttaaaaaaaattaactgacctttttaattgtccg
attggaacaaagtctgcatagaaatctgcctatgtgaaaaagggttctgt
atttagtctagaaaaatctactttttcaagaggcgtgattcaaaataaaa
gggatggtttatcgataggaaagaattcaaactgaatcccagaatgcaga
ctgaatcccggcctttcgaatgactaaaatctgtgatttcatattctcct
cagataataacgagtgcccacccactctttttttgatagccatttcagat
ggtttcaaaatgttccaaaatggggcaatgctaatgctttactattggtt
tgctttggtaagacagggtcctacatagcccaggctgtctttgaactcac
tatgtagcaaggactgtctcaatccctgaccctcctgccttcgtttctcc
agctcggggctgagaggctgggccactgcagcccggctcgttgatgatga
tctttttgatttgaagatgatactgcatcgccactcaaagcgacattggc
atacaagccacgccacccc
gaattcaaggctttttatctacaagttcaatgccagcctggactgcatga
aacttcaatggacagcttgcttgcttgcttgctttctttctttcttcttt
tctttttcttttggttttttgagacagggtttctctgggtagccctggct
gtcctggaactcactctgtagaccaggctggccttgaactcagaaatccg
cctgcctctgcctcccgagtgctgggattaaaagcgtgtgccaccacgcc
cgaccttttttttttttttaacttatttaatgtttgatccatgcatgtca
aacagtctctgatggaggtcaaagggcaactttcagggcttggttctctt
cttccatcacattggttctggggaatcaaactcaggtcatcagtctaggt
agcctttaccctgtgagccatctccccagccatgggttcaacaagcccag
cctgttgtcagcaatgctttattttcctccccccaacaccagatgctgtt
cagttgttacaatatccaggcaagcagagggactgtccctctaggattgg
acttcaagtccagtggtaccaccccagggaatgccacagtgcaacaactc
atcccccacaatctgtgttagtgtccccacatggcacaccagccatttga
atagcaggtccccaaaggagccctgaccctttggcaggaggcttcgtctc
acccaacggagcatcccagaacatcgccagacagaaaatagcatgctgcc
ccagatgtccatgacatgatccacagagcctggcctgaccagatctcgac
tctgttcccactacaccgagatgccaagaagattaatctagccgcagaac
ctcaagagactcctgtagcctcgggttctcagactctttcagagctgggc
cctagaagagctgcagctgaggctgaggaggaacacgtttacttcttgat
gcacaggtgggtgactgctcagattccaaacctgggccttttcctttgtc
tcacgtggtggaccccagaaagtagcactgggagttgatttcttatcctg
gagcttggcggccagttactcctggcatcttctggagaacctgaacggct
ggtcctcacctctacggcttctggaatccggtagggaggaggtctgg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr5_131945083_131946148
seq2: B6Ng01-240B01.b_42_1110

seq1  GAATTCAGCCTTTCCTGATGCTTTAAGGAGCGTTACAACTGCGGTGTGGA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAGCCTTTCCTGATGCTTTAAGGAGCGTTACAACTGCGGTGTGGA  50

seq1  GACAGCGCTGTCTAATGAAGCCATAAAACCTGTACACTCGATCAACAGTT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACAGCGCTGTCTAATGAAGCCATAAAACCTGTACACTCGATCAACAGTT  100

seq1  ACTAACCTTCCGCGGTTTTGCTATAAAGATACAAATTACCCCGTAAGCAC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTAACCTTCCGCGGTTTTGCTATAAAGATACAAATTACCCCGTAAGCAC  150

seq1  AGAAACTAGAGGAGTTTCAGATCGAAATGATGCAGTATTCACCCCATAAT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAACTAGAGGAGTTTCAGATCGAAATGATGCAGTATTCACCCCATAAT  200

seq1  CAAAATATCATAGTCAAATAGTCAGAGCTCTGTATAGAAGCTCTTGTCTC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAAATATCATAGTCAAATAGTCAGAGCTCTGTATAGAAGCTCTTGTCTC  250

seq1  GGGACTCAACAGGGTCAGCAGCAATCTATATCCTGGGATGAGCACTTTGT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGACTCAACAGGGTCAGCAGCAATCTATATCCTGGGATGAGCACTTTGT  300

seq1  GTTCAAAGTACACAAAGTGGAACTGCTTCTCAAAGAATAAGTCTATAGTA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTCAAAGTACACAAAGTGGAACTGCTTCTCAAAGAATAAGTCTATAGTA  350

seq1  TTCCCCCCCCCCATTTGTTTGCTTTGGTGTTTTTTTTTTGAGGGGGGCCA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCCCCCCCCCATTTGTTTGCTTTGGTGTTTTTTTTTTGAGGGGGGCCA  400

seq1  GGGAGGGAGGGTCTCAGGTAGCCCGAGGTTGGCCTTGAACTCTGGATCCT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGAGGGAGGGTCTCAGGTAGCCCGAGGTTGGCCTTGAACTCTGGATCCT  450

