BAC Information

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BAC

Clone NameB6Ng01-240K21
Chromosome5 (Build37)
Map Location 69,617,613 - 69,794,614
singlet/doubletdoublet
Overlap geneKctd8
Upstream geneLOC666996
Downstream geneLOC545756, Yipf7, Guf1, Gnpda2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-240K21.bB6Ng01-240K21.g
ACCGA050785GA050786
length1,1191,074
definitionB6Ng01-240K21.b B6Ng01-240K21.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(69,617,613 - 69,618,751)(69,793,533 - 69,794,614)
sequence
gaattccacgggaagacaaacaaattcaactaacctggatcctggggact
cttagagactgagccaccaaccaaaggacatacactggctggacttatgc
ctctttatgttctaaaacctcttttacttctctaataatcaagagtagta
ctgttcccttagatctcttaggtctgtatcagggaaagtttctcaggatt
agactgaggtaataaactcaatttcctgagctgtggtgcacaagagggaa
aggctgcatctgcgccatctttgtaaatcacttgtttgatccatgttgtt
attgttttttaatttgttgaatctgaacttgaaacatttcttgacttttg
tggaaggtacctatttaactctggtatattgcattgcaatttctggaata
aattctgtatcagttcaacacatagttctttctctgttccaaatattata
aatcttatatctactaccattatcatttcttgtttgttttcgttgttatt
gattctgtatgttttgtcatggtgaaatatctaagaactctgacaacttt
ggggatgagcaaactgtattttgggcttagtcaaatggatatggcaaaag
tgttttggttatagaaacaagaacatcattggttactttaaagatatata
caatgtaagaggactcttgaaggaagaggatagagagcggtagtgtaaat
aatgagagagataaagaaatggataaagagactgcaaagcagaaaattcc
cctataagagaactagagtcatgggattaaatctctggactttgtttaat
tatctattttttagacacaagagaatatatctcaatggaaaatggtagaa
gctttatgacaaaaggacatagaaaaggaagcacagatgagagaataatt
tatgaactgcattcctgaaaaagcagagaaggaaagcagatggagaactc
acattaggcttgagcagtagaggagatatgggtgtggaggaatctggaat
agaaagtactagtgcaaaggtttgtatctcattggacttacttccatagg
aaatataaaactgccgatgattttacgtactcgaactaaaagtcaagaaa
ggtgaaaattgtcctggtg
gaattcagggaagaaagaaaaataaacacaactgaagcaaaacagagata
tacactgaagtcccatgagcatcaaatgtgagttattcatgtcagggcaa
attctactgaaaagccaatggagcttctgaaaggcacagtgctgtttctg
agcctcctgtgacacctttctgtgcaagctacatccaccttgggaaggaa
ggccccgtttaccaggaattgatgtgtctttagttttagttgttcagaca
gctttcagcttgggatctgccttggtgctgatttattgctttgaagtttt
catgagtctattttttttttattttttattttttttttttgtctcttgat
ccagtaggattttagcagataattcccatttctcttccatggtgtttgca
atagtagacttttatgaaaggcttgttctcccttttttatggctgggtag
aatatatttcccaactgtgtaattatttttagagtttattgagaagtttg
tgggtctagcttcccctatataacaagaacagtgaattctgtctcgaacc
tcttccccattttcagaattaaattgatttcctgaaccatctaaggtaga
atacatttttcttctcattttgacaattatttcaacattttttcctacag
aaaaagctatgtaaattttaaaagaaagtgtttcttgcatattgttccta
aattcctctaagatttttagtgtcatattatacaggataaatgctctaca
gatgcaccaaaaatgagaaaaaaattgtgagtaccttgaatcattccaat
cctgtagcattatgcatttttctttcactatgtaagatgcaaagatatga
gggaaaaatttagcattttagtgggctgatgttgcacagtgtttataata
ggtagttctagcaagaaagtgatgtagggaatcactggtgattttagtat
ttttttagttaatgctttagggagatatggggggacttatgcactgttgc
ttatacttcttttgtaggagagaatcaatttgcatgtagaatgactatgt
tggaagatatatgggggtggaaga
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr5_69617613_69618751
seq2: B6Ng01-240K21.b_46_1164

