BAC Information

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BAC

Clone NameB6Ng01-254N10
Chromosome5 (Build37)
Map Location 122,773,615 - 122,955,387
singlet/doubletdoublet
Overlap genePptc7, Rad9b, Vps29, 1500011H22Rik, Atpbd1c, Arpc3, Anapc7, Atp2a2
Upstream geneAU042671, Trafd1, C330023M02Rik, Erp29, Tmem116, Adam1b, Adam1a, Mapkapk5, Aldh2, 9330129D05Rik, Acad10, Brap, Atxn2, Sh2b3, A230106M15Rik, Cutl2, LOC100042693, Myl2, Ccdc63, Ppp1cc, Hvcn1, Tect1
Downstream geneIft81, P2rx7, P2rx4, Camkk2, Anapc5, Rnf34, Fbxl10, LOC100039895, Tmem142a, Morn3, LOC623672, BC022593, Rhof, 4932422M17Rik, Setd1b, Hpd, Psmd9, Wdr66, LOC100042824, Bcl7a, Mlxip, LOC673222, Il31, Lrrc43
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-254N10.bB6Ng01-254N10.g
ACCGA061202GA061203
length986979
definitionB6Ng01-254N10.b B6Ng01-254N10.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(122,954,405 - 122,955,387)(122,773,615 - 122,774,581)
sequence
gaattcactatgtagaccaggttagcctaaagctcatcctcacctgcctc
tgcctcctgagcgatggggttacaggtgtgcatgactacatcatgacgcc
gtcgtcatcgtcgtcgttgtcttcttcttcttcttcttcttcctcttcct
cttcctcttcctcttcctcttcctcttcctcttcttcttcttcttcttct
tcttcttctccttctcctcttcctcctcttcctcctccttcttttaaagt
gagaccaaccctttgtttctcccaactttatttctacataaaagggacca
tggattctgcttctgggagtcttgggttcatgatcagttttgccaacctc
taagcaaagaggtgcccagctagaaagcatattaatgtttcagagagcag
tccaaccttcagtagaaaatgctttgcagagaacattccagaagggcaat
ggaatatagtcccaggatctctgagactataggcattgtcttttctggga
gggcagttttgccttctttttgttttgtttaagatttatttatttattat
tatatgtaagtacaccgtagctgtcttcagatgcaccagaagagggtgtc
agatctcattacgcgtggttgtgagccaccatgtggttcctgggacttga
actcaggaccttcagaggagcagtcagtgctcttaaccgctgagccatct
ctccagcccttctttttggtttaaacctaagcttcacagccattcttctc
ataggtaagtggtccagaggccaaaataaatccagcttattgatgaatgg
aaaaattagtacactggagctgagcagacgtttgctgaggccttagtgct
ggcagagcccttcccaagtaactgatgggttgaggagggtggggctctca
ttggttttcatgcatttaactgtaggcactcaataaatgatgagcagtat
ggtggggactgtgcttttgttactgagtatggacca
gaattcattccagcctatgtgtctgggttgggctgggtctggagagactg
ggtataagctccaaggcaggagagtgccctccaccgctgccgctgccgct
gcctttgttctggatagagtagccagcagatggaaacagggcaggagtgg
tttggaggcggctggcgggattggcgagattggctgaagctgtgcgtgtc
tgagtaggttcatggctctgtgtcactgtacagcagctctctttggcaaa
gttgtaacactcactttcttggaaattgtcacagttttacatttaaaaaa
atttgcaatagcaaaaaaaaaaaaaaaaaaaaaaagaaaagaaaaacata
aaacaacataatatgaaacagaagacatttggattctatttctttcaaaa
aagtaaatttatcacaaaattgaacttctcaataaagcagtgtccatgtc
aaaacataactgttagtaggtagtctgtggcaacgatgagtaaatgacga
agcaagtctgagtctgtgtgtactgatgcgctgccttttctgttgagact
atcatcgtgcgtcctaccagaggcaatgacccgaatcgatgttggaaata
taacttatgcaggaatagttctgtaaatacatttaaataaactgtaaaga
tatttaataaatatagtattttatactatttgccactccttttggtttga
atggacaggaactgagacacccaccctcagctcccagattcttggtctgc
ctgacagtgagccagcacctcggagctgtgtctgtggtgcttttactgtc
tgagcatggaccggaattggcttagttatcaacagctacttacccttcct
cagaaattcaccaaacccgactgacaattgagttgtaaaatagagggttt
tgtagctggggtgttgttgcctttccagacagtactgagtgaagaagcta
ccaaaaacacctgtctggggggcaggagg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr5_122954405_122955387
seq2: B6Ng01-254N10.b_49_1034 (reverse)

seq1  TGGTCCATACTCAGTA--CAAAGCACAGTCCCCAACAT-CTGCTCATCAT  47
      ||||||||||||||||   ||||||||||||||| ||| |||||||||||
seq2  TGGTCCATACTCAGTAACAAAAGCACAGTCCCCACCATACTGCTCATCAT  50

