BAC Information

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BAC

Clone NameB6Ng01-253O12
Chromosome5 (Build37)
Map Location 48,639,312 - 48,777,790
singlet/doubletdoublet
Overlap geneSlit2, 4933428G09Rik
Upstream geneLOC100040865, LOC100040876
Downstream geneKcnip4, LOC100041668
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-253O12.bB6Ng01-253O12.g
ACCGA060513GA060514
length1,1401,053
definitionB6Ng01-253O12.b B6Ng01-253O12.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(48,776,617 - 48,777,790)(48,639,312 - 48,640,371)
sequence
gaattctgaggaatacttaatatctattgtaaaaacaaaccccttttcgt
ttaaaattcaatattagcaatatccaaagccagaaagactgagtgacaag
caaggagcctcctctctgggaccttgaattggccaactgcatcttctgca
ggccggctccaaataacaaaccacagcgtctgaaatgcatctccactaga
acttcccctgccaaacacaaaggcatccataagtgtcacatgatcctccc
atccctttttcctgattcattccctagaaaggtctcctgaaggcagacaa
ccatctatctaggagaggtcagcttaaaaagctgtcatcattattcacca
tctgttcactggcatttatttcacaaaggaggtaagcacaattacttctg
ggattcagattctaagatgaccaagtacgtttacaaagtaattacttcat
cagaagtagagtcaggactagtaggtgctggttttacacatgtcctcagg
gttgaccggtttcctgtctagaactcaaacacacacacacacaaaaaaaa
aaactgcattctctaaaccgggcagtggtggcgcacgcctttgatcccag
tatttgggaggcagaggcaggcggatttctgagttccaggacagccaggg
ctacacagagaaaccctgtctccaaaaaacaaaacaaaacaaaaacaaac
aaaaaaacagtccctttaagacttagttcctctgtataaactttaggtgt
tcaccacaaaaacaatacatgcgatttataaattattaaaagtagtagaa
ctagctaattaaggcatggacagcaaagcagtatatataatcatatacat
ttccatgtaattatttagaaaaacacagaaaattaaagttctgctcagaa
gtggtggcacacacctttaatcccagcacttgggaggcagaggcaagcag
attttctgagttcagccagcctggtctacagagtgagttccagacagcca
ggctacacagagaaacttctgttctcgaaaatctcaaaaaaaagaagatg
aatgaagaagatgagagagatgatgagatgagaatcagtctacattgtta
gcaagtagctgatactcttcgatcataagttccaattaat

gaattcaaagaaagaggataaagaggataaaggtttggaaaatttagaaa
gacaatgaaaaaataatgtcctctagagagtcatattttatctggatttg
ctttatcgaagctctggtattagtatggtttgtatatatccatttatcag
atggatacctccaattcatatttatgccactagaccagaggatacaggag
gagagtcctctcccatgtaatctttgagcctcagcatctacctcaccaaa
ggtctttgcaaactcatgccctgttcatgagctacagtatgaaaataaaa
actgctactgtcaggggtgtggctgctgccagaatgctacataaaggagg
aagtggatttagggtaatagatccgagaaggctgcacagcataagtcctg
cttgacctgagggtccagttcattatgtgactcttcccacgacagtggat
ggtgatccagttcaaaggtcctctgtcctgtcagggctcagccatgcgtc
cctggtacacatttctcttccactctgtagatcattaacagttcttctta
ctcacctcttctctctctttcagttcagaagggccctgggaaatgtgaat
agagagcaaagaaatcaaaattaccatttggctcgtgctttgatttgaac
tgtttgggactgacatatatacaaaggaaacactgcattgtgatgcttga
taaaatgtggacattgatttgcacaagataaagtgttatgattttgcaat
aatattttagagggctccctagattatgattcaattgtatacctcagttg
ctaatcagaaagtaatttagctttgaaaactgcctcacatatagctacct
cttgtgtgcaagcatgacaagtttatgaaactatttaataatatatcata
ttattaatattagactaacatactactatcttaaataaagtaaggtactt
tatagaaatgggtagtacagtctactagatgaaatgatgagatactctag
ctacctccctatgacttcttcattattatactgctgtaaatatcaaattg
taa
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr5_48776617_48777790
seq2: B6Ng01-253O12.b_50_1189 (reverse)

