BAC Information

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BAC

Clone NameB6Ng01-248B15
Chromosome5 (Build37)
Map Location 60,555,295 - 60,695,804
singlet/doubletdoublet
Overlap geneCbfa2t2-ps1
Upstream geneLOC100041425, LOC546866
Downstream geneLOC100041498, LOC666597
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-248B15.bB6Ng01-248B15.g
ACCGA056263GA056264
length1,1091,151
definitionB6Ng01-248B15.b B6Ng01-248B15.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(60,555,295 - 60,556,391)(60,694,642 - 60,695,804)
sequence
gaattcagttgatttttggtcttttgccatatacataagtgatttttttc
tttactatttttatttcttgaaatgtttggagtgcttgttgttatggtat
aacttggcctctctgacagatatactttgctaagtctgttccttcactat
ttttcttaattttatattaatgtgactttatttttctaaaaatgcctaaa
atattttaattaatctgatgtcttatcttatattcagcctccatatccaa
tgtactctcaaattctattccttctactttgaaataaaaatttaaataat
acatattattatatattattatattattcatagctacagtttttttcccc
agtcttctctttccttactactataaaaagtttctggatgaatctttata
aaaaggtcaataacacctttcattggtcaataaagcacacatgatttatt
gctataatgtgagtcaattctgtgatctcttccaaatattctcccttgcc
aaactcttaatctaatttactgttcttgctagaatctctagatagaatat
gtaccaaagatacatgtattaaattcatggcatgcaaatctcccatttgg
cattattgtgaagcagtagaaatattgttagggctcactatgatatcata
gattattagggaaaatatctccagtgggattgtggggtcatattctcttt
tctgttcattattccatacttgacaatgatgtaaaagggttttttccttc
gtgatcctcaacatgacaagatattttaatatatcactgaaagccaatgg
gcagtgattctcaaacatcctaatgatgtgatcctttaatatagttcctc
atgtaatggtgacccccaaccataaagtgattttcatcactacttcataa
ctgtaattgctgctactgctactaatcataatgtaaatatctgattttct
aaatgggcctttatatgagttctatgaaaaggtcacttgaccccccaaag
tagttcatgaccatcagttgagaaccacttgccattaaggtcaaaaaaca
gatgagcccattatagagtttaaacccttaaaactaagagccaacattac
attctttct

gaattctgggatagagataggataagtagattctcacaggaagatgtgag
gagacagacacatattacctgagtctgggtaatcagcaaaatggcagagt
gtagactagaataaatagaaaaatttaagttatgatctagtataagaaaa
ccctaataatatggctaagttatttcttgaaaaacgttgagtctgagtct
tatttctggacatatggggctgagaggaagaaagagaaatgacttctaca
ttagtgcttgggaaactgaggtagtaggatattgcattggagcacacaca
gagaccctattgcacaaagaaacaggtaatggatataaacacaattaatg
ttatcaaaagtctatattttcctgctcaaatattataaatttggtcatag
tacaaattctgactctgatcatagacaccatattcaattactcactttcc
tgtttttgttgtcctttatttttaattaactacaccatattagatgacct
gagaaatcaatgctaaatcacagaaataaacttactattgcattaagagc
acgaacattcttttaattgtgtaactatgcccatatctcttaatatttga
aagaagcgaagattagtactgccgtatggaaatgacatggctaaggtaga
gttttgcattcatagtacaagggagggcttgggtaagtaccaagcactct
tgcctcacacaaattatgtgaagggccatgttatgagtccattcattgta
agtagaagaaggtataagcagcattgatctattgccttgtttccacttga
ccttcataatcttcctaaaacagtaagtcagtacagttacagaggtactt
ggtataacaatgataatgctttcagcttaggaaaatgaaaaatgctatta
attcattatatgcatattattaaagcttggtattaaacataatacttcat
gagaaacaaacacaaagcaaaaggcacatgttgtgaatgaattttatttt
ctttatagacttatttttataataataatacaagagtacatgggcaggaa
gtttgattctagtgtgctgaccacttgtaggaaaacaccctaatgcaata
gcatttatttgtaggacgaagattactgaaaatagaactctttggaattc
a
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr5_60555295_60556391
seq2: B6Ng01-248B15.b_47_1155