seq1  CCTGCCTCCATTTCCCAAGTGCTGTGCTGACAGGCATGTTCTGCCATGTC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGCCTCCATTTCCCAAGTGCTGTGCTGACAGGCATGTTCTGCCATGTC  500

seq1  TAGCTAAGACCTTTTTTTAAAAAAAATTAACTGACCTTTTTAATTGTCCG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGCTAAGACCTTTTTTTAAAAAAAATTAACTGACCTTTTTAATTGTCCG  550

seq1  ATTGGAACAAAGTCTGCATAGAAATCTGCCTATGTGAAAAAGGGTTCTGT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTGGAACAAAGTCTGCATAGAAATCTGCCTATGTGAAAAAGGGTTCTGT  600

seq1  ATTTAGTCTAGAAAAATCTACTTTTTCAAGAGGCGTGATTCAAAATAAAA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTAGTCTAGAAAAATCTACTTTTTCAAGAGGCGTGATTCAAAATAAAA  650

seq1  GGGATGGTTTATCGATAGGAAAGAATTCAAACTGAATCCCAGAATGCAGA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGATGGTTTATCGATAGGAAAGAATTCAAACTGAATCCCAGAATGCAGA  700

seq1  CTGAATCCCGGCCTTTCGAATGACTAAAATCTGTGATTTCATATTCTCCT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGAATCCCGGCCTTTCGAATGACTAAAATCTGTGATTTCATATTCTCCT  750

seq1  CAGATAATAACGAGTGCCCACCCACTCTTTTTTTGATAGCCATTTCAGAT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGATAATAACGAGTGCCCACCCACTCTTTTTTTGATAGCCATTTCAGAT  800

seq1  GGTTTCAAAATGTTCCAAAATGGGGCAATGCTAATGCTTTACTATTGGTT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTTTCAAAATGTTCCAAAATGGGGCAATGCTAATGCTTTACTATTGGTT  850

seq1  TGCTTTGGTAAGACAGGGTCCTACATAGCCCAGGCTGTCTTTGAACTCAC  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTTTGGTAAGACAGGGTCCTACATAGCCCAGGCTGTCTTTGAACTCAC  900

seq1  TATGTAGCAAGGACTGTCTCAATCCCTGACCCTCCTGCCTTCGTTTCTCC  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATGTAGCAAGGACTGTCTCAATCCCTGACCCTCCTGCCTTCGTTTCTCC  950

seq1  AGCTCGGGGCTGAGAGGCTGGGCCACTGCAG-CCGGCTCGTTGATGATGA  999
      ||||||||||||||||||||||||||||||| ||||||||||||||||||
seq2  AGCTCGGGGCTGAGAGGCTGGGCCACTGCAGCCCGGCTCGTTGATGATGA  1000

seq1  TC-TTTTGATTTGAAGGATGATACTGCATCGCCACCCAAAGCGACAATGG  1048
      || |||||||||||| ||||||||||||||||||| |||||||||| |||
seq2  TCTTTTTGATTTGAA-GATGATACTGCATCGCCACTCAAAGCGACATTGG  1049

seq1  CATACAAG-CACG-CACCCC  1066
      |||||||| |||| ||||||
seq2  CATACAAGCCACGCCACCCC  1069

seq1: chr5_132094322_132095456
seq2: B6Ng01-240B01.g_65_1211 (reverse)

seq1  CCAGACCTCCT-CCTACCGAAT--CAGAAGCGGTAGAGGTGAGACCCAGC  47
      ||||||||||| ||||||| ||  ||||||| |||||||||||  |||||
seq2  CCAGACCTCCTCCCTACCGGATTCCAGAAGCCGTAGAGGTGAGGACCAGC  50

seq1  CG-TCA-GTTCTCAGGAGGATGCCAGGAGGTACTGGC--GCAAGCT-CAG  92
      || ||| ||||||  || |||||||||||  ||||||   |||||| |||
seq2  CGTTCAGGTTCTCCAGAAGATGCCAGGAGTAACTGGCCGCCAAGCTCCAG  100

seq1  GATAAAGAAATTCAACTCCAAGTGCTACTTTCTGGGGTC--ACACGTGAG  140
      ||| |||||| |||||||| |||||||||||||||||||   ||||||||
seq2  GAT-AAGAAA-TCAACTCCCAGTGCTACTTTCTGGGGTCCACCACGTGAG  148

seq1  AACAAAGGAAAAGG-CCAGG-TTGGAATCTGAGCAAGTCACC--ACTGTG  186
       ||||||||||||| ||||| ||||||||||||| |||||||   |||||
seq2  -ACAAAGGAAAAGGCCCAGGTTTGGAATCTGAGC-AGTCACCCACCTGTG  196

