BAC Information

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BAC

Clone NameB6Ng01-255O24
Chromosome5 (Build37)
Map Location 72,131,433 - 72,132,510
singlet/doubletsinglet
Overlap geneGabrb1
Upstream geneGabrg1, Gabra2, LOC635092, 4930503B16Rik, Gabra4
Downstream geneLOC666545, Commd8, Atp10d, Corin, Nfxl1, Zar1, EG545758, Cnga1, LOC384275, Npal1, Txk
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-255O24.bB6Ng01-255O24.g
ACCGA062024GA062025
length1,0861,088
definitionB6Ng01-255O24.b B6Ng01-255O24.g
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
gaattctcacctgaggaataccgaatggcagagaagcacctgaaaaaatg
ttcaacatccttaatcatcagggaaatgcaaatcaaaacaaccctgagat
tccacctcacaccagtgagaatggctaagatcaaaaattcaggtgacagc
agatgctggcgaggatgtggagaaagaggaacactcctccattgttggtg
ggattgcaggcttgtacaaccactctggaaatcagtctggcggttcctca
gaaaattggacatagtactaccggaggatccagcaatacctctcctgggc
atatatccagaagaagccccaactggtaagaaggacacatgctccactat
gttcatagcagccttatttataatagccagaaactggaaagaacccagat
gcccctcaacagaggaatggatacagaaaatgtggtacatctacacaatg
gagtactactcagctattaaaaagaatgaatttatgaaattcctagccaa
atggatggacctggagagcatcatcctgagtgaggtaacacaatcacaaa
ggaactcacacaatatgtactcactgataagtggatactagcccaaaacc
taggatacccacgatataagatacaatttcctaaacacatgaaactcaag
aaaaatgaagactgaagtgtggacactatgcccctccttagaagtgggaa
caaaacacccatggaaggagttacagaaacaaagtatggagctgagatga
aaggatggaccatgtagagactgccatatccagggatccaccccataatc
agcttccaaatgctgacaccattgcatacactagcaagattttactgaaa
ggtccagaatgtagctgtctcttgtgagactatgccggggcctagccaac
acagaagtggatgctcacagtcagctaatggatggattcacagggctctc
aatggaggagcttagagaaagtacccaaagagctaaagggatcttcactc
ttaagtggaacaacattatgactaccagtacccctgactcttgactctat
ctgcatatgtatccaaataaatggtctagtcggcat
gaattccaaatcttgatgttctcaaagaatgactgctggcagttagccct
tagtgtgccaagtcactatccaccccatttctacatgaaccattttcatt
ttgttctagtactttgatctcacattgaagtgacaaatttctgcgaatga
aaattcttgaatattaatttcttggctctgaaatcagcatcaaaaaacaa
cgcctaattgagaaacctatttctccacccaaacctggccgggtaaaagg
tagattgcaaacttcatttgttcctctgctatttgggagtgaatgaacac
ttgatgtattttttcgattgatcactggtgacagataggatgatccaaca
cacactgactgcagaccacagcctgcgttaagcagctttctctggaatac
agggtttctttcaaaatgcattgctgaattaatgactgtaagaacatcag
gtctgtgtcacctgccatgaatacatttcagagttggcttaagttttaat
gacagtttggaaagttcattcaggtagtgcttgtgatctgaatctgtgta
gcttttgttgggtcagagattgcaagaaaaggaacacacacacacacaca
cacacacacacacacagagagagagagagagagagagagagagagagaga
gagagaggagagtgcagagatgagattaagaaacaaagaaagaaagggag
aaacaaagaatatatctatgtctctataatatatatgcatatagatatag
ataggtatatttaatccatctatctatctatctatctttctatctatcta
tctatcatctatctatctatcatctatctatctatctatctatctatcta
tcgtgtatatcttacagtgtttctgaatttcctgatgcaccatacatttc
tagatatctccctgatcttttatttcatctggattaaatactgaatgctt
ttgggttcctcagtgaacagaaagaatttacatggcctttatattgggca
tggaaaattccctcatgggaagccattttttaatttgggagtaacacact
cctataaatagccttcttcctctacaattacctttgca
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr5_72131433_72132510
seq2: B6Ng01-255O24.g_69_1156 (reverse)

seq1  TGCAAAGGT-ATTGT-GAGGAAGA--GCTATTTATA-GAGTGTGTTACTT  45
      ||||||||| ||||| ||||||||  |||||||||| |||||||||||| 
seq2  TGCAAAGGTAATTGTAGAGGAAGAAGGCTATTTATAGGAGTGTGTTACTC  50

seq1  CCAAAATTAAAAATGGC-TCCCATGAGG--ATTTT-CATTGCCAATAT-A  90
      ||||| | ||||||||| ||||||||||  ||||| |||  ||||||| |
seq2  CCAAATTAAAAAATGGCTTCCCATGAGGGAATTTTCCATGCCCAATATAA  100

seq1  AGGCCATGTAAATTCTTTCTGTTTCACTGA-GAAACCAAAAGCATTCAGT  139
      ||||||||||||||||||||| |||||||| ||| |||||||||||||||
seq2  AGGCCATGTAAATTCTTTCTG-TTCACTGAGGAACCCAAAAGCATTCAGT  149

