BAC Information

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BAC

Clone NameB6Ng01-250N17
Chromosome5 (Build37)
Map Location 82,665,925 - 82,667,056
singlet/doubletsinglet
Overlap genenone
Upstream geneLphn3
Downstream geneEG433912, LOC100039434
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-250N17.bB6Ng01-250N17.g
ACCGA058284GA058285
length1,1331,213
definitionB6Ng01-250N17.b B6Ng01-250N17.g
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
gaattcacttataaatattaatctttaatggagattggaggcttgagtct
tacaaaaagaacaactattctttaattctttaataacatcctgatcagac
tcttttggtatttccatctacctcttatccatgcatcagaatttttccat
tataaatattttttcaaatatttttagtttttcaagatgttgaaggatag
tcctgttggtcaaaaaaaaaaaaagtattgttggttttctataacagatt
atcattgttttaaaatcagaaaatatattttatgataatctcattgtgtt
tacttgaagtgttttatcttttgtttttaaatacttaagtaaaaccataa
tcagaatataatctatcaaaaatctatttttaataaaatacaaaaagaaa
caaacaacaacgataaacttttatgcaatttttaccaggttgtaatgtag
agtttgaggaaaactgaatccaagtacctgggtcaaactgacaccaattt
gactctcaaaataaaccatctcatttttccttaaaaattgataaaataaa
atatactaaagtatagtgcgaggactatgttgggtgcaacatgtttacag
ttaaggaactaatgctattttatttcacctgacctttccataagccactg
gggaacggtaaattcctcaatgaagtcctcaaaattgaagtcaaactaca
aagaaactgggaattattttacaactccctgaatccacataaacttgtgc
aatagtgtaacatggaaatgactaggaaattaatccttcacctctaaata
caccaatgttaaaacaaaacaacaaaacccaagcatccatttcacaaagg
agggggaaaggtaagttttattttaagaaaacataggaactatttctcct
aatgtatgtcagcatcaactcctgttcctcctgaagaactcaatttgcta
tgccgccgacgtacgtttagctatttgaacagtccactcacagatacgag
atggggaaagagtgggtaatctcatcttgagaaggatatctcatgaaaca
gcttcatgcaaatcatacgtcactgtaatgacacaactaggaaagctgaa
tcatacacgcaccaacctgctatgcttagattt
gaattcattctgaattgctataaggaggctggaccaggttggaggaatag
agaaacatatgaagtaagttaatgagcatgtagcctcccatactttctgt
ctccagctagtttatcttttagctcagatgttttttcagagttaaaaaaa
aataaaaaataaaaagaacaagagatctagcacatagcacatatggatct
aatgagaaatcatcaactgtatcaagaaattaatatttaattaagaacac
tctgccagaaatcagaatattggcattttccatgatgaagtgaaattcaa
caaacatgctgaactctcagtcccagtacttctgacggtgactgtgttgg
gaacaaggaaggtctttagaagtgtgatcaaaatgagatgaagtcatgct
tactgcgctaaagtgtgtaatatttaagtaagactgaagccctgatgaaa
agagaaagaagtcggtaatgcacaaagcaggtcatcctgggaagacaaag
accaaagtgctgcctcttcagaacttaggagagggatgaggaagagtctc
ctcaaaaacccacaaagaggaactaaccctgtggatatttttcattctga
cttctattacccaaaattatgacagaaaaacccaagtgttagtggatatt
agtcccaaacctaggatacccaagatataagatacaatttgctaaacaca
tgaaactcaagaagaatgaagactgaagtgtggacactatgcccctcctt
agaattgggaacaaaacacccatggaaggagttacaaagacaaagtttgg
agctgagatgaaaggatggaccatgtagagactgccatatccaggggatc
caccccataatcagcatccaaacgctgacaccattgcatatactagcaga
ttttattgaaaggacgcagatgtagctgtctcttgtgagactatgccggg
gcctagcaaacacaggaagtggatgctcacagtcagctatgggatggatc
acggggctcccgatgaaggagctagagaagtacccaaggagctaagggat
ctgcaccctataggtggaacaacattaagtactaccagtagccccgggag
cctctggacctctagcctgccatatgtatcaaagaatggcctagtcgcat
cactggaggagaattccaatggaacatgctcaacattatattgttcccca
gtaccgagggggt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr5_82665925_82667056
seq2: B6Ng01-250N17.b_43_1175

seq1  GAATTCACTTATAAATATTAATCTTTAATGGAGATTGGAGGCTTGAGTCT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCACTTATAAATATTAATCTTTAATGGAGATTGGAGGCTTGAGTCT  50

seq1  TACAAAAAGAACAACTATTCTTTAATTCTTTAATAACATCCTGATCAGAC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACAAAAAGAACAACTATTCTTTAATTCTTTAATAACATCCTGATCAGAC  100

seq1  TCTTTTGGTATTTCCATCTACCTCTTATCCATGCATCAGAATTTTTCCAT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTTTGGTATTTCCATCTACCTCTTATCCATGCATCAGAATTTTTCCAT  150