seq1  GAATTCAGTTGATTTTTGGTCTTTTGCCATATACATAAGTGATTTTTTTC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAGTTGATTTTTGGTCTTTTGCCATATACATAAGTGATTTTTTTC  50

seq1  TTTACTATTTTTATTTCTTGAAATGTTTGGAGTGCTTGTTGTTATGGTAT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTACTATTTTTATTTCTTGAAATGTTTGGAGTGCTTGTTGTTATGGTAT  100

seq1  AACTTGGCCTCTCTGACAGATATACTTTGCTAAGTCTGTTCCTTCACTAT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTTGGCCTCTCTGACAGATATACTTTGCTAAGTCTGTTCCTTCACTAT  150

seq1  TTTTCTTAATTTTATATTAATGTGACTTTATTTTTCTAAAAATGCCTAAA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTCTTAATTTTATATTAATGTGACTTTATTTTTCTAAAAATGCCTAAA  200

seq1  ATATTTTAATTAATCTGATGTCTTATCTTATATTCAGCCTCCATATCCAA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATTTTAATTAATCTGATGTCTTATCTTATATTCAGCCTCCATATCCAA  250

seq1  TGTACTCTCAAATTCTATTCCTTCTACTTTGAAATAAAAATTTAAATAAT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTACTCTCAAATTCTATTCCTTCTACTTTGAAATAAAAATTTAAATAAT  300

seq1  ACATATTATTATATATTATTATATTATTCATAGCTACAGTTTTTTTCCCC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATATTATTATATATTATTATATTATTCATAGCTACAGTTTTTTTCCCC  350

seq1  AGTCTTCTCTTTCCTTACTACTATAAAAAGTTTCTGGATGAATCTTTATA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTCTTCTCTTTCCTTACTACTATAAAAAGTTTCTGGATGAATCTTTATA  400

seq1  AAAAGGTCAATAACACCTTTCATTGGTCAATAAAGCACACATGATTTATT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAGGTCAATAACACCTTTCATTGGTCAATAAAGCACACATGATTTATT  450

seq1  GCTATAATGTGAGTCAATTCTGTGATCTCTTCCAAATATTCTCCCTTGCC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTATAATGTGAGTCAATTCTGTGATCTCTTCCAAATATTCTCCCTTGCC  500

seq1  AAACTCTTAATCTAATTTACTGTTCTTGCTAGAATCTCTAGATAGAATAT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACTCTTAATCTAATTTACTGTTCTTGCTAGAATCTCTAGATAGAATAT  550

seq1  GTACCAAAGATACATGTATTAAATTCATGGCATGCAAATCTCCCATTTGG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTACCAAAGATACATGTATTAAATTCATGGCATGCAAATCTCCCATTTGG  600

seq1  CATTATTGTGAAGCAGTAGAAATATTGTTAGGGCTCACTATGATATCATA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTATTGTGAAGCAGTAGAAATATTGTTAGGGCTCACTATGATATCATA  650

seq1  GATTATTAGGGAAAATATCTCCAGTGGGATTGTGGGGTCATATTCTCTTT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATTATTAGGGAAAATATCTCCAGTGGGATTGTGGGGTCATATTCTCTTT  700

seq1  TCTGTTCATTATTCCATACTTGACAATGATGTAAAAGGGTTTTTTCCTTC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGTTCATTATTCCATACTTGACAATGATGTAAAAGGGTTTTTTCCTTC  750

seq1  GTGATCCTCAACATGACAAGATATTTTAATATATCACTGAAAGCCAATGG  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGATCCTCAACATGACAAGATATTTTAATATATCACTGAAAGCCAATGG  800

seq1  GCAGTGATTCTCAAACATCCTAATGATGTGATCCTTTAATATAGTTCCTC  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAGTGATTCTCAAACATCCTAATGATGTGATCCTTTAATATAGTTCCTC  850

