BAC Information

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BAC

Clone NameB6Ng01-244F09
Chromosome5 (Build37)
Map Location 64,794,249 - 64,795,373
singlet/doubletsinglet
Overlap genenone
Upstream gene3110047P20Rik, LOC100042133, 0610040J01Rik, AA536743, LOC100041636, LOC100041646, Pgm1, Tbc1d1, Ppia-ps22
Downstream geneLOC433894, LOC100042198, Klf3, Tlr1, Tlr6, 9130005N14Rik, Tmem156, Klhl5, Wdr19, Rfc1, Klb, Rpl9, Lias
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-244F09.bB6Ng01-244F09.g
ACCGA053496GA053497
length1,1661,119
definitionB6Ng01-244F09.b B6Ng01-244F09.g
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
gaattcagaacttttcagctggggaacgagagtaccagtgagtatgtttg
gccttgaattttttctggtgttaggagcccttttgttctttttcacatgc
tatcaagtgattaagatagggctgaaaattctagaggaaattcaggacaa
gctatcagaagtaaagcgggaagaaagagtaggaacaaagaggaagtatg
gtacacaaaataagtatacaggcctttccaagggtcttgaacccgaggaa
aagttaaggttaggtaggaatacctggagagagattagaagaaaaagagg
aaaaagggagaagaaaaaagatcgattagcggaggtctctaggagatact
cgtcactagatgagctcaggaagccagctcttagtagctctgaagcaagt
gaagaatcctcctctgaggaaacagactgggaggaagaagcagcccatta
ccagccagctaatcggtcaagaaaaaagccaaaagcggctggcgaaggcc
agtttgctaattggcctcagggcaatcggctaccaggtgcactcccgccc
tatgcggagtccccgccctgcgtagtgcgtcagcccgtagtgcgtcagca
atgcgcagagaggcagtgcgcagactcattcattccccgagaggaacaaa
ggaaaatagaacaggcatttccagtctttgaaggagccgagggtgggcgt
gtccacgctccggtagaatacgtacagattaaggaaattgccgagtcggt
tcgtaaatacggaaccaatgctaattttaccttggtgcagttagacaggc
tcgctggcatggcactaactcctgccgactggcaacggttgtaaaagccg
ctctccctagtatgggcaaatatatggaatggaaagcgctttggcacgaa
gctgcacaggcgcaggcccgagcaaacgcagctgcttttgactccagagc
agagagattggacttttgactgttaacggttcaaggagcttattctgctg
atcagacaaactaccattgggggagctatgcccagattttctccacgctt
ttagggctgcagcgcctctcctcgagccaggtgaacacttgttcaggtaa
caaagaatatccaggtacttcaggagtcttctcagaacttttgtgtgtcc
cagaaatgtgatacga
gaattctgtcatttttggtcttctaccccatagatctttgactgagcttt
ctgcaccacccttacaaggacatcctcttgtccagactgatggcctccag
gctactgctagggctcatctagatggagtggaacaagactctgactttcg
ccccctgtgcataaatcaacctattttcggtctaattcaggggaacctgt
aacacggtggggaaggagcacgtgagattagaattagttgagtgtacttg
tgcaagccttaccaagcctcagcttctttctctgcaaacagagaggtgat
ttgcacagatgtcagtgggtaaccgtgaggattacatgggtccccagggg
agaataagtcgacgttgatcttcagagctgttaaagcccaggctctgcac
agctgagatatgattgctgtgttctcatccacagcggcacacccttccac
ccatgtaagagctaagtcctggtgggagccattttgaagacttgagtaga
ttttgtttattctggtagtaggccttccttgctcacaggctgagagaatg
gcctgcgtggggtgctcgtgtgtcttctgctacagagtatgacagagagg
agtgatagtgggggccctctaatacttcataatgtcatgtagcctcaccc
ttttgagggtcaccaggcagacatgtggatagaataacactcctcctgtc
cttcaggtcttgaacatgggggcccatagagagggcaggatgggagcaga
cacagaagttgtggggagcaagggaccttcctgaatccctcagtgctgtg
ctttggctttctctgagtccctctggcttccaggtggcacaatgaagcta
ctgtttgcctagaccttggtactttcttctgtttgctttaatccttatca
ggaccaggtgtttctcttgtttttttgaagttttcaccggcataagttag
tcatttggccataaaaaccctactgtaaataagacatacatttattatta
tcataaaagtcagagcggaataacttcaaagcgatgcattttgaaacgta
ttcagttataagcactttactacggaaggagaactcccgttgccacttgg
attcagagtgactaatttc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr5_64794249_64795373
seq2: B6Ng01-244F09.g_65_1183

seq1  GAATTCTGTCATTTTTGGTCTTCTACCCCATAGATCTTTGACTGAGCTTT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTGTCATTTTTGGTCTTCTACCCCATAGATCTTTGACTGAGCTTT  50

seq1  CTGCACCACCCTTACAAGGACATCCTCTTGTCCAGACTGATGGCCTCCAG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGCACCACCCTTACAAGGACATCCTCTTGTCCAGACTGATGGCCTCCAG  100

seq1  GCTACTGCTAGGGCTCATCTAGATGGAGTGGAACAAGACTCTGACTTTCG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTACTGCTAGGGCTCATCTAGATGGAGTGGAACAAGACTCTGACTTTCG  150

