BAC Information

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BAC

Clone NameB6Ng01-244G11
Chromosome5 (Build37)
Map Location 88,407,119 - 88,559,706
singlet/doubletdoublet
Overlap gene2310003L06Rik, 4931407G18Rik, Smr1, EG665603, Smr2
Upstream geneLOC665424, LOC545767, Ugt2b35, Ugt2b36, LOC665440, Ugt2b5, LOC435848, Ugt2b37, LOC665468, Ugt2a3, LOC665476, LOC665483, LOC665494, LOC100039818, Ugt2b38, Ugt2a2, Ugt2a1, Sult1b1, Sult1d1, Sult1e1, Csn1s1, Csn2, Csn1s2a, Csn1s2b, 4930432K09Rik, EG654494, Odam, BC037156, Csn3, BC051076
Downstream geneLOC100039941, LOC630942, EG665615, Muc10, Amtn, LOC100039963, EG665631, Ambn, Enam, Igj, Crlz1, Rufy3, Grsf1, Mobkl1a, Dck, Mkrn1-ps1, Slc4a4
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-244G11.bB6Ng01-244G11.g
ACCGA053547GA053548
length1,0591,139
definitionB6Ng01-244G11.b B6Ng01-244G11.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(88,558,709 - 88,559,706)(88,407,119 - 88,408,271)
sequence
gaattcatccagcatacagttaccgaacccagacactattgtggatgcca
agaagtgcatgctgaaaggagcctggtatagttgtctccctagaggtcct
gccagagccttacaaatacaggtatggatgcttgcagccaaccattggac
tgagcacagggtccccaatagaggagttagagaaaggaccgaagaaattg
aaggggattacaaccccacaggaagagcaatatcaaccaaccagtccccc
cagagctcccagggacaaagaagtacacatggctccagctgaatgaagta
cacatcctccagcagaggatggacttgtcatgcatcagtgggtggagagg
ttctatgaaggctcatttgatgccccagtatagggcaattgaggccagga
tgtgggattgtttggttgctagatcaaggaataccctcatagaagcaaag
ggagggaagatggtatagggtttctccagtggagggtgtaaaccaggaaa
ggggataatatttgatatgaaaataaagaaaatatccaagaaaaaaagaa
aaaaagagaagattgtatatgctatagtcaccttgcatggcactttaagg
gatgcaagtctttaagggatgtaagtgagtcttttcctcactatgtattg
ttggcaggttctgggaagactatagaacagaccatgtcaactggaggaac
agtatgtgctcttgttcctgtgttgctgattgtaaatcaaactgttccag
accaaatcattgatttatctgttgtgttcttttcctaatttgtcatctgg
cacattgccttcagcaaatccaaagtttaagataaccctataaacttgtc
ctgtgaagatcaatttcatgaacagtggtagaatatgtcatgggcaattt
atggccagacttgttctaagtcactgccttataatcctctcaagtttctt
tagtcagcccttcttctggtttgggagaggtttataatgttctatgtaga
tattacagtttcttttctcctgggttttcctcctcatcctggatcccctt
gtatttacc
gaattcaaggacaacctaggcaatgtaggcagactgtctcaaacgaccaa
caacaaagaaaaaagaagaagaaaaagaagaagaaaaagaaccattttca
acatcagcagtgaaaacctcctgaagaacaaaaagatttcaggagaaact
attcaagctttttaaatgaatgccttaaagtctattcctgtatgtctaca
gagattggtatcatatctctgccatgccaactaaataaaaggaagctgtg
agcactgtgttcatagttgatggaggaataattttgtccttggaatggag
actaccacttcaggtgatgtttccagctcttttcatgttagacatgtatg
agtctgaaatttgcatttcctctgacccatggagcaagagactggctcta
aacactgacactgaattttttcctttacctaatcagctaaatcttaaagc
cagttatacaattattaccccttaatctacaattattgcctgctacaata
acatttgaaaatccttctgaaataaatatcttctagagcagctactgtta
tttcatccctgattctttatgccttgtgaatttaaatacatgacagaaac
ttcttgccacaaaagtcttctgaggttgaaataacaattttcagggtgca
gaaatccataaaaaactaaacctaaaatactggatacagtgtgtcctaag
ttaactgaagacaacaccaaaagccttaccaatccactaagtttattatt
gttgttaatattattattgataatattttcctactttaaaaataatattt
ctctctcagaagagaagaactgcagaagtctctgctacacaattatctta
tttttattcaccatcaaaagggtgtttaaattttagtcatttaagcacca
caaatctcagagaaagaatagctctgcctccaataatacagggtcactta
cttatgaaatagttgattccgaaaagatgttgagagccttcaccatccgg
agtgttgatatgacactaaaccacaagtacctagcagcttgagtatgtct
tgtgtcagggcaccaagcgcaagtcagaaggttacactgtaagcagaaaa
cagggtaatctagctttctaaaataaattcttagatgga
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr5_88558709_88559706
seq2: B6Ng01-244G11.b_96_1100 (reverse)

