BAC Information

Click to search

BAC

Clone NameB6Ng01-244D21
Chromosome5 (Build37)
Map Location 11,199,242 - 11,200,319
singlet/doubletsinglet
Overlap geneLOC100042819
Upstream geneLOC100041395, LOC381612, EG625586, LOC242809, LOC623849, LOC100041408, LOC667880, EG667888, EG667901, EG667907, LOC667916, LOC100041472, EG545728, LOC667942
Downstream geneLOC667948, EG667949, Speer1-ps1, EG667956, LOC667961, EG667967, LOC100042858, LOC667974, EG667986, EG623898, EG668001, LOC668008, EG668011, LOC668017, EG668021, LOC623998, EG668043, LOC545732, LOC384144
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-244D21.bB6Ng01-244D21.g
ACCGA053426GA053427
length1,2171,081
definitionB6Ng01-244D21.b B6Ng01-244D21.g
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
gaattcatattctttccctcttttatcctctctcagaaacaaaaacaaaa
agacaaaaaaccaaaacaaacatgccagtataaccccaaaatacaaagag
tatgaaatttgtttttgttgttatttgtttgtttgggctacccacttttt
tgcatgacacttgccttgaagacagcctattttcctcttcccaacagtta
ttgattacaaatagtttctttgttgagaatgatattttgtgtacacttat
catctcattactaggatttttgcatattttgaaactctgaagaacttgtg
gagtctttgtgagctcatgtttatcagacctgttaggtttagatagtatt
cttgccttgaagttatccaccaactctggctcattctgttttcagttctt
catagacttttgagccttgagaggaaggtttttgaaagaggctgagtgct
cctaagtccttcactttctgcacattgtcctgttgaaaatatgtgttaat
aaccatctactgcaagaagtttcttccttgagggtttagtgatactctga
tctatgagtatagcaatatgccactaggcatcattttattgctactctct
tttgcaaaatagtagtttttttttctttaaggcccataacctagctagtt
tctgtttgttttattttttatttactaatatacttctttacaatccagcc
attgactccctttcggttccccataatttgtccatcctgttcctccttcc
cctgtctccaagaggatgctccctccaataccaggcacccccttccctgg
agactcaaggccctggaggattagactcattttctactgaggccagacca
ggcagtcctctgctatggatgtgccaaggggcctcggaccagtgcttata
gctacatgggttggtgctgagctctgggagtgccaggggtcctgtcaatt
tatattgctggccatcttagggggtcactctcaattcagcttctttaatc
cttcagcttattcaaccataggcctcactcagtccatggttggatgtaag
tattctgcatctgtctccagtcagctgtgggtagacctctcagaagagta
gccatgctatcccccagtctgtagcacatcacagcatcagcaataggcca
gaccttagtcctcctgccatagaaagaattctcaattggcgctgcatcta
ccgtgcggatgacatca
gaattcaaaaataatctgaaaaccgtaaagcagctttgctatggcttctt
taatgaacagtttccagtaaataaaaatgatctatgagttacacttctta
gatatctaagaatctgattgaagagagggatgcagcagcagagtgccata
aaaaggagactactcaaaagacaaaagaaagaaaacctcagacagccatg
ctaacaccctcatttggatgtgagatgattagaagataaacaatgaaaaa
aaaaaaaaggtcagcagaggtggatctcaattacttagaaaggataaaat
gcaataattataacaacaggctcatcaaaacaaatgtgaacccacaacaa
acaatggcctcctcagatcccttctatgcagtagagggtggaagttaaag
ttagcccacaggaaaaaagcacatagcacaacaaagacttatcacagctt
caaactcaattgttcttcatgaattgtaaaaatgttcagtacagactaaa
caagaatgtgtttaaatttgtatcatcagtttccttgaaaaaagaccttt
atggaagtatatgaaaggactttgtagaaaaatgtatttatgcagtaggc
agaaataagaaggatatctagaaatatctgtattatgtaagtacaggata
tagtcaatacataacaatgtttcagaacctagcattttgtgctatgagtt
ttaagaatgaaaggaaaagtttccaggtaatgtttctttcaaacaaatgc
ctgaggctaaaggatctggactggggataaaccagcagcattcgttgcac
atgtggtatctagggccacagaacttaagagattctgtgactatttacct
agtatgcccaaactcttacttcgagagtaaccacagattagattttcaaa
gaatgcctagtgaagctgattatgaaattgccagaatacagttttgactt
atagaatgtatatgcttctaattaggaaaaataaggactgatatacctct
acaccacccccaccaaatcaatcaaatggagtgtttttcactttctagat
gtagaagatgcactcccctataacctccaga
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr5_11199242_11200319
seq2: B6Ng01-244D21.g_68_1148

seq1  GAATTCAAAAATAATCTGAAAACCGTAAAGCAGCTTTGCTATGGCTTCTT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAAAAATAATCTGAAAACCGTAAAGCAGCTTTGCTATGGCTTCTT  50

seq1  TAATGAACAGTTTCCAGTAAATAAAAATGATCTATGAGTTACACTTCTTA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATGAACAGTTTCCAGTAAATAAAAATGATCTATGAGTTACACTTCTTA  100

