BAC Information

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BAC

Clone NameB6Ng01-241J05
Chromosome5 (Build37)
Map Location 103,450,379 - 103,451,448
singlet/doubletsinglet
Overlap geneMapk10
Upstream geneWdfy3, EG666515, EG666527, LOC625780, Arhgap24
Downstream geneLOC666563, 4930429D17Rik, LOC100041039, 1700021F02Rik, LOC100041049, Ptpn13, Slc10a6, 1700016H13Rik, Aff1, Klhl8, Hsd17b13, EG666629, Hsd17b11
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-241J05.bB6Ng01-241J05.g
ACCGA051455GA051456
length1,2071,069
definitionB6Ng01-241J05.b B6Ng01-241J05.g
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
gaattctttgtttagctctgagccccattttttaatggggttatttgatt
ttctggagtccaccttcttgagttctttatatgtattggatattagtccc
ctatctgatttaggataggtaaagatcctttcccactctgttggtatcct
ttttgtcttattgacggtgtcttttgccttacagaagctttgcaatttta
tgaggtcccatttgttgattctcgattttacagcacaagccattgctgtt
ctattcaggaatttttcccctgtacccatatcttcgaggcttttgcacac
tttctcctctataagtttcagtctctggttttatgtggagttccttgatc
cacttagatttgaccttagtacaaggagataggaatggatccatttgcat
tcttctacatgataaccgccagttgtgccagcaccatttgttgaaaatgc
tgtcttttttccactggatggttttagctcccctgtcaaagaccaagtga
ccataggtgtgtgggttcatctctgggtcttcaattctgttccattagtc
tacttgtctgtcactataccagtaccatgcagttttgatcacaattgctc
tgtagtacagttttaggtccagcatggtgattccaccagaggttctttta
tccttgagaagagtttttgctctcctaggttttttgttcttccagatgaa
tctgccgattgccctttctaattcgttgaagaattgagttggaattttga
tggggattgcattgaatctgtagattgcttttggcaagatagccatgttt
acaatgttgatcctgccaatccatgagcatgggagatctttccatcttct
gagatcttctttaatttcttcttcagagacttgaagttcttatcatacag
atctttcacttcctttgttagagtcacgcccaaggtatttttatattatt
tgtgactattgagaagggtgtgttcccctaatttcttcagcctgttatct
ttgtgtaaaagaaaaggcattgatttgttgagttaattttatatcagcta
cttcactgaagcctggttattcatgtttagggagttctctggtggtaagt
ttcacgggttccacatatataccaatccaattcaattctgcgcaaaaggg
aacttgaacttccctcattccaagttggtgatccccctggagcattcctc
ctcatgt
gaattctttgctgccaatttagcagtgcagattgagtcctcacagataaa
ggaagcctacaatgtttagtggcaggaaaagcgtatccattatgagagaa
ggaatcctgggtgttaaaaggcacacgtatgaaggacagcaggcgtcagg
gacagaatgacacagaaataaagggagagacaggtgccacattcataaag
gagaagaatgaaagccaagacaaacgagcgcagaaagcaagcagaagact
cccagagagaagcaaagagaaaggggactgggaagagaaatgaggattgt
gacagaatagttttccaggatggaggaaggtactgatgggattaattttg
aaaggaagcaataactccttttgaagaagtgagtttgagtatcgctctta
ccttggctatctttggatcatatttgataagctgttcaaaatgtcttcaa
tattgtcactgtgctgtgaaatagagatagaactttgattggactgtgaa
gtcttcaccacaaagacaaaaagggtttgtttggctagcggttcagttac
tccaagcctctggctgtggatcactgcagcggctgatgggagcaagcttt
tcaccccagggccagctaagaaagggaagtgggaagggaaagggaaatta
gagaaaatgtcaaagaccattgatcacagagtggttcctgtgccagtgac
acccccacatctttgagcttggagcgagatggatctctttggcagaaaag
ctagcgctggctcagcggtgtctacactgtgccagcataacccggaagtg
tacgtgaatcagctctgggtttttacaccacagtgtatgttttcaatgct
gtattactttactttcattctgacgtgtctgccttagagtgatcgattaa
ttaaaagccaccacttggatcatttgtccctgatcccttctccatttttt
aggaaatactataaccatgttttctttgcacatggaaaggattgtttttt
gaactacaaaataaattatgaacctcagtgtttatatagggattctagat
agttgtcagcttggaaacg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr5_103450379_103451448
seq2: B6Ng01-241J05.g_67_1135 (reverse)

seq1  CGTTTCCAAAGCTGACAACTATCTAGAAATTCCTATATAAACACTGAGGT  50
      ||||||| |||||||||||||||||| ||| |||||||||||||||||||
seq2  CGTTTCC-AAGCTGACAACTATCTAG-AATCCCTATATAAACACTGAGGT  48

seq1  TCATAATTTATTTTTGGTAGTTCAAAAAACAATCCTTTCCATGTGC-AAG  99
      ||||||||||||||  |||||||||||||||||||||||||||||| |||
seq2  TCATAATTTATTTT--GTAGTTCAAAAAACAATCCTTTCCATGTGCAAAG  96

