BAC Information

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BAC

Clone NameB6Ng01-248J04
Chromosome5 (Build37)
Map Location 6,253,705 - 6,254,836
singlet/doubletsinglet
Overlap genenone
Upstream genePftk1, 1700015F17Rik, Cldn12, Gtpbp10, LOC667699, EG667705, A330021E22Rik, Steap2, Steap1, LOC727711, LOC546854
Downstream geneLOC100041208, EG435830, LOC100042651
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-248J04.bB6Ng01-248J04.g
ACCGA056614GA056615
length1,1471,180
definitionB6Ng01-248J04.b B6Ng01-248J04.g
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
gaattctttcctttcaaagtacaatttggttgataatcacaatttcaatt
aagcaaatttcctgaaaatcttgcatccatcaccttaaatccatttaaaa
agctttctctcattctaggatgtaggaataactgttatatttaatatgaa
aatgaatattgatatctctcctgataagaaaatgaaaggtctaattttaa
ctaataattatgtcagtgttacaaaatgactaaggggaactggctgataa
tgagtattatccagggctgctgctaagtagaaatgtgataattaaagaat
cttccttttcttataacttaaatggtaatgtctctcttttttctcttgaa
aatttaaataaaaatgtacaccaatttttaaaaaggtacattacaaataa
ataaaatgtaaatatacttgcgatcttatagaagggttgaatcagctatt
ttcagatatacctatattatcatagatctgggaattgtaagtattatgtg
tcaataaatactgaattgatagtaaaatttcttgccacaaatctctcatt
ttttttcaataaagtaagagagatatgattaactttatataaacaccatt
gatgtatatatatatgttcaagggaaatagctagctcaacaatgtaaatt
atgaagtaattagcaagcagtaaaaagacgtatggtaaaaaaataaaaac
aacttcctgtaatttctttctgaagtattccacattaattatattcacat
aaaattgcttccatggagtttctttcctctacacaggctgtactttgatg
tggacagtgaacaaaagtcacttatgtcatttattcacacattattgtct
tagcctctgctaaatatcaaagaaatgattatgttagagaattaaacact
atttcttgtgctcagaaattcttattcatctcatattgaaggtgaataga
ttcaatcaacagagaactggatgcaggagaacaaatacccaggagaagac
ataaggggtctcctgaggtaccagcctaaaacctgctacttaacatggga
agaacatacctggcaccacgaaaatccccactgtttgctttgtgcctcac
tctctcctcctcctgaactaaactgtttggtgcagatcttatataat

gaattctcacctgagcgaataccgaatggcagagaagcacctgaaaaaat
gttcaacatccttaatcatcagggaaatgcaaatcaaaacaacactgaga
ttccacttcactccagtcagaatggctaagataaaaaactcaggtgacag
cagatgctggcgtggatgtggagaaagaggaacactcctccattgttgat
gggattgcaagcttgtacaaccactctggaaatcagtctggcggttcttc
agaaaattggacatagtactacaggaggatcccacaatacctctcctggg
catatatccagaagatgtcccaaccggtaagcaggacacatgctccacta
tgttcatagcagccttatttataatagccagaagctggaaagaacccaga
tgcccctcaacaatggaatggatacagaaaatgtggtacatttacacaat
ggaatactactcagctattaaaaaatgaatttatgaaattcctaggcaaa
tggatggacctggagggtatcatcctgagtgaagtaacccaatcacaaag
gaattcgcacaatatgtactcactgataagtggatattagcccagaaact
taggatacccaagatataagatacaacttgccaaacgcatgtaattcaag
aagaacgaagaccaaagtgtggacactgtaccctttcttagaaatgggaa
caaaacacccatggaaggagttacagagacaaaatttgggagctgtgata
aaaggatggaccatctggtgattgccatatgcggggatccatcccatgat
cagcttccaaatgctgacaccattgccatacactcacgggattttgctga
agggacccagatatagctctctcttgtgaaactaatgccggggcctagca
aacacaagaagtggaatgatcccaatcagctattggatgggtcacacggc
ccccttatgaaggagctagagaaattaaccaagggagctaaggggaactg
cacccctaaaggtggaacacaattatgacttaacagtaccgagaagcttc
ttgtcttttagcctgcattatggtattcaaaaggatggcctatgtccgtc
catcactgctaaagagagaggtccatgaccttgcaacttagtagccccag
gatacagggtatcagcagatgtccataatc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr5_6253705_6254836
seq2: B6Ng01-248J04.b_45_1191

seq1  GAATTCTTTCCTTTCAAAGTACAATTTGGTTGATAATCACAATTTCAATT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTTTCCTTTCAAAGTACAATTTGGTTGATAATCACAATTTCAATT  50

seq1  AAGCAAATTTCCTGAAAATCTTGCATCCATCACCTTAAATCCATTTAAAA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGCAAATTTCCTGAAAATCTTGCATCCATCACCTTAAATCCATTTAAAA  100

seq1  AGCTTTCTCTCATTCTAGGATGTAGGAATAACTGTTATATTTAATATGAA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCTTTCTCTCATTCTAGGATGTAGGAATAACTGTTATATTTAATATGAA  150

