BAC Information

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BAC

Clone NameB6Ng01-246E14
Chromosome5 (Build37)
Map Location 58,031,089 - 58,032,250
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC100041335, LOC100041349, LOC666455, LOC625721, EG666465
Downstream genePcdh7, LOC100041385
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-246E14.bB6Ng01-246E14.g
ACCGA054939GA054940
length1,1641,153
definitionB6Ng01-246E14.b B6Ng01-246E14.g
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
gaattctctaaacccaaataacaacaacaacaggagaacacaaaggatat
ggtgactcctagaattggtatgtatgtacttgagcagcatgtagctttta
agactgataaacaaaacagaacagaacaaaaaacaaaacaacaagaaaag
caagacaaaccttaaattttatagacttgaaacgtgtgtgtttattgaac
atgagttgtcttcctgaaacgcacaccgtgtttgacactcccagctttgt
gatgaaacgaagctttggctacaagaagaggcttctttttgcaagtccac
aaccacagattcagtctctgatcctgtatactatgattaattcagatatc
ttctgccttcaagtccctgccatgtttgagttcctattctgagttccttc
agtgatgaacagtgatatgaaagtgtaagccaaataaactctttctgctc
caactcgctttctagttgaggtgtttcaatgcagttctcaataccctatc
taagacattgttagagattagactggtaaaacaaaataacgtcaacaaaa
accctaattaatacattcttgtattttttttctaagcacttttttggctc
agttgcttttgcttgttgtctcatttaagcttactttagagtgagaatat
cagctttttgcagagaaattttcaagcctttctgcccccccagaccccat
gatttaagctgtgccttttccagttctttttggtagtgtcttacctagaa
tgctttccacttccaatattttagacataagcccatcttatgaacaataa
ttcttactttgcatttctgcttaggcacacctttctgtttgataagcaaa
taagtacagaataagttatttgtgtgatttgatttctcagaattttctac
tttttatataaagaatggcaccactcctttccttaattaagggattatgt
cggcacacttagttatttggaaattcatattatttcctgttgactccaag
aatattcactttctcacattctagaggcaatgcaatgtgttgtgtattct
ggtattgaaacaaataacatctatatagatgtttaaattctcattcgagg
aatttataggttttatagaagtaaattcatatatcaaggacatctggcag
ttggagtcagtatt
gaattctgaacaaaaagcttctggtctagagctctttttgtttgggagac
tcataacaagtacttctatttccttaggggttgtagtatcattcagatgg
tttacctgatcttgatttagttttggtagataacatctatctagaatatc
atccattttatttagattttccaatgttgtggagtacaggcttttgaagt
cagacctaattattctttgaatttccttggtgtccgttgttatgtcttgc
tttccatttctgattttgttaatttgggtgctatctctctgcctttaagt
tagtttagctaagcacttgtctatcttgtttattttctcaaagaaccagc
ttttgaattccttgattctttgtattgttctcttagtttctaactgattg
acttccgtgctgagtttgattatttacttccatttactcctcctgtgttt
gctattattttcctagagccttcagatgtacttttaattcattagtatga
gtattctctaatttctttatgagagcattaatgctatgcactttcctttt
accactgttttcataatgtccaataagtttaggtacaattcagaaaattc
tttacttcctttcttcatttcttccctgatgcagtcgttatttagaggag
aattgttcagttttcttttgagtatgtaggcttcttattgtttttgttgt
tgaagtctaactttaataaatggtgatctgataagatgcatggggtcatt
tcaatccttgcatgtgttgaagtttgctttgtgaccacttatacattcaa
tttttttaagaaggttctattaggtgatcagaaaaaagtatatttctttt
gtgtttggataaaattattctatagatatcttgttaggtccatttgaatc
atatccctgttagttttgttatttctctgtttagtttctatctcagttac
ttgtccaataggtgaaagtggtgaaattgaagttttcacactattaatgt
gtggggatcaatgaatgatttaagttaagtatgttttctttatggatata
gatgacttttattggtgccaatgaagtgttaagaattgagaatcctcctt
ggagccttctccctttatagtgtaatgaagaaaatcctctctctcgttcc
tcg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr5_58031089_58032250
seq2: B6Ng01-246E14.b_48_1211 (reverse)

seq1  AATACTGACT-CAACAGCCAGATGTCCTTGTATA-ATGATTTTTAACTCT  48
      |||||||||| |||| |||||||||||||| ||| ||||  ||||  |||
seq2  AATACTGACTCCAACTGCCAGATGTCCTTG-ATATATGA-ATTTACTTCT  48

seq1  ATAAAAACTTAATAAATTCCCTTCGAATGAGAA-TTAAACATCTTATATA  97
      |||||| ||  |||||||||  ||||||||||| ||||||||| ||||||
seq2  ATAAAACCT--ATAAATTCC--TCGAATGAGAATTTAAACATC-TATATA  93

seq1  GATG-TATTTGTTTCATTA-CAGAATACACAACACATTGCATTGCCTCTA  145
      |||| ||||||||||| || ||||||||||||||||||||||||||||||
seq2  GATGTTATTTGTTTCAATACCAGAATACACAACACATTGCATTGCCTCTA  143