seq1  GGTAAATAC-AGGGGAT-CAGGATGAGGAAGAAAA-CCAAGAG-AAAGAA  46
      ||||||||| ||||||| ||||||||||| ||||| ||| ||| ||||||
seq2  GGTAAATACAAGGGGATCCAGGATGAGGAGGAAAACCCAGGAGAAAAGAA  50

seq1  ACTGT-ATATCTACATAGAACATTATAAACCTCTCCCAAACCAG-AGAA-  93
      ||||| |||||||||||||||||||||||||||||||||||||| |||| 
seq2  ACTGTAATATCTACATAGAACATTATAAACCTCTCCCAAACCAGAAGAAG  100

seq1  GGCTGACTAAAGAAACTTGAGAGGATTATAAGGCAGTGACTTAGAACAAG  143
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCTGACTAAAGAAACTTGAGAGGATTATAAGGCAGTGACTTAGAACAAG  150

seq1  TCTGGCCATAAATTGCCCATGACATATTCTACCACTGTTCATGAAATTGA  193
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGGCCATAAATTGCCCATGACATATTCTACCACTGTTCATGAAATTGA  200

seq1  TCTTCACAGGACAAGTTTATAGGGTTATCTTAAACTTTGGATTTGCTGAA  243
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTCACAGGACAAGTTTATAGGGTTATCTTAAACTTTGGATTTGCTGAA  250

seq1  GGCAATGTGCCAGATGACAAATTAGGAAAAGAACACAACAGATAAATCAA  293
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCAATGTGCCAGATGACAAATTAGGAAAAGAACACAACAGATAAATCAA  300

seq1  TGATTTGGTCTGGAACAGTTTGATTTACAATCAGCAACACAGGAACAAGA  343
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGATTTGGTCTGGAACAGTTTGATTTACAATCAGCAACACAGGAACAAGA  350

seq1  GCACATACTGTTCCTCCAGTTGACATGGTCTGTTCTATAGTCTTCCCAGA  393
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCACATACTGTTCCTCCAGTTGACATGGTCTGTTCTATAGTCTTCCCAGA  400

seq1  ACCTGCCAACAATACATAGTGAGGAAAAGACTCACTTACATCCCTTAAAG  443
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCTGCCAACAATACATAGTGAGGAAAAGACTCACTTACATCCCTTAAAG  450

seq1  ACTTGCATCCCTTAAAGTGCCATGCAAGGTGACTATAGCATATACAATCT  493
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTGCATCCCTTAAAGTGCCATGCAAGGTGACTATAGCATATACAATCT  500

seq1  TCTCTTTTTTTCTTTTTTTCTTGGATATTTTCTTTATTTTCATATCAAAT  543
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCTTTTTTTCTTTTTTTCTTGGATATTTTCTTTATTTTCATATCAAAT  550

seq1  ATTATCCCCTTTCCTGGTTTACACCCTCCACTGGAGAAACCCTATACCAT  593
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTATCCCCTTTCCTGGTTTACACCCTCCACTGGAGAAACCCTATACCAT  600