seq1  CCCCCTGTGCATAAATCAACCTATTTTCGGTCTAATTCAGGGGAACCTGT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCCCTGTGCATAAATCAACCTATTTTCGGTCTAATTCAGGGGAACCTGT  200

seq1  AACACGGTGGGGAAGGAGCACGTGAGATTAGAATTAGTTGAGTGTACTTG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACACGGTGGGGAAGGAGCACGTGAGATTAGAATTAGTTGAGTGTACTTG  250

seq1  TGCAAGCCTTACCAAGCCTCAGCTTCTTTCTCTGCAAACAGAGAGGTGAT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCAAGCCTTACCAAGCCTCAGCTTCTTTCTCTGCAAACAGAGAGGTGAT  300

seq1  TTGCACAGATGTCAGTGGGTAACCGTGAGGATTACATGGGTCCCCAGGGG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGCACAGATGTCAGTGGGTAACCGTGAGGATTACATGGGTCCCCAGGGG  350

seq1  AGAATAAGTCGACGTTGATCTTCAGAGCTGTTAAAGCCCAGGCTCTGCAC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAATAAGTCGACGTTGATCTTCAGAGCTGTTAAAGCCCAGGCTCTGCAC  400

seq1  AGCTGAGATATGATTGCTGTGTTCTCATCCACAGCGGCACACCCTTCCAC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCTGAGATATGATTGCTGTGTTCTCATCCACAGCGGCACACCCTTCCAC  450

seq1  CCATGTAAGAGCTAAGTCCTGGTGGGAGCCATTTTGAAGACTTGAGTAGA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCATGTAAGAGCTAAGTCCTGGTGGGAGCCATTTTGAAGACTTGAGTAGA  500

seq1  TTTTGTTTATTCTGGTAGTAGGCCTTCCTTGCTCACAGGCTGAGAGAATG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTGTTTATTCTGGTAGTAGGCCTTCCTTGCTCACAGGCTGAGAGAATG  550

seq1  GCCTGCGTGGGGTGCTCGTGTGTCTTCTGCTACAGAGTATGACAGAGAGG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCTGCGTGGGGTGCTCGTGTGTCTTCTGCTACAGAGTATGACAGAGAGG  600

seq1  AGTGATAGTGGGGGCCCTCTAATACTTCATAATGTCATGTAGCCTCACCC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTGATAGTGGGGGCCCTCTAATACTTCATAATGTCATGTAGCCTCACCC  650

seq1  TTTTGAGGGTCACCAGGCAGACATGTGGATAGAATAACACTCCTCCTGTC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTGAGGGTCACCAGGCAGACATGTGGATAGAATAACACTCCTCCTGTC  700

seq1  CTTCAGGTCTTGAACATGGGGGCCCATAGAGAGGGCAGGATGGGAGCAGA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCAGGTCTTGAACATGGGGGCCCATAGAGAGGGCAGGATGGGAGCAGA  750

seq1  CACAGAAGTTGTGGGGAGCAA-GGACCTTCCTGAATCCCTCAGTGCTGTG  799
      ||||||||||||||||||||| ||||||||||||||||||||||||||||
seq2  CACAGAAGTTGTGGGGAGCAAGGGACCTTCCTGAATCCCTCAGTGCTGTG  800

seq1  CTTTGGCTTTCTCTGAGTCCCTCTGGCTTCCAGGTGGCACAAGGAAGCTA  849
      |||||||||||||||||||||||||||||||||||||||||| |||||||
seq2  CTTTGGCTTTCTCTGAGTCCCTCTGGCTTCCAGGTGGCACAATGAAGCTA  850

seq1  CTGTTTGCCTAGACCTTGGTACTTTCTTCTGTTTGCTTTAATCCTTATCA  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTTTGCCTAGACCTTGGTACTTTCTTCTGTTTGCTTTAATCCTTATCA  900

seq1  GGACCAGGTGTTTCTCTTG-TTTTTTGAAGTTTTCACCGGCATAAGTTAA  948
      ||||||||||||||||||| |||||||||||||||||||||||||||| |
seq2  GGACCAGGTGTTTCTCTTGTTTTTTTGAAGTTTTCACCGGCATAAGTT-A  949

seq1  GTCATTTGGCCCATAAAAACCCTACTGTAAATAAGACATACAATT-TTAT  997
      ||||||||| |||||||||||||||||||||||||||||||| || ||||
seq2  GTCATTTGG-CCATAAAAACCCTACTGTAAATAAGACATACATTTATTAT  998

seq1  ATATCATAAAAGTCAGAGCGAATTACTTTCAAAGCGATGCATTTGAAACC  1047
       ||||||||||||||||||| | ||  |||||||||||||||||  || |
seq2  -TATCATAAAAGTCAGAGCGGAATAACTTCAAAGCGATGCATTTTGAAAC  1047

seq1  GTATCCAAGTAATAAGCACTTACCTACGGGAAGAAAGAAACTCCCTTTGG  1097
      |||| | ||| ||||||||||  |||||| | ||    ||||||| || |
seq2  GTATTC-AGTTATAAGCACTTTACTACGGAAGGA---GAACTCCCGTT-G  1092

seq1  CCAC-TGGATCACAGAGGTGACTAATTTC  1125
      |||| |||||  |||| ||||||||||||
seq2  CCACTTGGAT-TCAGA-GTGACTAATTTC  1119