seq1  ATTAATTGAAATTTTATGATTTGAAAGAAGTATTCAGCTACTTTGCTTAA  50
      |||||||| ||  |||||| | |||   |||| |||||||| |||| |||
seq2  ATTAATTGGAA-CTTATGA-TCGAA--GAGTA-TCAGCTAC-TTGC-TAA  43

seq1  CAATGTAGAACTTTGATTTTCTTTCTTTCTTTCTTTCTTTCTTTCTTTCT  100
      |||||||||    ||||| ||                    | || |  |
seq2  CAATGTAGA---CTGATTCTC-------------------ATCTCATCAT  71

seq1  TTCTTTCTTTCTTTCTTTCTTTCTTCTTTTTTTTTTTTGTGGTTTTTCGA  150
       ||| ||  ||||   ||| ||| |||| ||||||||    | |||||||
seq2  CTCTCTC-ATCTT--CTTCATTCATCTTCTTTTTTTT--GAGATTTTCGA  116

seq1  G-ACAG-AGTTTCTCTGTGTAGCCCTGGCTGTCCTGGAACTCACTCTGTA  198
      | |||| ||||||||||||||| ||||||||| |||||||||||||||||
seq2  GAACAGAAGTTTCTCTGTGTAG-CCTGGCTGT-CTGGAACTCACTCTGTA  164

seq1  GACCAGGCTGGCCTTGAACTCAG-AAATCTGCTTGCCTCTGCCTCCCAAG  247
      ||||||||||||  ||||||||| ||||||||||||||||||||||||||
seq2  GACCAGGCTGGC--TGAACTCAGAAAATCTGCTTGCCTCTGCCTCCCAAG  212

seq1  TGCTGGGATTAAAGGTGTGTGCCACCACTTCTGAGCAGAACTTTAATTTT  297
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTGGGATTAAAGGTGTGTGCCACCACTTCTGAGCAGAACTTTAATTTT  262

seq1  CTGTG-TTTTCTAAATAATTACATGGAAATGTATATGATTATATATACTG  346
      ||||| ||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTGTTTTTCTAAATAATTACATGGAAATGTATATGATTATATATACTG  312

seq1  CTTTGCTGTCCATGCCTTAATTAGCTAGTTCTACTACTTTTAATAATTTA  396
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTGCTGTCCATGCCTTAATTAGCTAGTTCTACTACTTTTAATAATTTA  362

seq1  TAAATCGCATGTATTGTTTTTGTGGTGAACACCTAAAGTTTATACAGAGG  446
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAATCGCATGTATTGTTTTTGTGGTGAACACCTAAAGTTTATACAGAGG  412

seq1  AACTAAGTCTTAAAGGGACTGTTTTTTTGTTTGTTTTTGTTTTGTTTTGT  496
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTAAGTCTTAAAGGGACTGTTTTTTTGTTTGTTTTTGTTTTGTTTTGT  462

seq1  TTTTTGGAGACAGGGTTTCTCTGTGTAGCCCTGGCTGTCCTGGAACTCAG  546
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTGGAGACAGGGTTTCTCTGTGTAGCCCTGGCTGTCCTGGAACTCAG  512

seq1  AAATCCGCCTGCCTCTGCCTCCCAAATACTGGGATCAAAGGCGTGCGCCA  596
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATCCGCCTGCCTCTGCCTCCCAAATACTGGGATCAAAGGCGTGCGCCA  562

seq1  CCACTGCCCGGTTTAGAGAATGCAGTTTTTTTTTTTGTGTGTGTGTGTGT  646
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCACTGCCCGGTTTAGAGAATGCAGTTTTTTTTTTTGTGTGTGTGTGTGT  612

