BAC Information

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BAC

Clone NameB6Ng01-244G16
Chromosome5 (Build37)
Map Location 138,077,741 - 138,174,150
singlet/doubletdoublet
Overlap geneLrch4, Sap25, Irs3, Hrbl, LOC624083, 6430598A04Rik
Upstream geneMylc2pl, Emid2, LOC677021, Rabl5, Fis1, Cldn15, Znhit1, Plod3, LOC639992, Vgf, Ap1s1, Serpine1, Trim56, Muc3, LOC100040941, Ache, 2700038N03Rik, Ars2, Trip6, Slc12a9, Ephb4, Zan, EG665591, Epo, Pop7, EG666372, Perq1, Gnb2, Actl6b, Trfr2, Mospd3, EG640050, Pcolce, Fbxo24
Downstream geneTsc22d4, 2010007H12Rik, Bcdin3, Zcwpw1, Pilra, Pilrb1, Pilrb2, LOC100041016, LOC100041027, Cyp3a13, LOC666429, Gje1, Azgp1, EG243302, LOC100041050, Smok3a, Smok3b, Smok3c, Zkscan1, Zscan21, Zfp113, Cops6, Mcm7, Ap4m1, Taf6, 2610019P18Rik, BC038925, Gm454, BC055004, 0910001L09Rik, BC037034, Gal3st4, Gpc2, Stag3, Got2-ps1, 2610020C11Rik, LOC433955, EG666533, 1700123K08Rik, Zfp68, LOC665882, A430033K04Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-244G16.bB6Ng01-244G16.g
ACCGA053557GA053558
length1,13477
definitionB6Ng01-244G16.b B6Ng01-244G16.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(138,077,741 - 138,078,869)(138,174,074 - 138,174,150)
sequence
gaattcccgggtgggggtggcaggagaggaggatgcatagggctgaactc
agctgtgaaggaggagaggagcagccttttgtttctgggaagtgagctga
gccagccagggttggaggtgctatgatggagctaggggtgactgactgcc
cagagccaagttaaaggaagagaattcaaggccttcgcctgggcatctcc
taactctccctgtgccccgactgtagagctgggagaccttcctctggtcc
gcctggatttctcctgtaaccgcatctcccgaatccccgtctccttctgc
cgcctcaggcacctgcaggtcgttctgctggatagcaaccccctacagag
tccacctgcccaggtaaggtgcagcctgggtggaccctgaggacagtggt
gctgtgaggtagcatgggaggatccaacagggcttggggagccacctctt
ctcttgcatgtgcccctcacagatatgcctgaaggggaaacttcacatct
tcaagtacctaacaatggaagctggccggaggggagccgccctcggggac
ctggtcccttcccgccccccaagttttagtccttggtaaggcccagagga
aggaatccccttcttgggaccaaagaactcccctggattccagtgggagg
gtaggggtgccgccagcctggggctgaccgggtcttcctggctgctccag
ccctgccgaagatttatttccgggacgtcgttatgatggtggcctggact
caggcttccacagcgttgacagtggcagcaagaggtggtcaggaaatgag
gtaaggacctcctttgcaagggcatttggggatgtcattgggactggact
gggactctatacctaaccaggttagtatctcggtaagaggtcatgcctcg
ggctccttccccctactatccccaggaggcagccctccacttgatcccag
tcttctactgtgcagcctgaacccatatggtccccagccctgcaagagcc
cattgtcccatcctcttgccctcctctgcctaaagtcccacagatgattt
tccagagcttgtcttcccgatcctcgagcctgctcgtgaatccccggggc
ctagaccacctaggtaagattgcccttggtgagc
atcagagtcagaggcctggagtgggctacattaaaaaaagaaagagagag
agagggagggagggagggagggaggga
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr5_138077741_138078869
seq2: B6Ng01-244G16.b_43_1176

seq1  GAATTCCCGGGTGGGGGTGGCAGGAGAGGAGGATGCATAGGGCTGAACTC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCCGGGTGGGGGTGGCAGGAGAGGAGGATGCATAGGGCTGAACTC  50

seq1  AGCTGTGAAGGAGGAGAGGAGCAGCCTTTTGTTTCTGGGAAGTGAGCTGA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCTGTGAAGGAGGAGAGGAGCAGCCTTTTGTTTCTGGGAAGTGAGCTGA  100

seq1  GCCAGCCAGGGTTGGAGGTGCTATGATGGAGCTAGGGGTGACTGACTGCC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCAGCCAGGGTTGGAGGTGCTATGATGGAGCTAGGGGTGACTGACTGCC  150

seq1  CAGAGCCAAGTTAAAGGAAGAGAATTCAAGGCCTTCGCCTGGGCATCTCC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGAGCCAAGTTAAAGGAAGAGAATTCAAGGCCTTCGCCTGGGCATCTCC  200

seq1  TAACTCTCCCTGTGCCCCGACTGTAGAGCTGGGAGACCTTCCTCTGGTCC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAACTCTCCCTGTGCCCCGACTGTAGAGCTGGGAGACCTTCCTCTGGTCC  250

seq1  GCCTGGATTTCTCCTGTAACCGCATCTCCCGAATCCCCGTCTCCTTCTGC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCTGGATTTCTCCTGTAACCGCATCTCCCGAATCCCCGTCTCCTTCTGC  300