seq1  GAATTCCACGGGAAGACAAACAAATTCAACTAACCTGGATCCTGGGGACT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCACGGGAAGACAAACAAATTCAACTAACCTGGATCCTGGGGACT  50

seq1  CTTAGAGACTGAGCCACCAACCAAAGGACATACACTGGCTGGACTTATGC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTAGAGACTGAGCCACCAACCAAAGGACATACACTGGCTGGACTTATGC  100

seq1  CTCTTTATGTTCTAAAACCTCTTTTACTTCTCTAATAATCAAGAGTAGTA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTTTATGTTCTAAAACCTCTTTTACTTCTCTAATAATCAAGAGTAGTA  150

seq1  CTGTTCCCTTAGATCTCTTAGGTCTGTATCAGGGAAAGTTTCTCAGGATT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTTCCCTTAGATCTCTTAGGTCTGTATCAGGGAAAGTTTCTCAGGATT  200

seq1  AGACTGAGGTAATAAACTCAATTTCCTGAGCTGTGGTGCACAAGAGGGAA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGACTGAGGTAATAAACTCAATTTCCTGAGCTGTGGTGCACAAGAGGGAA  250

seq1  AGGCTGCATCTGCGCCATCTTTGTAAATCACTTGTTTGATCCATGTTGTT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGCTGCATCTGCGCCATCTTTGTAAATCACTTGTTTGATCCATGTTGTT  300

seq1  ATTGTTTTTTAATTTGTTGAATCTGAACTTGAAACATTTCTTGACTTTTG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTGTTTTTTAATTTGTTGAATCTGAACTTGAAACATTTCTTGACTTTTG  350

seq1  TGGAAGGTACCTATTTAACTCTGGTATATTGCATTGCAATTTCTGGAATA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGAAGGTACCTATTTAACTCTGGTATATTGCATTGCAATTTCTGGAATA  400

seq1  AATTCTGTATCAGTTCAACACATAGTTCTTTCTCTGTTCCAAATATTATA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTCTGTATCAGTTCAACACATAGTTCTTTCTCTGTTCCAAATATTATA  450

seq1  AATCTTATATCTACTACCATTATCATTTCTTGTTTGTTTTCGTTGTTATT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATCTTATATCTACTACCATTATCATTTCTTGTTTGTTTTCGTTGTTATT  500

seq1  GATTCTGTATGTTTTGTCATGGTGAAATATCTAAGAACTCTGACAACTTT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATTCTGTATGTTTTGTCATGGTGAAATATCTAAGAACTCTGACAACTTT  550

seq1  GGGGATGAGCAAACTGTATTTTGGGCTTAGTCAAATGGATATGGCAAAAG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGGATGAGCAAACTGTATTTTGGGCTTAGTCAAATGGATATGGCAAAAG  600

seq1  TGTTTTGGTTATAGAAACAAGAACATCATTGGTTACTTTAAAGATATATA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTTTGGTTATAGAAACAAGAACATCATTGGTTACTTTAAAGATATATA  650

seq1  CAATGTAAGAGGACTCTTGAAGGAAGAGGATAGAGAGCGGTAGTGTAAAT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAATGTAAGAGGACTCTTGAAGGAAGAGGATAGAGAGCGGTAGTGTAAAT  700

seq1  AATGAGAGAGATAAAGAAATGGATAAAGAGACTGCAAAGCAGAAAATTCC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGAGAGAGATAAAGAAATGGATAAAGAGACTGCAAAGCAGAAAATTCC  750

seq1  CCTATAAGAGAACTAGAGTCATGGGATTAAATCTCTGGACTTTGTTTAAT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTATAAGAGAACTAGAGTCATGGGATTAAATCTCTGGACTTTGTTTAAT  800