seq1  GATATCTAAGAATCTGATTGAAGAGAGGGATGCAGCAGCAGAGTGCCATA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATATCTAAGAATCTGATTGAAGAGAGGGATGCAGCAGCAGAGTGCCATA  150

seq1  AAAAGGAGACTACTCAAAAGACAAAAGAAAGAAAACCTCAGACAGCCATG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAGGAGACTACTCAAAAGACAAAAGAAAGAAAACCTCAGACAGCCATG  200

seq1  CTAACACCCTCATTTGGATGTGAGATGATTAGAAGATAAACAATGAAAAA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAACACCCTCATTTGGATGTGAGATGATTAGAAGATAAACAATGAAAAA  250

seq1  AAAAAAAAGGTCAGCAGAGGTGGATCTCAATTACTTAGAAAGGATAAAAT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAAAAAGGTCAGCAGAGGTGGATCTCAATTACTTAGAAAGGATAAAAT  300

seq1  GCAATAATTATAACAACAGGCTCATCAAAACAAATGTGAACCCACAACAA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAATAATTATAACAACAGGCTCATCAAAACAAATGTGAACCCACAACAA  350

seq1  ACAATGGCCTCCTCAGATCCCTTCTATGCAGTAGAGGGTGGAAGTTAAAG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAATGGCCTCCTCAGATCCCTTCTATGCAGTAGAGGGTGGAAGTTAAAG  400

seq1  TTAGCCCACAGGAAAAAAGCACATAGCACAACAAAGACTTATCACAGCTT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAGCCCACAGGAAAAAAGCACATAGCACAACAAAGACTTATCACAGCTT  450

seq1  CAAACTCAATTGTTCTTCATGAATTGTAAAAATGTTCAGTACAGACTAAA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAACTCAATTGTTCTTCATGAATTGTAAAAATGTTCAGTACAGACTAAA  500

seq1  CAAGAATGTGTTTAAATTTGTATCATCAGTTTCCTTGAAAAAAGACCTTT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAGAATGTGTTTAAATTTGTATCATCAGTTTCCTTGAAAAAAGACCTTT  550

seq1  ATGGAAGTATATGAAAGGACTTTGTAGAAAAATGTATTTATGCAGTAGGC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGGAAGTATATGAAAGGACTTTGTAGAAAAATGTATTTATGCAGTAGGC  600

seq1  AGAAATAAGAAGGATATCTAGAAATATCTGTATTATGTAAGTACAGGATA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAATAAGAAGGATATCTAGAAATATCTGTATTATGTAAGTACAGGATA  650

seq1  TAGTCAATACATAACAATGTTTCAGAACCTAGCATTTTGTGCTATGAGTT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGTCAATACATAACAATGTTTCAGAACCTAGCATTTTGTGCTATGAGTT  700

seq1  TTAAGAATGAAAGGAAAAGTTTCCAGGTAATGTTTCTTTCAAACAAATGC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAAGAATGAAAGGAAAAGTTTCCAGGTAATGTTTCTTTCAAACAAATGC  750

seq1  CTGAGGCT-AAGGATCTGGACTGGGGATAAACCAGCAGCATTCGTTGCAC  799
      |||||||| |||||||||||||||||||||||||||||||||||||||||
seq2  CTGAGGCTAAAGGATCTGGACTGGGGATAAACCAGCAGCATTCGTTGCAC  800

seq1  ATGTGGTATCTAGGGCCACAGAACTTAAGAGATTCTGTGACTATTTACCT  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTGGTATCTAGGGCCACAGAACTTAAGAGATTCTGTGACTATTTACCT  850

seq1  AGTATG-CCAAACTCTTACTTCGAGAGTAACCACAGATTAGATTTTCAAA  898
      |||||| |||||||||||||||||||||||||||||||||||||||||||
seq2  AGTATGCCCAAACTCTTACTTCGAGAGTAACCACAGATTAGATTTTCAAA  900

seq1  GAATGCCTAGTGAAGCTGA-TATG-AATTGCCAGAATACAGTTTTGACTT  946
      ||||||||||||||||||| |||| |||||||||||||||||||||||||
seq2  GAATGCCTAGTGAAGCTGATTATGAAATTGCCAGAATACAGTTTTGACTT  950

seq1  ATAGAATGTATATGCTTCTAATTAGGAAAAATAAGGACTGATATACCTCT  996
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAGAATGTATATGCTTCTAATTAGGAAAAATAAGGACTGATATACCTCT  1000

seq1  ACCACCACCCCACCCAAATCAATCAAAT-GAGTGTTTTTCAC-TTCTAGG  1044
      | |||||||||  ||||||||||||||| ||||||||||||| ||||| |
seq2  A-CACCACCCCCACCAAATCAATCAAATGGAGTGTTTTTCACTTTCTA-G  1048

seq1  ATGTAGAAGATGCACTTCCCCCTAT-ACCTCCAGA  1078
      ||||||||||||||||  ||||||| |||||||||
seq2  ATGTAGAAGATGCACT--CCCCTATAACCTCCAGA  1081