seq1  CGCCTCAGGCACCTGCAGGTCGTTCTGCTGGATAGCAACCCCCTACAGAG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGCCTCAGGCACCTGCAGGTCGTTCTGCTGGATAGCAACCCCCTACAGAG  350

seq1  TCCACCTGCCCAGGTAAGGTGCAGCCTGGGTGGACCCTGAGGACAGTGGT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCACCTGCCCAGGTAAGGTGCAGCCTGGGTGGACCCTGAGGACAGTGGT  400

seq1  GCTGTGAGGTAGCATGGGAGGATCCAACAGGGCTTGGGGAGCCACCTCTT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTGTGAGGTAGCATGGGAGGATCCAACAGGGCTTGGGGAGCCACCTCTT  450

seq1  CTCTTGCATGTGCCCCTCACAGATATGCCTGAAGGGGAAACTTCACATCT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTTGCATGTGCCCCTCACAGATATGCCTGAAGGGGAAACTTCACATCT  500

seq1  TCAAGTACCTAACAATGGAAGCTGGCCGGAGGGGAGCCGCCCTCGGGGAC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAAGTACCTAACAATGGAAGCTGGCCGGAGGGGAGCCGCCCTCGGGGAC  550

seq1  CTGGTCCCTTCCCGCCCCCCAAGTTTTAGTCCTTGGTAAGGCCCAGAGGA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGTCCCTTCCCGCCCCCCAAGTTTTAGTCCTTGGTAAGGCCCAGAGGA  600

seq1  AGGAATCCCCTTCTTGGGACCAAAGAACTCCCCTGGATTCCAGTGGGAGG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGAATCCCCTTCTTGGGACCAAAGAACTCCCCTGGATTCCAGTGGGAGG  650

seq1  GTAGGGGTGCCGCCAGCCTGGGGCTGACCGGGTCTTCCTGGCTGCTCCAG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAGGGGTGCCGCCAGCCTGGGGCTGACCGGGTCTTCCTGGCTGCTCCAG  700

seq1  CCCTGCCGAAGATTTATTTCCGGGACGTCGTTATGATGGTGGCCTGGACT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCTGCCGAAGATTTATTTCCGGGACGTCGTTATGATGGTGGCCTGGACT  750

seq1  CAGGCTTCCACAGCGTTGACAGTGGCAGCAAGAGGTGGTCAGGAAATGAG  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGCTTCCACAGCGTTGACAGTGGCAGCAAGAGGTGGTCAGGAAATGAG  800

seq1  GTAAGGACCTCCTTTGCAAGGGCATTTGGGGATGTCATTGGGACTGGGAC  850
      ||||||||||||||||||||||||||||||||||||||||||||| ||||
seq2  GTAAGGACCTCCTTTGCAAGGGCATTTGGGGATGTCATTGGGACT-GGAC  849

seq1  TGGGGACTCTATACCTAA-CAGGTTAGTATCTCGGTAAGAGGTCATGCCT  899
      | |||||||||||||||| |||||||||||||||||||||||||||||||
seq2  T-GGGACTCTATACCTAACCAGGTTAGTATCTCGGTAAGAGGTCATGCCT  898

seq1  CGGGCTCCTT-CCCCTACTATCCCCAAGAGGCAGGCCCTCCACTTGATCC  948
      |||||||||| ||||||||||||||| |||||| ||||||||||||||||
seq2  CGGGCTCCTTCCCCCTACTATCCCCAGGAGGCA-GCCCTCCACTTGATCC  947

seq1  CAGTC-TCTACTGTGCAGCCTGAACCCATATGGTCCCCAGCCCTGCAGGG  997
      ||||| |||||||||||||||||||||||||||||||||||||||||  |
seq2  CAGTCTTCTACTGTGCAGCCTGAACCCATATGGTCCCCAGCCCTGCA-AG  996

seq1  AGCCCA-TGTCCCAT-CTC-TGCC--TCTCTGCCTTAAAGT-CCACAGAT  1041
      |||||| |||||||| ||| ||||   ||||||| |||||| ||||||||
seq2  AGCCCATTGTCCCATCCTCTTGCCCTCCTCTGCC-TAAAGTCCCACAGAT  1045

seq1  GATTTTTCAGAGC-TGTCTTTCCGGATCTCGGAGCTGGCTCGTGATCCCC  1090
      |||||| |||||| |||| |||| ||||   ||||  ||||||||  |||
seq2  GATTTTCCAGAGCTTGTC-TTCCCGATCCTCGAGCCTGCTCGTGAATCCC  1094

seq1  GGGGGCCTAGACAACCTAGGGAAGATGGCGC-TGGTGAGC  1129
       ||||||||||| ||||||| ||||| || | ||||||||
seq2  CGGGGCCTAGACCACCTAGGTAAGATTGCCCTTGGTGAGC  1134

seq1: chr5_138174074_138174150
seq2: B6Ng01-244G16.g_72_148 (reverse)

seq1  TCCCTCCCTCCCTCCCTCCCTCCCTCTCTCTCTCTTTCTTTTTTTAATGT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCCTCCCTCCCTCCCTCCCTCCCTCTCTCTCTCTTTCTTTTTTTAATGT  50

seq1  AGCCCACTCCAGGCCTCTGACTCTGAT  77
      |||||||||||||||||||||||||||
seq2  AGCCCACTCCAGGCCTCTGACTCTGAT  77