seq1  TATCTATTTTTTAGACACAAGAGAATATATCTCAATGGAAAATGGTAGAA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATCTATTTTTTAGACACAAGAGAATATATCTCAATGGAAAATGGTAGAA  850

seq1  GCTTTATGACAAAAGGACATAGAAAAGGAAGCACAGATGAGAGAATAATT  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTTTATGACAAAAGGACATAGAAAAGGAAGCACAGATGAGAGAATAATT  900

seq1  TATGAACTGCATTCCTGAAAAAGCAGAGAAGGGAAAGCAGATGGAGGAAC  950
      |||||||||||||||||||||||||||||| |||||||||||||| ||||
seq2  TATGAACTGCATTCCTGAAAAAGCAGAGAA-GGAAAGCAGATGGA-GAAC  948

seq1  TCACATTAGGCTTGAGGCCAGGTAGGAGGAGATAATGGGTGTGGAGGGAA  1000
      ||||||||||||||||  || ||| |||||||| ||||||||||| ||||
seq2  TCACATTAGGCTTGAG--CA-GTA-GAGGAGAT-ATGGGTGTGGA-GGAA  992

seq1  TCTGGAAATAGAAAGTACTAAGTGGCAAAGGTTTGTATCTCATTGGACTT  1050
      ||||| ||||||||||||| ||| ||||||||||||||||||||||||||
seq2  TCTGG-AATAGAAAGTACT-AGT-GCAAAGGTTTGTATCTCATTGGACTT  1039

seq1  ACTTTCCATAAGAAATAT-AAACTGCGGATGTATTTTAGGTACTCGAGAA  1099
      || ||||||| ||||||| ||||||| |||| |||||| |||||||   |
seq2  AC-TTCCATAGGAAATATAAAACTGCCGATG-ATTTTACGTACTCG---A  1084

seq1  ACTAGAAAATTCAGAAAGGGTTGAAAAATATGTCCTGGTG  1139
      |||| ||| |  |||||||  ||||||   ||||||||||
seq2  ACTA-AAAGTCAAGAAAGG--TGAAAA--TTGTCCTGGTG  1119

seq1: chr5_69793533_69794614
seq2: B6Ng01-240K21.g_66_1139 (reverse)

seq1  TCTTCCAACCCCCAT-TATCCTTTTCCAACATAGTCATCTCTAACATGCA  49
      |||||| |||||||| ||||   ||||||||||||||| ||| |||||||
seq2  TCTTCC-ACCCCCATATATC---TTCCAACATAGTCAT-TCT-ACATGCA  44

seq1  ATATGATTCTCTCCTACAAAAAGAGTAT-AGCAACTGTTGGCATAAAGTT  98
      |  ||||||||||||||||||  ||||| |||||| ||  ||||||   |
seq2  AATTGATTCTCTCCTACAAAAGAAGTATAAGCAACAGT--GCATAA--GT  90

seq1  CCCCCCATATCCTCCCTAAAGCATTAACTAAAAAATAACTAAAATCACCA  148
      |||||||||| ||||||||||||||||||||||||  |||||||||||||
seq2  CCCCCCATAT-CTCCCTAAAGCATTAACTAAAAAAATACTAAAATCACCA  139

seq1  GTGATTCCCTACATCACTTTCTTGCTAGAACTACCTATTATAAACACTGT  198
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGATTCCCTACATCACTTTCTTGCTAGAACTACCTATTATAAACACTGT  189

seq1  GCAACATCAGCCCACTAAAATGCTAAATTTTT-CCTCATATCTTTGCATC  247
      |||||||||||||||||||||||||||||||| |||||||||||||||||
seq2  GCAACATCAGCCCACTAAAATGCTAAATTTTTCCCTCATATCTTTGCATC  239

seq1  TTACATAGTGAAAGAAAAATGCATAATGCTACAGGATTGGAATGATTCAA  297
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTACATAGTGAAAGAAAAATGCATAATGCTACAGGATTGGAATGATTCAA  289