seq1  CATCAAGAAGTAAACGTGTTCCTCCTCAGCCTCAGCTGCAGCTCTTCTAG  236
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATCAAGAAGTAAACGTGTTCCTCCTCAGCCTCAGCTGCAGCTCTTCTAG  246

seq1  GG-CCAGCTCTGAAAGAGTCTGAGAA-CCGAGGCTACAGGAGTCTCTTGA  284
      || ||||||||||||||||||||||| |||||||||||||||||||||||
seq2  GGCCCAGCTCTGAAAGAGTCTGAGAACCCGAGGCTACAGGAGTCTCTTGA  296

seq1  GGTTCTGCGGCTAGATTAATCTTCTTGGCATCTCGGTGTAGTGGGAACAG  334
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTTCTGCGGCTAGATTAATCTTCTTGGCATCTCGGTGTAGTGGGAACAG  346

seq1  AGTCGAGATCTGGTCAGGCCAGGCTCTGTGGATCATGTCATGGACATCTG  384
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTCGAGATCTGGTCAGGCCAGGCTCTGTGGATCATGTCATGGACATCTG  396

seq1  GGGCAGCATGCTATTTTCTGTCTGGCGATGTTCTGGGATGCTCCGTTGGG  434
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGCAGCATGCTATTTTCTGTCTGGCGATGTTCTGGGATGCTCCGTTGGG  446

seq1  TGAGACGAAGCCTCCTGCCAAAGGGTCAGGGCTCCTTTGGGGACCTGCTA  484
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGACGAAGCCTCCTGCCAAAGGGTCAGGGCTCCTTTGGGGACCTGCTA  496

seq1  TTCAAATGGCTGGTGTGCCATGTGGGGACACTAACACAGATTGTGGGGGA  534
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCAAATGGCTGGTGTGCCATGTGGGGACACTAACACAGATTGTGGGGGA  546

seq1  TGAGTTGTTGCACTGTGGCATTCCCTGGGGTGGTACCACTGGACTTGAAG  584
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGTTGTTGCACTGTGGCATTCCCTGGGGTGGTACCACTGGACTTGAAG  596

seq1  TCCAATCCTAGAGGGACAGTCCCTCTGCTTGCCTGGATATTGTAACAACT  634
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCAATCCTAGAGGGACAGTCCCTCTGCTTGCCTGGATATTGTAACAACT  646

seq1  GAACAGCATCTGGTGTTGGGGGGAGGAAAATAAAGCATTGCTGACAACAG  684
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAACAGCATCTGGTGTTGGGGGGAGGAAAATAAAGCATTGCTGACAACAG  696

seq1  GCTGGGCTTGTTGAACCCATGGCTGGGGAGATGGCTCACAGGGTAAAGGC  734
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTGGGCTTGTTGAACCCATGGCTGGGGAGATGGCTCACAGGGTAAAGGC  746

seq1  TACCTAGACTGATGACCTGAGTTTGATTCCCCAGAACCAATGTGATGGAA  784
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACCTAGACTGATGACCTGAGTTTGATTCCCCAGAACCAATGTGATGGAA  796

seq1  GAAGAGAACCAAGCCCTGAAAGTTGCCCTTTGACCTCCATCAGAGACTGT  834
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGAGAACCAAGCCCTGAAAGTTGCCCTTTGACCTCCATCAGAGACTGT  846

seq1  TTGACATGCATGGATCAAACATTAAATAAGTTAAAAAAAAAAAAAAGGTC  884
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGACATGCATGGATCAAACATTAAATAAGTTAAAAAAAAAAAAAAGGTC  896

seq1  GGGCGTGGTGGCACACGCTTTTAATCCCAGCACTCGGGAGGCAGAGGCAG  934
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGCGTGGTGGCACACGCTTTTAATCCCAGCACTCGGGAGGCAGAGGCAG  946

seq1  GCGGATTTCTGAGTTCAAGGCCAGCCTGGTCTACAGAGTGAGTTCCAGGA  984
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCGGATTTCTGAGTTCAAGGCCAGCCTGGTCTACAGAGTGAGTTCCAGGA  996

seq1  CAGCCAGGGCTACCCAGAGAAACCCTGTCTCAAAAAACCAAAAGAAAAAG  1034
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGCCAGGGCTACCCAGAGAAACCCTGTCTCAAAAAACCAAAAGAAAAAG  1046

seq1  AAAAGAAGAAAGAAAGAAAGCAAGCAAGCAAGCAAGCTGTCCATTGAAGT  1084
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAGAAGAAAGAAAGAAAGCAAGCAAGCAAGCAAGCTGTCCATTGAAGT  1096

seq1  TTCATGCAGTCCAGGCTGGCATTGAACTTGTAGATAAAAAGCCTTGAATT  1134
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCATGCAGTCCAGGCTGGCATTGAACTTGTAGATAAAAAGCCTTGAATT  1146

seq1  C  1135
      |
seq2  C  1147