BAC Information

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BAC

Clone NameB6Ng01-243N16
Chromosome5 (Build37)
Map Location 84,660,436 - 84,780,403
singlet/doubletdoublet
Overlap geneEpha5
Upstream geneSrd5a2l2, LOC100039608, LOC231368, LOC100039489
Downstream genenone
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-243N16.bB6Ng01-243N16.g
ACCGA053131GA053132
length1,0361,178
definitionB6Ng01-243N16.b B6Ng01-243N16.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(84,779,368 - 84,780,403)(84,660,436 - 84,661,624)
sequence
gaattcatacgacttcaagtaaagctcttcagtgagattccattttcttc
actgcaaaaccgttcctggagatgccaacctctaacaacatgtgacagga
ttgagtttaaccttctcgttctttccctgctagtttctggtagggggtat
tattgaatgagaaaaaaaagaagaaagaactagaacaaaaggctggcaac
atttcagagttaatatgccaagtgctctttgaccaaattacttctagaaa
aaaaagtgagagaactaactgtcactcaaaagttctttcctcttcttgcg
ttagatcacaaggtaacacctagcaaggcagcaaatgactctgggttaat
ccacagtcatttatccatcgattcttctatatattcttctgttgttttgt
agtgaatgttcaacagcatgcaagagataaaagatttaaaaatgggtttc
tttgtcattcaataacaagaacaaacctaccagaaatagaaaaatgctaa
agtgctgataggaaaaagaaacagatatgaagaaaaatgggtgaacagag
tgataagaattcaatccattcttatgttatctcactaagtggccacaacc
taaggaattagacaaattcatagcactgtactctaaattggtggttctca
atcttgctaatgctgagacacttgaataagtttctcatcttgtggtgacc
cccaaacataaaattattacctctagctccttctctaattctgaataaca
ctaagattttctaaacttctaaaatatttcataaaacgatacacatagca
tttataggtttagggatttatttcactcaaaataatcctctggagaataa
ttgatgattatagcacaatatgttttattgatgagtagtaatttgtctta
aattttgttttacgtttacaggaaaaggtcatccaagctgatattgttct
ttcccattgcaaagaaggtcattataaatgtttgtgcatgcatgtgtgca
tgtgtttgtgtatgtctgtgtgtgtgtgtgtatgtg

gaattcatatccattctttattctctttccagtttggatgagagtttatt
acacataatgtatgcagtccctattctcctgccatgcctccttcccacaa
cctaaacccattgcccttgttctacagcttcctttccttgcttttttcct
tctccttcccatgagttaattttattgaccaagaatatcataacaaaatt
actagaattattttctgttaatctataactatattatatgagtatttttt
aaaattaggattattctaccaactatttgttttttaaaactacattttat
tagcttaagtgagaaaattatcacttatatttaaataaagtttcaaacta
tcatgttttgtattatgttttaagttttgtataaatatccaaactttaat
tgtttattcatgttttatagacaaatttagctaattaggcttcattccta
gcttagtgcaaaattttaatattgaatgaataaacaattttccacctata
cgtttttgccaaatttatgcatggtttcctagcacacacacacacacaca
cacacacacacatatatcattctgaaaatatcagaacatctgttgaggat
agtaaaattttaaaccacaaaaaacaatcacaaagaaataaacattttgg
aaaacaatctttgagtaatttaaattttaagttaaagccgagcgtggtga
cgcatgcctttaatcccagcacttgggaggcagaggcaggcagatttctg
agtttgaggccagcctggtatacagagtgagttccaggacagtcagagct
gtacagagaaatctggtctcaaaaaaccaaaccaaacaaacaaacaaaca
aaaagttaaaatatactaaaaattatttttatttaaaaataaaaatcttc
attaaactggatgcttaaaaacattatcatcaaatctaactccaaacctc
acttcctatgttgtaacttgataaagtttcagccttgtagttgaaccctg
aataagaaaacttctagagtttcttgacattaacattttatatggactga
cctatctgactatatagtgatatgagaaaaaacagtattttaatttgaag
gataatgcagtgatttaaatattgaatcatcaaaagtgacaacaaatcaa
tatccttctctcaccttggccaaatatt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr5_84779368_84780403
seq2: B6Ng01-243N16.b_45_1080 (reverse)

seq1  CACATACACACACACACACAGACATACACAAACACATGCACACATGCATG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACATACACACACACACACAGACATACACAAACACATGCACACATGCATG  50

seq1  CACAAACATTTATAATGACCTTCTTTGCAATGGGAAAGAACAATATCAGC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACAAACATTTATAATGACCTTCTTTGCAATGGGAAAGAACAATATCAGC  100

seq1  TTGGATGACCTTTTCCTGTAAACGTAAAACAAAATTTAAGACAAATTACT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGGATGACCTTTTCCTGTAAACGTAAAACAAAATTTAAGACAAATTACT  150

seq1  ACTCATCAATAAAACATATTGTGCTATAATCATCAATTATTCTCCAGAGG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTCATCAATAAAACATATTGTGCTATAATCATCAATTATTCTCCAGAGG  200