seq1  GGTACTCACAATTTTTTTCTCATTTTTGGTGCATCTGTAGAGCATTTATC  347
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTACTCACAATTTTTTTCTCATTTTTGGTGCATCTGTAGAGCATTTATC  339

seq1  CTGTATAATATGACACTAAAAATCTTAGAGGAATTTAGGAACAATATGCA  397
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTATAATATGACACTAAAAATCTTAGAGGAATTTAGGAACAATATGCA  389

seq1  AGAAACACTTTCTTTTAAAATTTACATAGCTTTTTCTGTAGGAAAAAATG  447
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAACACTTTCTTTTAAAATTTACATAGCTTTTTCTGTAGGAAAAAATG  439

seq1  TTGAAATAATTGTCAAAATGAGAAGAAAAATGTATTCTACCTTAGATGGT  497
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGAAATAATTGTCAAAATGAGAAGAAAAATGTATTCTACCTTAGATGGT  489

seq1  TCAGGAAATCAATTTAATTCTGAAAATGGGGAAGAGGTTCGAGACAGAAT  547
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGGAAATCAATTTAATTCTGAAAATGGGGAAGAGGTTCGAGACAGAAT  539

seq1  TCACTGTTCTTGTTATATAGGGGAAGCTAGACCCACAAACTTCTCAATAA  597
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCACTGTTCTTGTTATATAGGGGAAGCTAGACCCACAAACTTCTCAATAA  589

seq1  ACTCTAAAAATAATTACACAGTTGGGAAATATATTCTACCCAGCCATAAA  647
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTCTAAAAATAATTACACAGTTGGGAAATATATTCTACCCAGCCATAAA  639

seq1  AAAGGGAGAACAAGCCTTTCATAAAAGTCTACTATTGCAAACACCATGGA  697
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGGGAGAACAAGCCTTTCATAAAAGTCTACTATTGCAAACACCATGGA  689

seq1  AGAGAAATGGGAATTATCTGCTAAAATCCTACTGGATCAAGAGACAAAAA  747
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGAAATGGGAATTATCTGCTAAAATCCTACTGGATCAAGAGACAAAAA  739

seq1  AAAAAAATAAAAAATAAAAAAAAAATAGACTCATGAAAACTTCAAAGCAA  797
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAAAATAAAAAATAAAAAAAAAATAGACTCATGAAAACTTCAAAGCAA  789

seq1  TAAATCAGCACCAAGGCAGATCCCAAGCTGAAAGCTGTCTGAACAACTAA  847
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAATCAGCACCAAGGCAGATCCCAAGCTGAAAGCTGTCTGAACAACTAA  839

seq1  AACTAAAGACACATCAATTCCTGGTAAACGGGGCCTTCCTTCCCAAGGTG  897
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTAAAGACACATCAATTCCTGGTAAACGGGGCCTTCCTTCCCAAGGTG  889

seq1  GATGTAGCTTGCACAGAAAGGTGTCACAGGAGGCTCAGAAACAGCACTGT  947
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATGTAGCTTGCACAGAAAGGTGTCACAGGAGGCTCAGAAACAGCACTGT  939

seq1  GCCTTTCAGAAGCTCCATTGGCTTTTCAGTAGAATTTGCCCTGACATGAA  997
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCTTTCAGAAGCTCCATTGGCTTTTCAGTAGAATTTGCCCTGACATGAA  989

seq1  TAACTCACATTTGATGCTCATGGGACTTCAGTGTATATCTCTGTTTTGCT  1047
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAACTCACATTTGATGCTCATGGGACTTCAGTGTATATCTCTGTTTTGCT  1039

seq1  TCAGTTGTGTTTATTTTTCTTTCTTCCCTGAATTC  1082
      |||||||||||||||||||||||||||||||||||
seq2  TCAGTTGTGTTTATTTTTCTTTCTTCCCTGAATTC  1074