seq1  ATGTAATGGTGACCCCCAACCATAAAGTGATTTTCATCACTACTTCATAA  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTAATGGTGACCCCCAACCATAAAGTGATTTTCATCACTACTTCATAA  900

seq1  CTGTAATTGCTGCTACTGCTACTAATCATAATGTAAATATCTGATTTTCT  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTAATTGCTGCTACTGCTACTAATCATAATGTAAATATCTGATTTTCT  950

seq1  AAATGG--CCTTATATGAGTTCTATGAAAGGGTCACTTGA-CCCCCAAAG  997
      ||||||  | ||||||||||||||||||| |||||||||| |||||||||
seq2  AAATGGGCCTTTATATGAGTTCTATGAAAAGGTCACTTGACCCCCCAAAG  1000

seq1  TAG-TCATGACCATCAGTTTGAGAACCAC-TGCCA-TAAGGTC-AAAAAC  1043
      ||| ||||||||||||| ||||||||||| ||||| ||||||| ||||||
seq2  TAGTTCATGACCATCAG-TTGAGAACCACTTGCCATTAAGGTCAAAAAAC  1049

seq1  AGATGAGCC--ATATAGAG-TTAAACCC-TAAAACTAGGAGCCAACA-TA  1088
      |||||||||   ||||||| |||||||| |||||||| ||||||||| ||
seq2  AGATGAGCCCATTATAGAGTTTAAACCCTTAAAACTAAGAGCCAACATTA  1099

seq1  CA-TCTTTCT  1097
      || |||||||
seq2  CATTCTTTCT  1109


seq1: chr5_60694642_60695804
seq2: B6Ng01-248B15.g_64_1214 (reverse)

seq1  TGAATTCATTAAATGGATCAAAGATGTCTATTTTCAGTAATTTTTCTGTC  50
      |||||||           ||||||  ||||||||||||||| ||   |||
seq2  TGAATTC-----------CAAAGAGTTCTATTTTCAGTAATCTT--CGTC  37

seq1  TTAACAAATAAATGCTATTCCAATAGGGTGTTTTCCTACAAAGTGTTCAG  100
       | |||||||||||||||| || |||||||||||||||| ||||| ||||
seq2  CT-ACAAATAAATGCTATTGCATTAGGGTGTTTTCCTAC-AAGTGGTCAG  85

seq1  CACACTAGAATCAAACTTCCTGCCCATTGTTACTCTTTGTA-TATTATTA  149
      |||||||||||||||||||||||||||   ||||| ||||| ||||||||
seq2  CACACTAGAATCAAACTTCCTGCCCAT--GTACTC-TTGTATTATTATTA  132

seq1  TAAAA--TAGTCTATTAAAAGAAATAAATTCATTCACAACATGTG-CTTT  196
      |||||   ||||||| || | ||  |||||||||||||||||||| ||||
seq2  TAAAAATAAGTCTATAAAGAAAATAAAATTCATTCACAACATGTGCCTTT  182

seq1  TGCTTTGTGTTTGTTTCTCATGAAGTA-TATGTTTAATACCAAGCTTTAA  245
      ||||||||||||||||||||||||||| ||||||||||||||||||||||
seq2  TGCTTTGTGTTTGTTTCTCATGAAGTATTATGTTTAATACCAAGCTTTAA  232

seq1  T-ATATGCATATAATGAATTAATAGCATTTTTCATTTTCCTAAGCTG-AA  293
      | ||||||||||||||||||||||||||||||||||||||||||||| ||
seq2  TAATATGCATATAATGAATTAATAGCATTTTTCATTTTCCTAAGCTGAAA  282

seq1  GCATTATCATTTGTTATACCAAGTACCTCTGTAACTGTACTGACTTACTG  343
      ||||||||| ||||||||||||||||||||||||||||||||||||||||
seq2  GCATTATCA-TTGTTATACCAAGTACCTCTGTAACTGTACTGACTTACTG  331