seq1  ATTATTTTGAGTGAAATAAATCCCTAAACCTATAAATGCTATGTGATATC  250
      ||||||||||||||||||||||||||||||||||||||||||||| ||||
seq2  ATTATTTTGAGTGAAATAAATCCCTAAACCTATAAATGCTATGTG-TATC  249

seq1  -TTTTATGAAATATTTTAGAAGTTTAGAAAATCTTAGTGTTATTCAGAAT  299
       |||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTTATGAAATATTTTAGAAGTTTAGAAAATCTTAGTGTTATTCAGAAT  299

seq1  TAGAGAAGGAGCTAGAGGTAATAATTTTATGTTTGGGGGTCACCACAAGA  349
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGAGAAGGAGCTAGAGGTAATAATTTTATGTTTGGGGGTCACCACAAGA  349

seq1  TGAGAAACTTATTCAAGTGTCTCAGCATTAGCAAGATTGAGAACCACCAA  399
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGAAACTTATTCAAGTGTCTCAGCATTAGCAAGATTGAGAACCACCAA  399

seq1  TTTAGAGTACAGTGCTATGAATTTGTCTAATTCCTTAGGTTGTGGCCACT  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTAGAGTACAGTGCTATGAATTTGTCTAATTCCTTAGGTTGTGGCCACT  449

seq1  TAGTGAGATAACATAAGAATGGATTGAATTCTTATCACTCTGTTCACCCA  499
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGTGAGATAACATAAGAATGGATTGAATTCTTATCACTCTGTTCACCCA  499

seq1  TTTTTCTTCATATCTGTTTCTTTTTCCTATCAGCACTTTAGCATTTTTCT  549
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTCTTCATATCTGTTTCTTTTTCCTATCAGCACTTTAGCATTTTTCT  549

seq1  ATTTCTGGTAGGTTTGTTCTTGTTATTGAATGACAAAGAAACCCATTTTT  599
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTCTGGTAGGTTTGTTCTTGTTATTGAATGACAAAGAAACCCATTTTT  599

seq1  AAATCTTTTATCTCTTGCATGCTGTTGAACATTCACTACAAAACAACAGA  649
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATCTTTTATCTCTTGCATGCTGTTGAACATTCACTACAAAACAACAGA  649

seq1  AGAATATATAGAAGAATCGATGGATAAATGACTGTGGATTAACCCAGAGT  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAATATATAGAAGAATCGATGGATAAATGACTGTGGATTAACCCAGAGT  699

seq1  CATTTGCTGCCTTGCTAGGTGTTACCTTGTGATCTAACGCAAGAAGAGGA  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTTGCTGCCTTGCTAGGTGTTACCTTGTGATCTAACGCAAGAAGAGGA  749

seq1  AAGAACTTTTGAGTGACAGTTAGTTCTCTCACTTTTTTTTCTAGAAGTAA  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGAACTTTTGAGTGACAGTTAGTTCTCTCACTTTTTTTTCTAGAAGTAA  799

seq1  TTTGGTCAAAGAGCACTTGGCATATTAACTCTGAAATGTTGCCAGCCTTT  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGGTCAAAGAGCACTTGGCATATTAACTCTGAAATGTTGCCAGCCTTT  849

seq1  TGTTCTAGTTCTTTCTTCTTTTTTTTCTCATTCAATAATACCCCCTACCA  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTCTAGTTCTTTCTTCTTTTTTTTCTCATTCAATAATACCCCCTACCA  899

seq1  GAAACTAGCAGGGAAAGAACGAGAAGGTTAAACTCAATCCTGTCACATGT  949
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAACTAGCAGGGAAAGAACGAGAAGGTTAAACTCAATCCTGTCACATGT  949

seq1  TGTTAGAGGTTGGCATCTCCAGGAACGGTTTTGCAGTGAAGAAAATGGAA  999
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTAGAGGTTGGCATCTCCAGGAACGGTTTTGCAGTGAAGAAAATGGAA  999

seq1  TCTCACTGAAGAGCTTTACTTGAAGTCGTATGAATTC  1036
      |||||||||||||||||||||||||||||||||||||
seq2  TCTCACTGAAGAGCTTTACTTGAAGTCGTATGAATTC  1036


seq1: chr5_84660436_84661624
seq2: B6Ng01-243N16.g_64_1241

seq1  GAATTCATATCCATTCTTTATTCTCTTTCCAGTTTGGATGAGAGTTTATT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCATATCCATTCTTTATTCTCTTTCCAGTTTGGATGAGAGTTTATT  50

seq1  ACACATAATGTATGCAGTCCCTATTCTCCTGCCATGCCTCCTTCCCACAA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACATAATGTATGCAGTCCCTATTCTCCTGCCATGCCTCCTTCCCACAA  100

seq1  CCTAAACCCATTGCCCTTGTTCTACAGCTTCCTTTCCTTGCTTTTTTCCT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTAAACCCATTGCCCTTGTTCTACAGCTTCCTTTCCTTGCTTTTTTCCT  150

seq1  TCTCCTTCCCATGAGTTAATTTTATTGACCAAGAATATCATAACAAAATT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCCTTCCCATGAGTTAATTTTATTGACCAAGAATATCATAACAAAATT  200