seq1  TTATTGAGTGCCTACAGTTTAAATGCATG-AAACCAATGAGAGCCCCACC  96
      ||||||||||||||||| ||||||||||| ||||||||||||||||||||
seq2  TTATTGAGTGCCTACAG-TTAAATGCATGAAAACCAATGAGAGCCCCACC  99

seq1  CTCCTCAACCCATCAGTTACTTGGGAAGGGCTCTGCCAGCACTAAGGCCT  146
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCCTCAACCCATCAGTTACTTGGGAAGGGCTCTGCCAGCACTAAGGCCT  149

seq1  CAGCAAACGTCTGCTCAGCTCCAGTGTACTAATTTTTCCATTCATCAATA  196
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGCAAACGTCTGCTCAGCTCCAGTGTACTAATTTTTCCATTCATCAATA  199

seq1  AGCTGGATTTATTTTGGCCTCTGGACCACTTACCTATGAGAAGAATGGCT  246
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCTGGATTTATTTTGGCCTCTGGACCACTTACCTATGAGAAGAATGGCT  249

seq1  GTGAAGCTTAGGTTTAAACCAAAAAGAAGGGCTGGAGAGATGGCTCAGCG  296
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGAAGCTTAGGTTTAAACCAAAAAGAAGGGCTGGAGAGATGGCTCAGCG  299

seq1  GTTAAGAGCACTGACTGCTCCTCTGAAGGTCCTGAGTTCAAGTCCCAGGA  346
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTAAGAGCACTGACTGCTCCTCTGAAGGTCCTGAGTTCAAGTCCCAGGA  349

seq1  ACCACATGGTGGCTCACAACCACGCGTAATGAGATCTGACACCCTCTTCT  396
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCACATGGTGGCTCACAACCACGCGTAATGAGATCTGACACCCTCTTCT  399

seq1  GGTGCATCTGAAGACAGCTACGGTGTACTTACATATAATAATAAATAAAT  446
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTGCATCTGAAGACAGCTACGGTGTACTTACATATAATAATAAATAAAT  449

seq1  AAATCTTAAACAAAACAAAAAGAAGGCAAAACTGCCCTCCCAGAAAAGAC  496
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATCTTAAACAAAACAAAAAGAAGGCAAAACTGCCCTCCCAGAAAAGAC  499

seq1  AATGCCTATAGTCTCAGAGATCCTGGGACTATATTCCATTGCCCTTCTGG  546
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGCCTATAGTCTCAGAGATCCTGGGACTATATTCCATTGCCCTTCTGG  549

seq1  AATGTTCTCTGCAAAGCATTTTCTACTGAAGGTTGGACTGCTCTCTGAAA  596
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGTTCTCTGCAAAGCATTTTCTACTGAAGGTTGGACTGCTCTCTGAAA  599

seq1  CATTAATATGCTTTCTAGCTGGGCACCTCTTTGCTTAGAGGTTGGCAAAA  646
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTAATATGCTTTCTAGCTGGGCACCTCTTTGCTTAGAGGTTGGCAAAA  649

seq1  CTGATCATGAACCCAAGACTCCCAGAAGCAGAATCCATGGTCCCTTTTAT  696
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGATCATGAACCCAAGACTCCCAGAAGCAGAATCCATGGTCCCTTTTAT  699

seq1  GTAGAAATAAAGTTGGGAGAAACAAAGGGTTGGTCTCACTTTAAAAGAAG  746
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAGAAATAAAGTTGGGAGAAACAAAGGGTTGGTCTCACTTTAAAAGAAG  749

seq1  GAGGAGGAAGAGGAGGAAGAGGAGAAGGAGAAGAAGAAGAAGAAGAAGAA  796
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGGAGGAAGAGGAGGAAGAGGAGAAGGAGAAGAAGAAGAAGAAGAAGAA  799

seq1  GAAGAAGAGGAAGAGGAAGAGGAAGAGGAAGAGGAAGAGGAAGAGGAAGA  846
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGAAGAGGAAGAGGAAGAGGAAGAGGAAGAGGAAGAGGAAGAGGAAGA  849

seq1  AGAAGAAGAAGAAGAAGACAACGACGACGATGACGACGGCGTCATGATGT  896
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAGAAGAAGAAGAAGACAACGACGACGATGACGACGGCGTCATGATGT  899

seq1  AGTCATGCACACCTGTAACCCCATCGCTCAGGAGGCAGAGGCAGGTGAGG  946
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTCATGCACACCTGTAACCCCATCGCTCAGGAGGCAGAGGCAGGTGAGG  949

seq1  ATGAGCTTTAGGCTAACCTGGTCTACATAGTGAATTC  983
      |||||||||||||||||||||||||||||||||||||
seq2  ATGAGCTTTAGGCTAACCTGGTCTACATAGTGAATTC  986

seq1: chr5_122773615_122774581
seq2: B6Ng01-254N10.g_72_1050

seq1  GAATTCATTCCAG-GTATGTGTCTGGGTTGGGCTGGGTCTGGAGAGACTG  49
      |||||||||||||  |||||||||||||||||||||||||||||||||||
seq2  GAATTCATTCCAGCCTATGTGTCTGGGTTGGGCTGGGTCTGGAGAGACTG  50

