BAC Information

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BAC

Clone NameB6Ng01-242E16
Chromosome5 (Build37)
Map Location 56,316,435 - 56,317,542
singlet/doubletsinglet
Overlap genenone
Upstream geneEG666405
Downstream geneLOC100041335
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-242E16.bB6Ng01-242E16.g
ACCGA051976GA051977
length1,1161,199
definitionB6Ng01-242E16.b B6Ng01-242E16.g
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
gaattcattgtttttaatagctgagtagtactccatttttaaaatccatt
ttctgtatccattcttctattgaggaacatctggttctttccagattctg
ggtattataaataaggctgaacatagtggagaatgtgtcctttttacgtg
ttggagcatcttctgagtatatgctcaggagtggtattgctgtgtcctca
ggtagtactatatccagttttctgaggaaatgtcaaactgattttcagga
atttgataactattcttactgccaacattatttgtgtttttcttctagaa
attaagctgcatccctccaatttcagatgcctgagcaaagatgaaggaag
tgtctaattcaattctataccaaattcagggaaacctatcaattatttct
tcccaactgtcctctctttgctgtagacagtttgtattttgaaaggcagc
attttgtactctatgctttgaggtgttttgcatgaataagagaataattg
tagagacactcaattgagctgtgttaagtatgatctccctattttgtgga
aatggaatcagagttgacaaggcacagggggtcaacccaagtgggaaaat
aaaaggctgttaatctacatcaagagaatattgctgactggcctggtccc
gctgaataaatcatttactgcaaatatacttggctaaaggtaataatgag
aggttatcagggtagggcactataaaattgtttcagtgaaatgagaatag
atagaaactttacaatgggataataccttgacctagtgtcatacacaaca
aaggaaggtttacactgattgagaaatgaaatgctaagtgttctaatgac
tttgaacataggacaagagaagcaggtgacatgttgtaataaatatatta
aacttagtctctcagtcacgtaggttagccaaaacacatcacacacatgc
acacatgtattaggcaaaaacacatcacagaatgcacacataggttagct
taaacccatcacacatatgtgcatgtgcacgcacacacacacaaaataca
cctatatataccctacattcacacacatattgttacaattcacaacacac
accacttcacacaagc

gaattctttgatcaacctggccccaggcattatttagagaacaatagatt
atttatttaatcatggcttctatttcattggttaatacaagtctctttta
tttcatcttaatttaggttttttagagcatatatatttatatattcatca
attcttttagatttattagtttgttagaatataaacataaaatatgtaat
tttgttctctaaaattctgtactgttttttgtattcttaatttgtctcct
ttctctttcttttgatgatggtaactagaggatttttattgttaatctct
taaataacttctcttcatttcattggttccttgtatttttaattccagta
tgaattaattatgtttgaatgtatatatgtatgtattaattccaggcatg
attttgattatctttttctaccaacatttagagtacatttcttccctctg
ttcatggctttcaggagaatcattacattattaatttgagatttctcaat
ttatgtatgcagtcacacaatgctatacatgatcctcttagaactgcctt
cactgtatcccatacacttcaatagtttctggtatcacactgagtcagtt
gtaggaatttgcatttcttctttatgccatggcacaatcattatttagta
gttttctattcagtttccacaatcccactctgtcattccagagtttctat
tattaatgatttacagattaattacattggccttcagaacacatgatgtc
ctttaaatttgttaagtctttgtgtctcaatatgtgactgaccttccatt
ggtttctgttctttataagatatgatggcattctaaaaagagtttgagga
atgatgcatatcttctgcttcaaagaaacttccaagtatttgaattgaat
tgttttcctttataggactgaagtaatcgctaaatattgagtaactctga
tctaaatatttcatgttttctcagtcaaacccttgttgtgtattccaaca
taatctacataatttttattcccaagaaacagaccttaatttttgattag
tgaatccaatctgctgcaattccttgatggcaataggctattaacttatg
tttaaactggcttgttgtagtgaatagccatgatatttaagccaactgtt
caacaaaataaatagttccgtgtctccatcgttaaaaacacatgctgcg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr5_56316435_56317542
seq2: B6Ng01-242E16.b_47_1162

seq1  GAATTCATTGTTTTTAATAGCTGAGTAGTACTCCATTTTTAAAATCCATT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCATTGTTTTTAATAGCTGAGTAGTACTCCATTTTTAAAATCCATT  50

seq1  TTCTGTATCCATTCTTCTATTGAGGAACATCTGGTTCTTTCCAGATTCTG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTGTATCCATTCTTCTATTGAGGAACATCTGGTTCTTTCCAGATTCTG  100

seq1  GGTATTATAAATAAGGCTGAACATAGTGGAGAATGTGTCCTTTTTACGTG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTATTATAAATAAGGCTGAACATAGTGGAGAATGTGTCCTTTTTACGTG  150