seq1  ACTAGAATTATTTTCTGTTAATCTATAACTATATTATATGAGTATTTTTT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTAGAATTATTTTCTGTTAATCTATAACTATATTATATGAGTATTTTTT  250

seq1  AAAATTAGGATTATTCTACCAACTATTTGTTTTTTAAAACTACATTTTAT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAATTAGGATTATTCTACCAACTATTTGTTTTTTAAAACTACATTTTAT  300

seq1  TAGCTTAAGTGAGAAAATTATCACTTATATTTAAATAAAGTTTCAAACTA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGCTTAAGTGAGAAAATTATCACTTATATTTAAATAAAGTTTCAAACTA  350

seq1  TCATGTTTTGTATTATGTTTTAAGTTTTGTATAAATATCCAAACTTTAAT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATGTTTTGTATTATGTTTTAAGTTTTGTATAAATATCCAAACTTTAAT  400

seq1  TGTTTATTCATGTTTTATAGACAAATTTAGCTAATTAGGCTTCATTCCTA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTTATTCATGTTTTATAGACAAATTTAGCTAATTAGGCTTCATTCCTA  450

seq1  GCTTAGTGCAAAATTTTAATATTGAATGAATAAACAATTTTCCACCTATA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTTAGTGCAAAATTTTAATATTGAATGAATAAACAATTTTCCACCTATA  500

seq1  CGTTTTTGCCAAATTTATGCATGGTTTCCTAGCACACACACACACACACA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGTTTTTGCCAAATTTATGCATGGTTTCCTAGCACACACACACACACACA  550

seq1  CACACACACACATATATCATTCTGAAAATATCAGAACATCTGTTGAGGAT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACACACACACATATATCATTCTGAAAATATCAGAACATCTGTTGAGGAT  600

seq1  AGTAAAATTTTAAACCACAAAAAACAATCACAAAGAAATAAACATTTTGG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTAAAATTTTAAACCACAAAAAACAATCACAAAGAAATAAACATTTTGG  650

seq1  AAAACAATCTTTGAGTAATTTAAATTTTAAGTTAAAGCCGAGCGTGGTGA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAACAATCTTTGAGTAATTTAAATTTTAAGTTAAAGCCGAGCGTGGTGA  700

seq1  CGCATGCCTTTAATCCCAGCACTTGGGAGGCAGAGGCAGGCAGATTTCTG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGCATGCCTTTAATCCCAGCACTTGGGAGGCAGAGGCAGGCAGATTTCTG  750

seq1  AGTTTGAGGCCAGCCTGGTATACAGAGTGAGTTCCAGGACAGTCAGAGCT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTTGAGGCCAGCCTGGTATACAGAGTGAGTTCCAGGACAGTCAGAGCT  800

seq1  GTACAGAGAAATCTGGTCTCAAAAAACCAAACCAAACAAACAAACAAACA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTACAGAGAAATCTGGTCTCAAAAAACCAAACCAAACAAACAAACAAACA  850

seq1  AAAAGTTAAAATATACTAAAAATTATTTTTATTTAAAAATAAAAATCTTC  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAGTTAAAATATACTAAAAATTATTTTTATTTAAAAATAAAAATCTTC  900

seq1  ATTAAACTGGATGCTTAAAAACATTATCATCAAATCTAACTCCAAACCTC  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTAAACTGGATGCTTAAAAACATTATCATCAAATCTAACTCCAAACCTC  950

seq1  ACTTCCTATGTTGTAACTTGATAAAGGTTCAGCCTTGTTAGTTGAA-CCT  999
      |||||||||||||||||||||||||| |||||||||| |||||||| |||
seq2  ACTTCCTATGTTGTAACTTGATAAAGTTTCAGCCTTG-TAGTTGAACCCT  999

seq1  GAAT-AGAAAACTTCTTAAGAGTTTCTTGACATTAACATTTTATATGGAC  1048
      |||| |||||||||||  ||||||||||||||||||||||||||||||||
seq2  GAATAAGAAAACTTCT--AGAGTTTCTTGACATTAACATTTTATATGGAC  1047

seq1  TTGAACCCTATCTGACCTATAATAGTGATATTGAG-AAAAACAGTATTTT  1097
       |||  ||||||||| |||| ||||||||| |||| ||||||||||||||
seq2  -TGA--CCTATCTGA-CTAT-ATAGTGATA-TGAGAAAAAACAGTATTTT  1091

seq1  AAATTTGAGGGATAAATTGGCAGTGATTTTAAAATATGACATCCATTCAA  1147
       ||||||| ||||||    ||||||||||  ||||||   || |||   |
seq2  -AATTTGAAGGATAA---TGCAGTGATTT--AAATATTGAAT-CAT--CA  1132

seq1  AAAGTGACAACCAATACAATAT-CTTCTC---ACTTGG-CAAATATT  1189
      ||||||||||| ||| |||||| ||||||    ||||| ||||||||
seq2  AAAGTGACAACAAAT-CAATATCCTTCTCTCACCTTGGCCAAATATT  1178


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