seq1  CTTCCCTCCCTTTGCTTCTATGAGGGTATTCCTTGATCTAGCAACCAAAC  643
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCCCTCCCTTTGCTTCTATGAGGGTATTCCTTGATCTAGCAACCAAAC  650

seq1  AATCCCACATCCTGGCCTCAATTGCCCTATACTGGGGCATCAAATGAGCC  693
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATCCCACATCCTGGCCTCAATTGCCCTATACTGGGGCATCAAATGAGCC  700

seq1  TTCATAGAACCTCTCCACCCACTGATGCATGACAAGTCCATCCTCTGCTG  743
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCATAGAACCTCTCCACCCACTGATGCATGACAAGTCCATCCTCTGCTG  750

seq1  GAGGATGTGTACTTCATTCAGCTGGAGCCATGTGTACTTCTTTGTCCCTG  793
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGGATGTGTACTTCATTCAGCTGGAGCCATGTGTACTTCTTTGTCCCTG  800

seq1  GGAGCTCTGGGGGGACTGGTTGGTTGATATTGCTCTTCCTGTGGGGTTGT  843
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAGCTCTGGGGGGACTGGTTGGTTGATATTGCTCTTCCTGTGGGGTTGT  850

seq1  AATCCCCTTCAATTTCTTCGGTCCTTTCTCTAACTCCTCTATTGGGGACC  893
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATCCCCTTCAATTTCTTCGGTCCTTTCTCTAACTCCTCTATTGGGGACC  900

seq1  CTGTGCTCAGTCCAATGGTTGGCTGCAAGCATCCATACCTGTATTTGTAA  943
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTGCTCAGTCCAATGGTTGGCTGCAAGCATCCATACCTGTATTTGTAA  950

seq1  GGCTCTGGCAGGACCTCTAGGGAGACAACTATACCAGGCTCCTTTCAGCA  993
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCTCTGGCAGGACCTCTAGGGAGACAACTATACCAGGCTCCTTTCAGCA  1000

seq1  TGCAC  998
      |||||
seq2  TGCAC  1005

seq1: chr5_88407119_88408271
seq2: B6Ng01-244G11.g_68_1206

seq1  GAATTCAAGGACAACCTAGGCAATGTAGGCAGACTGTCTCAAACGACCAA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAAGGACAACCTAGGCAATGTAGGCAGACTGTCTCAAACGACCAA  50

seq1  CAACAAAGAAAAAAGAAGAAGAAAAAGAAGAAGAAAAAGAACCATTTTCA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAACAAAGAAAAAAGAAGAAGAAAAAGAAGAAGAAAAAGAACCATTTTCA  100

seq1  ACATCAGCAGTGAAAACCTCCTGAAGAACAAAAAGATTTCAGGAGAAACT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATCAGCAGTGAAAACCTCCTGAAGAACAAAAAGATTTCAGGAGAAACT  150

seq1  ATTCAAGCTTTTTAAATGAATGCCTTAAAGTCTATTCCTGTATGTCTACA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTCAAGCTTTTTAAATGAATGCCTTAAAGTCTATTCCTGTATGTCTACA  200

seq1  GAGATTGGTATCATATCTCTGCCATGCCAACTAAATAAAAGGAAGCTGTG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGATTGGTATCATATCTCTGCCATGCCAACTAAATAAAAGGAAGCTGTG  250

seq1  AGCACTGTGTTCATAGTTGATGGAGGAATAATTTTGTCCTTGGAATGGAG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCACTGTGTTCATAGTTGATGGAGGAATAATTTTGTCCTTGGAATGGAG  300

seq1  ACTACCACTTCAGGTGATGTTTCCAGCTCTTTTCATGTTAGACATGTATG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTACCACTTCAGGTGATGTTTCCAGCTCTTTTCATGTTAGACATGTATG  350

seq1  AGTCTGAAATTTGCATTTCCTCTGACCCATGGAGCAAGAGACTGGCTCTA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTCTGAAATTTGCATTTCCTCTGACCCATGGAGCAAGAGACTGGCTCTA  400