seq1  GGTATAAGCTCCAAGGCAGGAGAGTGCCCTCCACCGCTGCCGCTGCCGCT  99
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTATAAGCTCCAAGGCAGGAGAGTGCCCTCCACCGCTGCCGCTGCCGCT  100

seq1  GCCTTTGTTCTGGATAGAGTAGCCAGCAGATGGAAACAGGGCAGGAGTGG  149
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCTTTGTTCTGGATAGAGTAGCCAGCAGATGGAAACAGGGCAGGAGTGG  150

seq1  TTTGGAGGCGGCTGGCGGGATTGGCGAGATTGGCTGAAGCTGTGCGTGTC  199
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGGAGGCGGCTGGCGGGATTGGCGAGATTGGCTGAAGCTGTGCGTGTC  200

seq1  TGAGTAGGTTCATGGCTCTGTGTCACTGTACAGCAGCTCTCTTTGGCAAA  249
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGTAGGTTCATGGCTCTGTGTCACTGTACAGCAGCTCTCTTTGGCAAA  250

seq1  GTTGTAACACTCACTTTCTTGGAAATTGTCACAGTTTTACATTTAAAAAA  299
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTGTAACACTCACTTTCTTGGAAATTGTCACAGTTTTACATTTAAAAAA  300

seq1  ATTTGCAATAGCAAAAAAAAAAAAAAAAAAAAAAAGAAAAGAAAAACATA  349
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTGCAATAGCAAAAAAAAAAAAAAAAAAAAAAAGAAAAGAAAAACATA  350

seq1  AAACAACATAATATGAAACAGAAGACATTTGGATTCTATTTCTTTCAAAA  399
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACAACATAATATGAAACAGAAGACATTTGGATTCTATTTCTTTCAAAA  400

seq1  AAGTAAATTTATCACAAAATTGAACTTCTCAATAAAGCAGTGTCCATGTC  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTAAATTTATCACAAAATTGAACTTCTCAATAAAGCAGTGTCCATGTC  450

seq1  AAAACATAACTGTTAGTAGGTAGTCTGTGGCAACGATGAGTAAATGACGA  499
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAACATAACTGTTAGTAGGTAGTCTGTGGCAACGATGAGTAAATGACGA  500

seq1  AGCAAGTCTGAGTCTGTGTGTACTGATGCGCTGCCTTTTCTGTTGAGACT  549
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCAAGTCTGAGTCTGTGTGTACTGATGCGCTGCCTTTTCTGTTGAGACT  550

seq1  ATCATCGTGCGTCCTACCAGAGGCAATGACCCGAATCGATGTTGGAAATA  599
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCATCGTGCGTCCTACCAGAGGCAATGACCCGAATCGATGTTGGAAATA  600

seq1  TAACTTATGCAGGAATAGTTCTGTAAATACATTTAAATAAACTGTAAAGA  649
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAACTTATGCAGGAATAGTTCTGTAAATACATTTAAATAAACTGTAAAGA  650

seq1  TATTTAATAAATATAGTA-TTTATACTATTTGCCACTCC-TTTGGTTTGA  697
      |||||||||||||||||| |||||||||||||||||||| ||||||||||
seq2  TATTTAATAAATATAGTATTTTATACTATTTGCCACTCCTTTTGGTTTGA  700

seq1  ATGGACAGGAACTGAGACACCCACCCTCAGCTCCCAGATTCTTGGTCTGC  747
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGGACAGGAACTGAGACACCCACCCTCAGCTCCCAGATTCTTGGTCTGC  750

seq1  CTGACAGTGAGCCAGCACCTCGGAGCTGTGTCTGTGGTGC-TTTACTGTC  796
      |||||||||||||||||||||||||||||||||||||||| |||||||||
seq2  CTGACAGTGAGCCAGCACCTCGGAGCTGTGTCTGTGGTGCTTTTACTGTC  800

seq1  TGAGCATGGACCGGAA-TGGC-TAGTTATCAACAGCTACTTA-CCTTCCT  843
      |||||||||||||||| |||| |||||||||||||||||||| |||||||
seq2  TGAGCATGGACCGGAATTGGCTTAGTTATCAACAGCTACTTACCCTTCCT  850

seq1  CAGAAATTCACCAAAACCGACTGACAATTGAG-TGTAAAATAGAGGGTTT  892
      ||||||||||||||| |||||||||||||||| |||||||||||||||||
seq2  CAGAAATTCACCAAACCCGACTGACAATTGAGTTGTAAAATAGAGGGTTT  900

seq1  TGTAGCTGGGGTGTTG-TGCC-TTCCAGACAGTACTGAGTGAAGAAGCTA  940
      |||||||||||||||| |||| ||||||||||||||||||||||||||||
seq2  TGTAGCTGGGGTGTTGTTGCCTTTCCAGACAGTACTGAGTGAAGAAGCTA  950

seq1  CCAAAAACA-CTG-CTGGGGGGGAGGAGG  967
      ||||||||| ||| |||||||| ||||||
seq2  CCAAAAACACCTGTCTGGGGGGCAGGAGG  979