BAC Information

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BAC

Clone NameB6Ng01-251P22
Chromosome5 (Build37)
Map Location 85,616,937 - 85,618,100
singlet/doubletsinglet
Overlap genenone
Upstream geneEpha5
Downstream geneCenpc1, LOC100039521, AI586015, Ube1l2, Gnrhr
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-251P22.bB6Ng01-251P22.g
ACCGA059112GA059113
length1,1691,155
definitionB6Ng01-251P22.b B6Ng01-251P22.g
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
gaattccttgtaaatcgttggggaatccatttattttgaaacataccatg
acattattatatcttcaacaactccctaaaagaaatgaccattattgtgg
tttttatattcatctgtggcaataacaacatttctgaaaataattaaaat
gagatgaatgtgtctcacggttttcccttattcttatctttcctatatcc
aagaatccctctgaaatcttgcccgagttggataattaaatatattacaa
tattatgatagtcaaaaacccaagtgggtatgaacagtgtttctacaaac
ctttgaatggtaattaaaatgaatgagtcgccatacattattcttacttc
agggttacagggatctttcctttgtcatagtaactgcatagcaggaaaca
gccaacttcctaactggattttcttttcccctttgtgtgtgctatttatt
cactaacagctaatgtgtcaaatcaaattgcttaggattaggttgcaaat
atgtctttcgacatttttttttctaagaagaataactgtgttttaaaatg
tgtttaaggattttacatattctcataaaaatgtggtttaaacaagaaat
tgatatgtattttctaattaaacagtttagactaggtaaattgtctaaaa
ccaaaaaacacacagcagacaataataacaaaaccatctcattgtgaaag
atgcagtgtgtcatagtgtatcccacaatataccctttagtctacacaac
ttgcaaatatttgtttcaatgagttttagccaggtttgaggtctctggct
tctgctacactatcaatactggatactcatctggacccctctttggatat
cctgttcctgactcgtgtcatgaagattacggggttttcggatgtatagg
actgggcttcttcacatgctccagcagtacatagagaggatagatgttta
gggctggttaattcaaagtctttggatggggcctgaagcagtagctgaag
tcagtcagcccaccagtcctccttgaaacacacactagggccaactctcc
agcactgctccttgcatcatactcttagcaaggcaaggagcaaggacagt
tctttcatctcatgttcctcaaggtgactcacttgtcccgttgcactgga
aggcactacttactatgct

gaattctcacctgaggaataccgaatggcagagaagcacctgaaaaaatg
ttcaacatccttaatcatcagggaaatgcaaatcaaaacaaccctgagat
tccacctcataccagtcagaatgtctaagatcaaaaattcaggtgacagc
agatgctggcgaggatgtggagaaagaggaacactcctccattgttggtg
ggattgcaggcttgtacaaccactctggaaatccgtctggcggttcctca
gaaaattggacatagtactaccggaggatccagcaatacctctcctgggc
atatatccagaagatgccccaactggtaagaaggacacatgctccactat
gttcatagcagccttatttataatagccagaagctggaaagaacccagat
gcccctcaacagaggaatggatacagaaaatgtggtacatctacacaatg
gagtactactcagctattaaaaagaatgaatttatgaaattcctagccaa
atggatggacctggagggcatcatcctgagtgaggtaacacattcacaaa
ggaactcacacaatatgtgctcactgataagtggatattagcccaaaacc
taggatacccaagatataagatacaatttcctaaactcatgaaactcaag
aaaaatgaagactgaagtgtggacactatgcccctccttagaagtgggaa
caaaacacccttggaaggagttacagagacaaagtttggagctgagatga
aaggatggaccatgtagagactgccttatccagggatccaccccataacc
agcatccaaacgctgacaccattgcatacactagcaagattttatcaaaa
ggacccagatgtagctgtctcttgtgagactatgccggggcctagcaaac
acagaagtggatgcccacagtcagctaatggatggatcacaggctcccaa
tggaggaggtagagaagtacccaaggagctaaagggatctgcacctatag
tgatcaacattatgactaaccagtacccgagctctggactctagctgcat
atggtatccaaagattgctagttcgcatcactggaagagagtccatgaca
ccaacttaaatgccagactggtatcgtcaagccaaaaggggcatcgggtc
gtcgg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr5_85616937_85618100
seq2: B6Ng01-251P22.b_44_1212

seq1  GAATTCCTTGTAAATCGTTGGGGAATCCATTTATTTTGAAACATACCATG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCTTGTAAATCGTTGGGGAATCCATTTATTTTGAAACATACCATG  50

seq1  ACATTATTATATCTTCAACAACTCCCTAAAAGAAATGACCATTATTGTGG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATTATTATATCTTCAACAACTCCCTAAAAGAAATGACCATTATTGTGG  100

seq1  TTTTTATATTCATCTGTGGCAATAACAACATTTCTGAAAATAATTAAAAT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTATATTCATCTGTGGCAATAACAACATTTCTGAAAATAATTAAAAT  150

seq1  GAGATGAATGTGTCTCACGGTTTTCCCTTATTCTTATCTTTCCTATATCC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGATGAATGTGTCTCACGGTTTTCCCTTATTCTTATCTTTCCTATATCC  200