seq1  TATAAATATTTTTTCAAATATTTTTAGTTTTTCAAGATGTTGAAGGATAG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATAAATATTTTTTCAAATATTTTTAGTTTTTCAAGATGTTGAAGGATAG  200

seq1  TCCTGTTGGTCAAAAAAAAAAAAAGTATTGTTGGTTTTCTATAACAGATT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTGTTGGTCAAAAAAAAAAAAAGTATTGTTGGTTTTCTATAACAGATT  250

seq1  ATCATTGTTTTAAAATCAGAAAATATATTTTATGATAATCTCATTGTGTT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCATTGTTTTAAAATCAGAAAATATATTTTATGATAATCTCATTGTGTT  300

seq1  TACTTGAAGTGTTTTATCTTTTGTTTTTAAATACTTAAGTAAAACCATAA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACTTGAAGTGTTTTATCTTTTGTTTTTAAATACTTAAGTAAAACCATAA  350

seq1  TCAGAATATAATCTATCAAAAATCTATTTTTAATAAAATACAAAAAGAAA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGAATATAATCTATCAAAAATCTATTTTTAATAAAATACAAAAAGAAA  400

seq1  CAAACAACAACGATAAACTTTTATGCAATTTTTACCAGGTTGTAATGTAG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAACAACAACGATAAACTTTTATGCAATTTTTACCAGGTTGTAATGTAG  450

seq1  AGTTTGAGGAAAACTGAATCCAAGTACCTGGGTCAAACTGACACCAATTT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTTGAGGAAAACTGAATCCAAGTACCTGGGTCAAACTGACACCAATTT  500

seq1  GACTCTCAAAATAAACCATCTCATTTTTCCTTAAAAATTGATAAAATAAA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACTCTCAAAATAAACCATCTCATTTTTCCTTAAAAATTGATAAAATAAA  550

seq1  ATATACTAAAGTATAGTGCGAGGACTATGTTGGGTGCAACATGTTTACAG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATACTAAAGTATAGTGCGAGGACTATGTTGGGTGCAACATGTTTACAG  600

seq1  TTAAGGAACTAATGCTATTTTATTTCACCTGACCTTTCCATAAGCCACTG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAAGGAACTAATGCTATTTTATTTCACCTGACCTTTCCATAAGCCACTG  650

seq1  GGGAACGGTAAATTCCTCAATGAAGTCCTCAAAATTGAAGTCAAACTACA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGAACGGTAAATTCCTCAATGAAGTCCTCAAAATTGAAGTCAAACTACA  700

seq1  AAGAAACTGGGAATTATTTTACAACTCCCTGAATCCACATAAACTTGTGC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGAAACTGGGAATTATTTTACAACTCCCTGAATCCACATAAACTTGTGC  750

seq1  AATAGTGTAACATGGAAATGACTAGGAAATTAATCCTTCACCTCTAAATA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATAGTGTAACATGGAAATGACTAGGAAATTAATCCTTCACCTCTAAATA  800

seq1  CACCAATGTTAAAACAAAACAACAAAACCCAAGCATCCATTTCACAAAGG  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACCAATGTTAAAACAAAACAACAAAACCCAAGCATCCATTTCACAAAGG  850

seq1  AGGGGGAAAGGTAAGTTTAATTTTAGGAAAACATAGGAACTATTTCTCCT  900
      |||||||||||||||||| |||||| ||||||||||||||||||||||||
seq2  AGGGGGAAAGGTAAGTTTTATTTTAAGAAAACATAGGAACTATTTCTCCT  900

seq1  AATGTATGTCAGCATCAACTCCTGTTCCTCCTGAAGAACTCCATTTGCTA  950
      ||||||||||||||||||||||||||||||||||||||||| ||||||||
seq2  AATGTATGTCAGCATCAACTCCTGTTCCTCCTGAAGAACTCAATTTGCTA  950

seq1  TGCCGCCCAC-TAC-TTTAGCTATTTGAA-AG-CCACTCACAGATAAGGA  996
      ||||||| || ||| |||||||||||||| || |||||||||||| | ||
seq2  TGCCGCCGACGTACGTTTAGCTATTTGAACAGTCCACTCACAGAT-ACGA  999

seq1  GAT-GGGAAAGAGTGGGTAATCTCATCCTGAGAAGATAACCACAGTGAAA  1045
      ||| ||||||||||||||||||||||| |||||||   | | || |||||
seq2  GATGGGGAAAGAGTGGGTAATCTCATCTTGAGAAGGATATCTCA-TGAAA  1048

seq1  CAGCTCAATCCAAATCATACTTCATGGAAATGACACAAC-AGGAGAGCCT  1094
      |||||  || |||||||||| |||  | ||||||||||| |||| || ||
seq2  CAGCTTCATGCAAATCATACGTCACTGTAATGACACAACTAGGAAAG-CT  1097

seq1  TAATCATACCACCGCCCACCCTGCTATGGCCTAGATTT  1132
       ||||||| |||   ||| |||||||| || |||||||
seq2  GAATCATA-CACGCACCAACCTGCTAT-GCTTAGATTT  1133