seq1  GAATGTGAGAAAGTGAATA-TCTTGGAGTCAACAGG-AATAATATGAATT  193
      ||||||||||||||||||| |||||||||||||||| |||||||||||||
seq2  GAATGTGAGAAAGTGAATATTCTTGGAGTCAACAGGAAATAATATGAATT  193

seq1  TCCAAAT-ACTAAGTGTGCCGACATAATCCCTT-ATTAAGGAAAGGAGTG  241
      ||||||| ||||||||||||||||||||||||| ||||||||||||||||
seq2  TCCAAATAACTAAGTGTGCCGACATAATCCCTTAATTAAGGAAAGGAGTG  243

seq1  GTGCCATTCTTTATATAAAAAGTAGAAAATTCTGAGAAATCAAATCACAC  291
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGCCATTCTTTATATAAAAAGTAGAAAATTCTGAGAAATCAAATCACAC  293

seq1  AAATAACTTATTCTGTACTTATTTGCTTATCAAACAGAAAGGTGTGCCTA  341
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATAACTTATTCTGTACTTATTTGCTTATCAAACAGAAAGGTGTGCCTA  343

seq1  AGCAGAAATGCAAAGTAAGAATTATTGTTCATAAGATGGGCTTATGTCTA  391
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCAGAAATGCAAAGTAAGAATTATTGTTCATAAGATGGGCTTATGTCTA  393

seq1  AAATATTGGAAGTGGAAAGCATTCTAGGTAAGACACTACCAAAAAGAACT  441
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATATTGGAAGTGGAAAGCATTCTAGGTAAGACACTACCAAAAAGAACT  443

seq1  GGAAAAGGCACAGCTTAAATCATGGGGTCTGGGGGGGCAGAAAGGCTTGA  491
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAAAAGGCACAGCTTAAATCATGGGGTCTGGGGGGGCAGAAAGGCTTGA  493

seq1  AAATTTCTCTGCAAAAAGCTGATATTCTCACTCTAAAGTAAGCTTAAATG  541
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATTTCTCTGCAAAAAGCTGATATTCTCACTCTAAAGTAAGCTTAAATG  543

seq1  AGACAACAAGCAAAAGCAACTGAGCCAAAAAAGTGCTTAGAAAAAAAATA  591
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGACAACAAGCAAAAGCAACTGAGCCAAAAAAGTGCTTAGAAAAAAAATA  593

seq1  CAAGAATGTATTAATTAGGGTTTTTGTTGACGTTATTTTGTTTTACCAGT  641
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAGAATGTATTAATTAGGGTTTTTGTTGACGTTATTTTGTTTTACCAGT  643

seq1  CTAATCTCTAACAATGTCTTAGATAGGGTATTGAGAACTGCATTGAAACA  691
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAATCTCTAACAATGTCTTAGATAGGGTATTGAGAACTGCATTGAAACA  693

seq1  CCTCAACTAGAAAGCGAGTTGGAGCAGAAAGAGTTTATTTGGCTTACACT  741
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTCAACTAGAAAGCGAGTTGGAGCAGAAAGAGTTTATTTGGCTTACACT  743

seq1  TTCATATCACTGTTCATCACTGAAGGAACTCAGAATAGGAACTCAAACAT  791
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCATATCACTGTTCATCACTGAAGGAACTCAGAATAGGAACTCAAACAT  793

seq1  GGCAGGGACTTGAAGGCAGAAGATATCTGAATTAATCATAGTATACAGGA  841
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCAGGGACTTGAAGGCAGAAGATATCTGAATTAATCATAGTATACAGGA  843

seq1  TCAGAGACTGAATCTGTGGTTGTGGACTTGCAAAAAGAAGCCTCTTCTTG  891
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGAGACTGAATCTGTGGTTGTGGACTTGCAAAAAGAAGCCTCTTCTTG  893

seq1  TAGCCAAAGCTTCGTTTCATCACAAAGCTGGGAGTGTCAAACACGGTGTG  941
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGCCAAAGCTTCGTTTCATCACAAAGCTGGGAGTGTCAAACACGGTGTG  943

seq1  CGTTTCAGGAAGACAACTCATGTTCAATAAACACACACGTTTCAAGTCTA  991
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGTTTCAGGAAGACAACTCATGTTCAATAAACACACACGTTTCAAGTCTA  993

seq1  TAAAATTTAAGGTTTGTCTTGCTTTTCTTGTTGTTTTGTTTTTTGTTCTG  1041
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAAATTTAAGGTTTGTCTTGCTTTTCTTGTTGTTTTGTTTTTTGTTCTG  1043

seq1  TTCTGTTTTGTTTATCAGTCTTAAAAGCTACATGCTGCTCAAGTACATAC  1091
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTGTTTTGTTTATCAGTCTTAAAAGCTACATGCTGCTCAAGTACATAC  1093

seq1  ATACCAATTCTAGGAGTCACCATATCCTTTGTGTTCTCCTGTTGTTGTTG  1141
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATACCAATTCTAGGAGTCACCATATCCTTTGTGTTCTCCTGTTGTTGTTG  1143

seq1  TTATTTGGGTTTAGAGAATTC  1162
      |||||||||||||||||||||
seq2  TTATTTGGGTTTAGAGAATTC  1164