seq1  A-TTAATCCAGATGAAATAAAAGATCAGGGAGATATCTGGAAATGTTATG  188
      | |||||||||||||||||||||||||||||||||||| |||||| ||||
seq2  ATTTAATCCAGATGAAATAAAAGATCAGGGAGATATCTAGAAATG-TATG  198

seq1  GTTGCATCAGG-AAGTCAGAAACACTGTAAGATATACACGATAGATAGAT  237
      | ||||||||| || |||||||||||||||||||||||||||||||||||
seq2  G-TGCATCAGGAAATTCAGAAACACTGTAAGATATACACGATAGATAGAT  247

seq1  AGATAGATAGATAGATAGATAGATAGATAGATAGATGATAGATAGATAGA  287
      |||||||||||||||||||| |||||||||||||||||||||||||||||
seq2  AGATAGATAGATAGATAGAT-GATAGATAGATAGATGATAGATAGATAGA  296

seq1  TAGAAAGATAGATAGATAGATAGATGGATT-AATATACCTATCTATATCT  336
      |||||||||||||||||||||||||||||| |||||||||||||||||||
seq2  TAGAAAGATAGATAGATAGATAGATGGATTAAATATACCTATCTATATCT  346

seq1  ATATGCATATATATTATAGAGACATAGATATATTCTTTGTTTCTCCCTTT  386
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATGCATATATATTATAGAGACATAGATATATTCTTTGTTTCTCCCTTT  396

seq1  CTTTCTTTGTTTCTTAATCTCATCTCTGCACTCTCCTCTCTCTCTCTCTC  436
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTCTTTGTTTCTTAATCTCATCTCTGCACTCTCCTCTCTCTCTCTCTC  446

seq1  TCTCTCTCTCTCTCTCTCTCTCTCTCTGTGTGTGTGTGTGTGTGTGTGTG  486
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCTCTCTCTCTCTCTCTCTCTCTCTGTGTGTGTGTGTGTGTGTGTGTG  496

seq1  TGTGTGTGTTCCTTTTCTTGCAATCTCTGACCCAACAAAAGCTACACAGA  536
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGTGTGTTCCTTTTCTTGCAATCTCTGACCCAACAAAAGCTACACAGA  546

seq1  TTCAGATCACAAGCACTACCTGAATGAACTTTCCAAACTGTCATTAAAAC  586
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCAGATCACAAGCACTACCTGAATGAACTTTCCAAACTGTCATTAAAAC  596

seq1  TTAAGCCAACTCTGAAATGTATTCATGGCAGGTGACACAGACCTGATGTT  636
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAAGCCAACTCTGAAATGTATTCATGGCAGGTGACACAGACCTGATGTT  646

seq1  CTTACAGTCATTAATTCAGCAATGCATTTTGAAAGAAACCCTGTATTCCA  686
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTACAGTCATTAATTCAGCAATGCATTTTGAAAGAAACCCTGTATTCCA  696

seq1  GAGAAAGCTGCTTAACGCAGGCTGTGGTCTGCAGTCAGTGTGTGTTGGAT  736
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGAAAGCTGCTTAACGCAGGCTGTGGTCTGCAGTCAGTGTGTGTTGGAT  746

seq1  CATCCTATCTGTCACCAGTGATCAATCGAAAAAATACATCAAGTGTTCAT  786
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATCCTATCTGTCACCAGTGATCAATCGAAAAAATACATCAAGTGTTCAT  796

seq1  TCACTCCCAAATAGCAGAGGAACAAATGAAGTTTGCAATCTACCTTTTAC  836
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCACTCCCAAATAGCAGAGGAACAAATGAAGTTTGCAATCTACCTTTTAC  846

seq1  CCGGCCAGGTTTGGGTGGAGAAATAGGTTTCTCAATTAGGCGTTGTTTTT  886
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCGGCCAGGTTTGGGTGGAGAAATAGGTTTCTCAATTAGGCGTTGTTTTT  896

seq1  TGATGCTGATTTCAGAGCCAAGAAATTAATATTCAAGAATTTTCATTCGC  936
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGATGCTGATTTCAGAGCCAAGAAATTAATATTCAAGAATTTTCATTCGC  946

seq1  AGAAATTTGTCACTTCAATGTGAGATCAAAGTACTAGAACAAAATGAAAA  986
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAATTTGTCACTTCAATGTGAGATCAAAGTACTAGAACAAAATGAAAA  996

seq1  TGGTTCATGTAGAAATGGGGTGGATAGTGACTTGGCACACTAAGGGCTAA  1036
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGTTCATGTAGAAATGGGGTGGATAGTGACTTGGCACACTAAGGGCTAA  1046

seq1  CTGCCAGCAGTCATTCTTTGAGAACATCAAGATTTGGAATTC  1078
      ||||||||||||||||||||||||||||||||||||||||||
seq2  CTGCCAGCAGTCATTCTTTGAGAACATCAAGATTTGGAATTC  1088