seq1  AATGAATATTGATATCTCTCCTGATAAGAAAATGAAAGGTCTAATTTTAA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGAATATTGATATCTCTCCTGATAAGAAAATGAAAGGTCTAATTTTAA  200

seq1  CTAATAATTATGTCAGTGTTACAAAATGACTAAGGGGAACTGGCTGATAA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAATAATTATGTCAGTGTTACAAAATGACTAAGGGGAACTGGCTGATAA  250

seq1  TGAGTATTATCCAGGGCTGCTGCTAAGTAGAAATGTGATAATTAAAGAAT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGTATTATCCAGGGCTGCTGCTAAGTAGAAATGTGATAATTAAAGAAT  300

seq1  CTTCCTTTTCTTATAACTTAAATGGTAATGTCTCTCTTTTTTCTCTTGAA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCCTTTTCTTATAACTTAAATGGTAATGTCTCTCTTTTTTCTCTTGAA  350

seq1  AATTTAAATAAAAATGTACACCAATTTTTAAAAAGGTACATTACAAATAA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTTAAATAAAAATGTACACCAATTTTTAAAAAGGTACATTACAAATAA  400

seq1  ATAAAATGTAAATATACTTGCGATCTTATAGAAGGGTTGAATCAGCTATT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAAAATGTAAATATACTTGCGATCTTATAGAAGGGTTGAATCAGCTATT  450

seq1  TTCAGATATACCTATATTATCATAGATCTGGGAATTGTAAGTATTATGTG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCAGATATACCTATATTATCATAGATCTGGGAATTGTAAGTATTATGTG  500

seq1  TCAATAAATACTGAATTGATAGTAAAATTTCTTGCCACAAATCTCTCATT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAATAAATACTGAATTGATAGTAAAATTTCTTGCCACAAATCTCTCATT  550

seq1  TTTTTTCAATAAAGTAAGAGAGATATGATTAACTTTATATAAACACCATT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTTCAATAAAGTAAGAGAGATATGATTAACTTTATATAAACACCATT  600

seq1  GATGTATATATATATGTTCAAGGGAAATAGCTAGCTCAACAATGTAAATT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATGTATATATATATGTTCAAGGGAAATAGCTAGCTCAACAATGTAAATT  650

seq1  ATGAAGTAATTAGCAAGCAGTAAAAAGACGTATGGTAAAAAAATAAAAAC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGAAGTAATTAGCAAGCAGTAAAAAGACGTATGGTAAAAAAATAAAAAC  700

seq1  AACTTCCTGTAATTTCTTTCTGAAGTATTCCACATTAATTATATTCACAT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTTCCTGTAATTTCTTTCTGAAGTATTCCACATTAATTATATTCACAT  750

seq1  AAAATTGCTTCCATGGAGTTTCTTTCCTCTACACAGGCTGTACTTTGATG  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAATTGCTTCCATGGAGTTTCTTTCCTCTACACAGGCTGTACTTTGATG  800

seq1  TGGACAGTGAACAAAAGTCACTTATGTCATTTATTCACACATTATTGTCT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGACAGTGAACAAAAGTCACTTATGTCATTTATTCACACATTATTGTCT  850

seq1  TAGCCTCTGCTAAATATCAAAGAAATGATTATG-TAGAGAA-TAAACACT  898
      ||||||||||||||||||||||||||||||||| ||||||| ||||||||
seq2  TAGCCTCTGCTAAATATCAAAGAAATGATTATGTTAGAGAATTAAACACT  900

seq1  A-TTCTTGTGCTCAGAAATTC-TATTCATCTCATATTGAAGGTGAATAGA  946
      | ||||||||||||||||||| ||||||||||||||||||||||||||||
seq2  ATTTCTTGTGCTCAGAAATTCTTATTCATCTCATATTGAAGGTGAATAGA  950

seq1  TCAAATCAAACAGAGAACT-GATGCAGGAGAACAAATA-CCAGGAG-AGA  993
      |  |||| ||||||||||| |||||||||||||||||| ||||||| |||
seq2  TTCAATC-AACAGAGAACTGGATGCAGGAGAACAAATACCCAGGAGAAGA  999

seq1  CATAA-GGGTCT-CTGAGGTACCAGCCTAAAA-CTGCTAC-TAACAT-GG  1038
      ||||| |||||| ||||||||||||||||||| ||||||| |||||| ||
seq2  CATAAGGGGTCTCCTGAGGTACCAGCCTAAAACCTGCTACTTAACATGGG  1049

seq1  AAG-ACATACCT-GCA-CACGAAAAT-CCCACTGTTTGCTTTGTG-CTCA  1083
      ||| |||||||| ||| ||||||||| |||||||||||||||||| ||||
seq2  AAGAACATACCTGGCACCACGAAAATCCCCACTGTTTGCTTTGTGCCTCA  1099

seq1  CT-TCTCTTTCTCTCTCTG-ACTAAACTGTTTGGTGCAGAATCTATATAA  1131
      || |||| | |||   ||| ||||||||||||||||||||   |||||||
seq2  CTCTCTCCTCCTC---CTGAACTAAACTGTTTGGTGCAGATCTTATATAA  1146

seq1  T  1132
      |
seq2  T  1147


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