seq1  AACACTGACACTGAATTTTTTCCTTTACCTAATCAGCTAAATCTTAAAGC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACACTGACACTGAATTTTTTCCTTTACCTAATCAGCTAAATCTTAAAGC  450

seq1  CAGTTATACAATTATTACCCCTTAATCTACAATTATTGCCTGCTACAATA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGTTATACAATTATTACCCCTTAATCTACAATTATTGCCTGCTACAATA  500

seq1  ACATTTGAAAATCCTTCTGAAATAAATATCTTCTAGAGCAGCTACTGTTA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATTTGAAAATCCTTCTGAAATAAATATCTTCTAGAGCAGCTACTGTTA  550

seq1  TTTCATCCCTGATTCTTTATGCCTTGTGAATTTAAATACATGACAGAAAC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCATCCCTGATTCTTTATGCCTTGTGAATTTAAATACATGACAGAAAC  600

seq1  TTCTTGCCACAAAAGTCTTCTGAGGTTGAAATAACAATTTTCAGGGTGCA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTTGCCACAAAAGTCTTCTGAGGTTGAAATAACAATTTTCAGGGTGCA  650

seq1  GAAATCCATAAAAAACTAAACCTAAAATACTGGATACAGTGTGTCCTAAG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAATCCATAAAAAACTAAACCTAAAATACTGGATACAGTGTGTCCTAAG  700

seq1  TTAACTGAAGACAACACCAAAAGCCTTACCAATCCACTAAGTTTATTATT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAACTGAAGACAACACCAAAAGCCTTACCAATCCACTAAGTTTATTATT  750

seq1  GTTGTTAATATTATTATTGATAATATTTTCCTACTTTAAAAATAATATTT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTGTTAATATTATTATTGATAATATTTTCCTACTTTAAAAATAATATTT  800

seq1  CTCTCTCAGAAGAGAAGAACTGCAGAAGTCTCTGCTACACAATTATCTTA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTCTCAGAAGAGAAGAACTGCAGAAGTCTCTGCTACACAATTATCTTA  850

seq1  TTTTTATTCACCATCAAAAGGGTGTTTAAATTTTAGTCATTTAAGCACCA  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTATTCACCATCAAAAGGGTGTTTAAATTTTAGTCATTTAAGCACCA  900

seq1  CAAATCTCAGAGAAAAGAATAGCTCTGCCTCCAATAATACAGGGTCACTT  950
      |||||||||||| |||||||||||||||||||||||||||||||||||||
seq2  CAAATCTCAGAG-AAAGAATAGCTCTGCCTCCAATAATACAGGGTCACTT  949

seq1  ACTTATGAAATAGTTGATTCCGAAAAGATGTTGAGAGCCTTCAACCATCC  1000
      |||||||||||||||||||||||||||||||||||||||||| |||||||
seq2  ACTTATGAAATAGTTGATTCCGAAAAGATGTTGAGAGCCTTC-ACCATCC  998

seq1  GGAGTGTTGATTATTGACACTAAACCACAAAGTACCTAGCAGGCTTGAGT  1050
      |||||||||||   |||||||||||||| |||||||||||| ||||||||
seq2  GGAGTGTTGAT--ATGACACTAAACCAC-AAGTACCTAGCA-GCTTGAGT  1044

seq1  ATGTC-TGTGTCAAGGGGCACC-AGCGCCAGGTCAGAAGGTGTACACTTG  1098
      ||||| |||||||  ||||||| |||| || |||||||||| ||||| ||
seq2  ATGTCTTGTGTCA--GGGCACCAAGCG-CAAGTCAGAAGGT-TACAC-TG  1089

seq1  TAAGCAG-AAACAGGGTAAATCCTAGGTTTTCTAAAAATAAAATTCTTAG  1147
      ||||||| |||||||||||   ||| | |||||||||   ||||||||||
seq2  TAAGCAGAAAACAGGGTAA--TCTA-GCTTTCTAAAA--TAAATTCTTAG  1134

seq1  TATGGA  1153
       |||||
seq2  -ATGGA  1139