seq1  TTGGAGCATCTTCTGAGTATATGCTCAGGAGTGGTATTGCTGTGTCCTCA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGGAGCATCTTCTGAGTATATGCTCAGGAGTGGTATTGCTGTGTCCTCA  200

seq1  GGTAGTACTATATCCAGTTTTCTGAGGAAATGTCAAACTGATTTTCAGGA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTAGTACTATATCCAGTTTTCTGAGGAAATGTCAAACTGATTTTCAGGA  250

seq1  ATTTGATAACTATTCTTACTGCCAACATTATTTGTGTTTTTCTTCTAGAA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTGATAACTATTCTTACTGCCAACATTATTTGTGTTTTTCTTCTAGAA  300

seq1  ATTAAGCTGCATCCCTCCAATTTCAGATGCCTGAGCAAAGATGAAGGAAG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTAAGCTGCATCCCTCCAATTTCAGATGCCTGAGCAAAGATGAAGGAAG  350

seq1  TGTCTAATTCAATTCTATACCAAATTCAGGGAAACCTATCAATTATTTCT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTCTAATTCAATTCTATACCAAATTCAGGGAAACCTATCAATTATTTCT  400

seq1  TCCCAACTGTCCTCTCTTTGCTGTAGACAGTTTGTATTTTGAAAGGCAGC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCCAACTGTCCTCTCTTTGCTGTAGACAGTTTGTATTTTGAAAGGCAGC  450

seq1  ATTTTGTACTCTATGCTTTGAGGTGTTTTGCATGAATAAGAGAATAATTG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTTGTACTCTATGCTTTGAGGTGTTTTGCATGAATAAGAGAATAATTG  500

seq1  TAGAGACACTCAATTGAGCTGTGTTAAGTATGATCTCCCTATTTTGTGGA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGAGACACTCAATTGAGCTGTGTTAAGTATGATCTCCCTATTTTGTGGA  550

seq1  AATGGAATCAGAGTTGACAAGGCACAGGGGGTCAACCCAAGTGGGAAAAT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGGAATCAGAGTTGACAAGGCACAGGGGGTCAACCCAAGTGGGAAAAT  600

seq1  AAAAGGCTGTTAATCTACATCAAGAGAATATTGCTGACTGGCCTGGTCCC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAGGCTGTTAATCTACATCAAGAGAATATTGCTGACTGGCCTGGTCCC  650

seq1  GCTGAATAAATCATTTACTGCAAATATACTTGGCTAAAGGTAATAATGAG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTGAATAAATCATTTACTGCAAATATACTTGGCTAAAGGTAATAATGAG  700

seq1  AGGTTATCAGGGTAGGGCACTATAAAATTGTTTCAGTGAAATGAGAATAG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGTTATCAGGGTAGGGCACTATAAAATTGTTTCAGTGAAATGAGAATAG  750

seq1  ATAGAAACTTTACAATGGGATAATACCTTGACCTAGTGTCATACACAACA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAGAAACTTTACAATGGGATAATACCTTGACCTAGTGTCATACACAACA  800

seq1  AAGGAAGG-TTACACTGATTGAGAAATGAAATGCTAAGTGTTCTAATGAC  849
      |||||||| |||||||||||||||||||||||||||||||||||||||||
seq2  AAGGAAGGTTTACACTGATTGAGAAATGAAATGCTAAGTGTTCTAATGAC  850

seq1  TTTGAACATAGGACAAGAGAAGCAGGTGACATGTTGTAATAAATATATTA  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGAACATAGGACAAGAGAAGCAGGTGACATGTTGTAATAAATATATTA  900

seq1  AACTTAGTCTCTCAGTCACGTAGGTTAGCCAAAACACATCACACACATGC  949
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTTAGTCTCTCAGTCACGTAGGTTAGCCAAAACACATCACACACATGC  950

seq1  ACACATGTATTAGGC-AAAACACATCACAGAAATGCACACATAGGTTAGC  998
      ||||||||||||||| |||||||||||||| |||||||||||||||||||
seq2  ACACATGTATTAGGCAAAAACACATCACAG-AATGCACACATAGGTTAGC  999

seq1  TAAAACCCATCACACATATGTGCATGTGCACGCACACACACAC-AAATAC  1047
      | ||||||||||||||||||||||||||||||||||||||||| ||||||
seq2  TTAAACCCATCACACATATGTGCATGTGCACGCACACACACACAAAATAC  1049

seq1  AACCTATATATA-CCTACA-TCACACACATAT--GTACAATTCACACACA  1093
       ||||||||||| |||||| ||||||||||||   ||||||||||| |||
seq2  -ACCTATATATACCCTACATTCACACACATATTGTTACAATTCACA-ACA  1097

seq1  CACAC----TCACACAAGC  1108
      |||||    ||||||||||
seq2  CACACCACTTCACACAAGC  1116


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