seq1  AAGAATCCCTCTGAAATCTTGCCCGAGTTGGATAATTAAATATATTACAA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGAATCCCTCTGAAATCTTGCCCGAGTTGGATAATTAAATATATTACAA  250

seq1  TATTATGATAGTCAAAAACCCAAGTGGGTATGAACAGTGTTTCTACAAAC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTATGATAGTCAAAAACCCAAGTGGGTATGAACAGTGTTTCTACAAAC  300

seq1  CTTTGAATGGTAATTAAAATGAATGAGTCGCCATACATTATTCTTACTTC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTGAATGGTAATTAAAATGAATGAGTCGCCATACATTATTCTTACTTC  350

seq1  AGGGTTACAGGGATCTTTCCTTTGTCATAGTAACTGCATAGCAGGAAACA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGGTTACAGGGATCTTTCCTTTGTCATAGTAACTGCATAGCAGGAAACA  400

seq1  GCCAACTTCCTAACTGGATTTTCTTTTCCCCTTTGTGTGTGCTATTTATT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCAACTTCCTAACTGGATTTTCTTTTCCCCTTTGTGTGTGCTATTTATT  450

seq1  CACTAACAGCTAATGTGTCAAATCAAATTGCTTAGGATTAGGTTGCAAAT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACTAACAGCTAATGTGTCAAATCAAATTGCTTAGGATTAGGTTGCAAAT  500

seq1  ATGTCTTTCGACATTTTTTTTTCTAAGAAGAATAACTGTGTTTTAAAATG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTCTTTCGACATTTTTTTTTCTAAGAAGAATAACTGTGTTTTAAAATG  550

seq1  TGTTTAAGGATTTTACATATTCTCATAAAAATGTGGTTTAAACAAGAAAT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTTAAGGATTTTACATATTCTCATAAAAATGTGGTTTAAACAAGAAAT  600

seq1  TGATATGTATTTTCTAATTAAACAGTTTAGACTAGGTAAATTGTCTAAAA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGATATGTATTTTCTAATTAAACAGTTTAGACTAGGTAAATTGTCTAAAA  650

seq1  CCAAAAAACACACAGCAGACAATAATAACAAAACCATCTCATTGTGAAAG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAAAAAACACACAGCAGACAATAATAACAAAACCATCTCATTGTGAAAG  700

seq1  ATGCAGTGTGTCATAGTGTATCCCACAATATACCCTTTAGTCTACACAAC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGCAGTGTGTCATAGTGTATCCCACAATATACCCTTTAGTCTACACAAC  750

seq1  TTGCAAATATTTGTTTCAATGAGTTTTAGCCAGGTTTGAGGTCTCTGGCT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGCAAATATTTGTTTCAATGAGTTTTAGCCAGGTTTGAGGTCTCTGGCT  800

seq1  TCTGCTACACTATCAATACTGGATACTCATCTGGACCCCTC-TTGGATAT  849
      ||||||||||||||||||||||||||||||||||||||||| ||||||||
seq2  TCTGCTACACTATCAATACTGGATACTCATCTGGACCCCTCTTTGGATAT  850

seq1  CCTGTTCCTGACTCGTGTCATGAAGATTACGGGG-TTTCGGATGTATAGG  898
      |||||||||||||||||||||||||||||||||| |||||||||||||||
seq2  CCTGTTCCTGACTCGTGTCATGAAGATTACGGGGTTTTCGGATGTATAGG  900

seq1  ACT-GGCCTCTTCACATGCTCCAGCAGTACATAGAGAGGATAGATG-TTA  946
      ||| ||| |||||||||||||||||||||||||||||||||||||| |||
seq2  ACTGGGCTTCTTCACATGCTCCAGCAGTACATAGAGAGGATAGATGTTTA  950

seq1  GGGCTGGTTAATTCAAAGTC-TTGGATGGGGCCTG-AGCAGTAGCTG-AG  993
      |||||||||||||||||||| |||||||||||||| ||||||||||| ||
seq2  GGGCTGGTTAATTCAAAGTCTTTGGATGGGGCCTGAAGCAGTAGCTGAAG  1000

seq1  TCAGTCAGCCCACCAGTCCTCCTGAAACCACACCACTAGGGCCAACTCTC  1043
      |||||||||||||||||||||||  || |||| |||||||||||||||||
seq2  TCAGTCAGCCCACCAGTCCTCCTTGAAACACA-CACTAGGGCCAACTCTC  1049

seq1  CAGCACTGCCCCTGGCATCATACCCTTAGC-AGGCAAGAGGCAGGGCCAG  1092
      ||||||||| ||| ||||||||| |||||| |||||||  ||| || |||
seq2  CAGCACTGCTCCTTGCATCATACTCTTAGCAAGGCAAGGAGCAAGGACAG  1099

seq1  TTCTTTCAATCTCATGTCCTTCAGGTGGGCTCACTTGTCCCTTTGCCACC  1142
      ||||||| ||||||||| | ||| |  | |||||||||||| ||||   |
seq2  TTCTTTC-ATCTCATGTTCCTCAAGGTGACTCACTTGTCCCGTTGC--AC  1146

seq1  TGAAAAGCACTAC-TACTATGCT  1164
      || || ||||||| |||||||||
seq2  TGGAAGGCACTACTTACTATGCT  1169


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