seq1  TTGAGTTCTAGACAGGAAACCGGTCAACCCTGAGGACATGTGTAAAACCA  696
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGAGTTCTAGACAGGAAACCGGTCAACCCTGAGGACATGTGTAAAACCA  662

seq1  GCACCTACTAGTCCTGACTCTACTTCTGATGAAGTAATTACTTTGTAAAC  746
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCACCTACTAGTCCTGACTCTACTTCTGATGAAGTAATTACTTTGTAAAC  712

seq1  GTACTTGGTCATCTTAGAATCTGAATCCCAGAAGTAATTGTGCTTACCTC  796
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTACTTGGTCATCTTAGAATCTGAATCCCAGAAGTAATTGTGCTTACCTC  762

seq1  CTTTGTGAAATAAATGCCAGTGAACAGATGGTGAATAATGATGACAGCTT  846
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTGTGAAATAAATGCCAGTGAACAGATGGTGAATAATGATGACAGCTT  812

seq1  TTTAAGCTGACCTCTCCTAGATAGATGGTTGTCTGCCTTCAGGAGACCTT  896
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTAAGCTGACCTCTCCTAGATAGATGGTTGTCTGCCTTCAGGAGACCTT  862

seq1  TCTAGGGAATGAATCAGGAAAAAGGGATGGGAGGATCATGTGACACTTAT  946
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTAGGGAATGAATCAGGAAAAAGGGATGGGAGGATCATGTGACACTTAT  912

seq1  GGATGCCTTTGTGTTTGGCAGGGGAAGTTCTAGTGGAGATGCATTTCAGA  996
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGATGCCTTTGTGTTTGGCAGGGGAAGTTCTAGTGGAGATGCATTTCAGA  962

seq1  CGCTGTGGTTTGTTATTTGGAGCCGGCCTGCAGAAGATGCAGTTGGCCAA  1046
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGCTGTGGTTTGTTATTTGGAGCCGGCCTGCAGAAGATGCAGTTGGCCAA  1012

seq1  TTCAAGGTCCCAGAGAGGAGGCTCCTTGCTTGTCACTCAGTCTTTCTGGC  1096
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCAAGGTCCCAGAGAGGAGGCTCCTTGCTTGTCACTCAGTCTTTCTGGC  1062

seq1  TTTGGATATTGCTAATATTGAATTTTAAACGAAAAGGGGTTTGTTTTTAC  1146
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGGATATTGCTAATATTGAATTTTAAACGAAAAGGGGTTTGTTTTTAC  1112

seq1  AATAGATATTAAGTATTCCTCAGAATTC  1174
      ||||||||||||||||||||||||||||
seq2  AATAGATATTAAGTATTCCTCAGAATTC  1140


seq1: chr5_48639312_48640371
seq2: B6Ng01-253O12.g_68_1120

seq1  GAATTCAAAGAAAGAGGATAAAGAGGATAAAGGTTTGGAAAATTTAGAAA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAAAGAAAGAGGATAAAGAGGATAAAGGTTTGGAAAATTTAGAAA  50

seq1  GACAATGAAAAAATAATGTCCTCTAGAGAGTCATATTTTATCTGGATTTG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACAATGAAAAAATAATGTCCTCTAGAGAGTCATATTTTATCTGGATTTG  100

seq1  CTTTATCGAAGCTCTGGTATTAGTATGGTTTGTATATATCCATTTATCAG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTATCGAAGCTCTGGTATTAGTATGGTTTGTATATATCCATTTATCAG  150

seq1  ATGGATACCTCCAATTCATATTTATGCCACTAGACCAGAGGATACAGGAG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGGATACCTCCAATTCATATTTATGCCACTAGACCAGAGGATACAGGAG  200

seq1  GAGAGTCCTCTCCCATGTAATCTTTGAGCCTCAGCATCTACCTCACCAAA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGAGTCCTCTCCCATGTAATCTTTGAGCCTCAGCATCTACCTCACCAAA  250

seq1  GGTCTTTGCAAACTCATGCCCTGTTCATGAGCTACAGTATGAAAATAAAA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTCTTTGCAAACTCATGCCCTGTTCATGAGCTACAGTATGAAAATAAAA  300