seq1  AAAACATGGTTATAGTATTTCCCTAAAAATGGAGAAGGGATCAGGGACAA  149
      ||||||||||||||||||||||  ||||||||||||||||||||||||||
seq2  AAAACATGGTTATAGTATTTCCTAAAAAATGGAGAAGGGATCAGGGACAA  146

seq1  ATGATCCAAGT-GTGGCTTTT-ATTAATCGATCACCTCTAAGGCAGACAC  197
      ||||||||||| ||||||||| |||||||||||| |||||||||||||||
seq2  ATGATCCAAGTGGTGGCTTTTAATTAATCGATCA-CTCTAAGGCAGACAC  195

seq1  GTCAGAATGAAAGTAAAGTAATACAGCATTGAAAACATACACTGTGGTGT  247
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCAGAATGAAAGTAAAGTAATACAGCATTGAAAACATACACTGTGGTGT  245

seq1  AAAAA-CCAGAGCTGATTCACGTACACTTCCGGGTTATGCTGGCACAGTG  296
      ||||| ||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAACCCAGAGCTGATTCACGTACACTTCCGGGTTATGCTGGCACAGTG  295

seq1  TAGACACCGCTGAGCCAGCGCTAGCTTTTCTGCCAAAGAGATCCATCTCG  346
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGACACCGCTGAGCCAGCGCTAGCTTTTCTGCCAAAGAGATCCATCTCG  345

seq1  CTCCAAGCTCAAAGATGTGGGGGTGTCACTGGCACAGGAACCACTCTGTG  396
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCCAAGCTCAAAGATGTGGGGGTGTCACTGGCACAGGAACCACTCTGTG  395

seq1  ATCAATGGTCTTTGACATTTTCTCTAATTTCCCTTTCCCTTCCCACTTCC  446
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCAATGGTCTTTGACATTTTCTCTAATTTCCCTTTCCCTTCCCACTTCC  445

seq1  CTTTCTTAGCTGGCCCTGGGGTGAAAAGCTTGCTCCCATCAGCCGCTGCA  496
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTCTTAGCTGGCCCTGGGGTGAAAAGCTTGCTCCCATCAGCCGCTGCA  495

seq1  GTGATCCACAGCCAGAGGCTTGGAGTAACTGAACCGCTAGCCAAACAAAC  546
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGATCCACAGCCAGAGGCTTGGAGTAACTGAACCGCTAGCCAAACAAAC  545

seq1  CCTTTTTGTCTTTGTGGTGAAGACTTCACAGTCCAATCAAAGTTCTATCT  596
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTTTTGTCTTTGTGGTGAAGACTTCACAGTCCAATCAAAGTTCTATCT  595

seq1  CTATTTCACAGCACAGTGACAATATTGAAGACATTTTGAACAGCTTATCA  646
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTATTTCACAGCACAGTGACAATATTGAAGACATTTTGAACAGCTTATCA  645

seq1  AATATGATCCAAAGATAGCCAAGGTAAGAGCGATACTCAAACTCACTTCT  696
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATATGATCCAAAGATAGCCAAGGTAAGAGCGATACTCAAACTCACTTCT  695

seq1  TCAAAAGGAGTTATTGCTTCCTTTCAAAATTAATCCCATCAGTACCTTCC  746
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAAAAGGAGTTATTGCTTCCTTTCAAAATTAATCCCATCAGTACCTTCC  745

seq1  TCCATCCTGGAAAACTATTCTGTCACAATCCTCATTTCTCTTCCCAGTCC  796
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCATCCTGGAAAACTATTCTGTCACAATCCTCATTTCTCTTCCCAGTCC  795

seq1  CCTTTCTCTTTGCTTCTCTCTGGGAGTCTTCTGCTTGCTTTCTGCGCTCG  846
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTTCTCTTTGCTTCTCTCTGGGAGTCTTCTGCTTGCTTTCTGCGCTCG  845

seq1  TTTGTCTTGGCTTTCATTCTTCTCCTTTATGAATGTGGCACCTGTCTCTC  896
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGTCTTGGCTTTCATTCTTCTCCTTTATGAATGTGGCACCTGTCTCTC  895

seq1  CCTTTATTTCTGTGTCATTCTGTCCCTGACGCCTGCTGTCCTTCATACGT  946
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTTATTTCTGTGTCATTCTGTCCCTGACGCCTGCTGTCCTTCATACGT  945

seq1  GTGCCTTTTAACACCCAGGATTCCTTCTCTCATAATGGATACGCTTTTCC  996
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGCCTTTTAACACCCAGGATTCCTTCTCTCATAATGGATACGCTTTTCC  995

seq1  TGCCACTAAACATTGTAGGCTTCCTTTATCTGTGAGGACTCAATCTGCAC  1046
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCCACTAAACATTGTAGGCTTCCTTTATCTGTGAGGACTCAATCTGCAC  1045

seq1  TGCTAAATTGGCAGCAAAGAATTC  1070
      ||||||||||||||||||||||||
seq2  TGCTAAATTGGCAGCAAAGAATTC  1069