seq1  TTTTAGGAAGATTATGAAGGTCAAGTGGAAACAAGGCAATAGATCAATGC  393
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTAGGAAGATTATGAAGGTCAAGTGGAAACAAGGCAATAGATCAATGC  381

seq1  TGCTTATACCTTCTTCTACTTACAATGAATGGACTCATAACATGGCCCTT  443
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTTATACCTTCTTCTACTTACAATGAATGGACTCATAACATGGCCCTT  431

seq1  CACATAATTTGTGTGAGGCAAGAGTGCTTGGTACTTACCCAAGCCCTCCC  493
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACATAATTTGTGTGAGGCAAGAGTGCTTGGTACTTACCCAAGCCCTCCC  481

seq1  TTGTACTATGAATGCAAAACTCTACCTTAGCCATGTCATTTCCATACGGC  543
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTACTATGAATGCAAAACTCTACCTTAGCCATGTCATTTCCATACGGC  531

seq1  AGTACTAATCTTCGCTTCTTTCAAATATTAAGAGATATGGGCATAGTTAC  593
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTACTAATCTTCGCTTCTTTCAAATATTAAGAGATATGGGCATAGTTAC  581

seq1  ACAATTAAAAGAATGTTCGTGCTCTTAATGCAATAGTAAGTTTATTTCTG  643
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAATTAAAAGAATGTTCGTGCTCTTAATGCAATAGTAAGTTTATTTCTG  631

seq1  TGATTTAGCATTGATTTCTCAGGTCATCTAATATGGTGTAGTTAATTAAA  693
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGATTTAGCATTGATTTCTCAGGTCATCTAATATGGTGTAGTTAATTAAA  681

seq1  AATAAAGGACAACAAAAACAGGAAAGTGAGTAATTGAATATGGTGTCTAT  743
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATAAAGGACAACAAAAACAGGAAAGTGAGTAATTGAATATGGTGTCTAT  731

seq1  GATCAGAGTCAGAATTTGTACTATGACCAAATTTATAATATTTGAGCAGG  793
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATCAGAGTCAGAATTTGTACTATGACCAAATTTATAATATTTGAGCAGG  781

seq1  AAAATATAGACTTTTGATAACATTAATTGTGTTTATATCCATTACCTGTT  843
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAATATAGACTTTTGATAACATTAATTGTGTTTATATCCATTACCTGTT  831

seq1  TCTTTGTGCAATAGGGTCTCTGTGTGTGCTCCAATGCAATATCCTACTAC  893
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTTGTGCAATAGGGTCTCTGTGTGTGCTCCAATGCAATATCCTACTAC  881

seq1  CTCAGTTTCCCAAGCACTAATGTAGAAGTCATTTCTCTTTCTTCCTCTCA  943
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCAGTTTCCCAAGCACTAATGTAGAAGTCATTTCTCTTTCTTCCTCTCA  931

seq1  GCCCCATATGTCCAGAAATAAGACTCAGACTCAACGTTTTTCAAGAAATA  993
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCCCATATGTCCAGAAATAAGACTCAGACTCAACGTTTTTCAAGAAATA  981

seq1  ACTTAGCCATATTATTAGGGTTTTCTTATACTAGATCATAACTTAAATTT  1043
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTAGCCATATTATTAGGGTTTTCTTATACTAGATCATAACTTAAATTT  1031

seq1  TTCTATTTATTCTAGTCTACACTCTGCCATTTTGCTGATTACCCAGACTC  1093
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTATTTATTCTAGTCTACACTCTGCCATTTTGCTGATTACCCAGACTC  1081

seq1  AGGTAATATGTGTCTGTCTCCTCACATCTTCCTGTGAGAATCTACTTATC  1143
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGTAATATGTGTCTGTCTCCTCACATCTTCCTGTGAGAATCTACTTATC  1131

seq1  CTATCTCTATCCCAGAATTC  1163
      ||||||||||||||||||||
seq2  CTATCTCTATCCCAGAATTC  1151


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