seq1  ACTGCTACTGTCAGGGGTGTGGCTGCTGCCAGAATGCTACATAAAGGAGG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTGCTACTGTCAGGGGTGTGGCTGCTGCCAGAATGCTACATAAAGGAGG  350

seq1  AAGTGGATTTAGGGTAATAGATCCGAGAAGGCTGCACAGCATAAGTCCTG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTGGATTTAGGGTAATAGATCCGAGAAGGCTGCACAGCATAAGTCCTG  400

seq1  CTTGACCTGAGGGTCCAGTTCATTATGTGACTCTTCCCACGACAGTGGAT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTGACCTGAGGGTCCAGTTCATTATGTGACTCTTCCCACGACAGTGGAT  450

seq1  GGTGATCCAGTTCAAAGGTCCTCTGTCCTGTCAGGGCTCAGCCATGCGTC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTGATCCAGTTCAAAGGTCCTCTGTCCTGTCAGGGCTCAGCCATGCGTC  500

seq1  CCTGGTACACATTTCTCTTCCACTCTGTAGATCATTAACAGTTCTTCTTA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGGTACACATTTCTCTTCCACTCTGTAGATCATTAACAGTTCTTCTTA  550

seq1  CTCACCTCTTCTCTCTCTTTCAGTTCAGAAGGGCCCTGGGAAATGTGAAT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCACCTCTTCTCTCTCTTTCAGTTCAGAAGGGCCCTGGGAAATGTGAAT  600

seq1  AGAGAGCAAAGAAATCAAAATTACCATTTGGCTCGTGCTTTGATTTGAAC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGAGCAAAGAAATCAAAATTACCATTTGGCTCGTGCTTTGATTTGAAC  650

seq1  TGTTTGGGACTGACATATATACAAAGGAAACACTGCATTGTGATGCTTGA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTTGGGACTGACATATATACAAAGGAAACACTGCATTGTGATGCTTGA  700

seq1  TAAAATGTGGACATTGATTTGCACAAGATAAAGTGTTATGATTTTGCAAT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAAATGTGGACATTGATTTGCACAAGATAAAGTGTTATGATTTTGCAAT  750

seq1  AATATTTTAGAGGGCTCCCTAGATTATGATTCAATTGTATACCTCAGTTG  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATATTTTAGAGGGCTCCCTAGATTATGATTCAATTGTATACCTCAGTTG  800

seq1  CTAATCAGAAGGTAATTTAGCTTTGAAAACTGCCTCACATATAGCTACCT  850
      |||||||||| |||||||||||||||||||||||||||||||||||||||
seq2  CTAATCAGAAAGTAATTTAGCTTTGAAAACTGCCTCACATATAGCTACCT  850

seq1  CTTGTGTGCAAGCATGACAAGTTTATGAAACTATTTAATAATAATATCAT  900
      |||||||||||||||||||||||||||||||||||||||||| |||||||
seq2  CTTGTGTGCAAGCATGACAAGTTTATGAAACTATTTAATAAT-ATATCAT  899

seq1  ATTATTAATATTAGACTAACATACTACTATCTTAAATAAAGTAAGGTACT  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTATTAATATTAGACTAACATACTACTATCTTAAATAAAGTAAGGTACT  949

seq1  TTATAGAAATGGGTAAGTACAGGTCTACTAGATTGAAATGATGAGATAAC  1000
      |||||||||||||| |||||| |||||||||| |||||||||||||| ||
seq2  TTATAGAAATGGGT-AGTACA-GTCTACTAGA-TGAAATGATGAGAT-AC  995

seq1  TCTAGCTACTTCCCTATGACTCTTCCATTATTATTACTGCTTGTAAATAT  1050
      ||||||||| |||||||||||  | |||||||| |||||| |||||||||
seq2  TCTAGCTACCTCCCTATGACTTCTTCATTATTA-TACTGC-TGTAAATAT  1043

seq1  CAAATTGTAA  1060
      ||||||||||
seq2  CAAATTGTAA  1053


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