BAC Information

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BAC

Clone NameB6Ng01-256L17
Chromosome5 (Build37)
Map Location 125,558,392 - 125,734,081
singlet/doubletdoublet
Overlap geneNcor2
Upstream geneOgfod2, Arl6ip4, Pitpnm2, Mphosph9, 2810006K23Rik, Cdk2ap1, Sbno1, Setd8, BC003324, LOC606492, 6330548G22Rik, 2900002H16Rik, Rpl32-ps5c, Tmed2, Ddx55, Eif2b1, Gtf2h3, 4432405B04Rik, Atp6v0a2, Atp6v0a2, Dnahc10, Ccdc92, Zfp664, 3110032G18Rik
Downstream geneScarb1, Ubc, Dhx37, Bri3bp, Aacs, Tmem132b, EG231736, LOC100039178, LOC665760
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-256L17.bB6Ng01-256L17.g
ACCGA062616GA062617
length6281,176
definitionB6Ng01-256L17.b B6Ng01-256L17.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(125,733,454 - 125,734,081)(125,558,392 - 125,559,535)
sequence
gaattccagcctcccaggagacctgcttacagataaagaaagcaaaaccc
tttagccagttttggccaaagggaattgtataatcatcatgtcatgtgac
taaaaaattaagtccatactttcaggtaaggcttgatccaggcgctcaaa
acattttccaggaactggggaggagacagcccgatcaataaagctcttgc
tatgcacgaataggccttgagttcagtagccagagtctacataagaagcc
aggagtggcaacacatgtggggtgcggggcagagacagaagggtccgtgg
gactcacaagcatggagacaatcagtgagagacaccgcctcaaaagataa
ggtgaaaatagcacatgatggcgcatgcctttaatctcagcactggggag
gcagaggcaggtggatctctgtgggttcaaggccagtctggtctacaaag
caagttccagaaagcatcagatctttagcagggagggaggtccatgggga
gtcccccagtccttatctagcctcttggctttgagctgtgtgacctttgg
tggatggagcaacctctctggtcctccttttctcaccagtgtgtgtgtgt
gtgtgtgtgtgtgtgtgtgtgtggatca
gaattcaggttctcttgctcacatagcaggcactttactaactttcaggg
cattgttactggggtgcctcgcctgtctctgcagacttgacctcccgatc
tgcactttgcgtaagtgggccagaaaacgcctgttctgtgggacagcagt
ccctggccatgatgcttcaactcaattcagagagaaagtgaacaacacat
aatctctccccacctcccaaaggccacacccctgaattcctcgcttctgt
gtgttgcctgcattttcttaacatcttccaagatcagccagcttttgcta
aaggtgagcagtgatgctgcaggctgcaggctgtgcagtagtggctctgt
gccaataaagctttatttacacagtaggcagagagcagaacttcaagtcg
ccagtggctggcactctaggctcactctagacaccaaggcatgatgacat
agacgtggagagtgctggccacatctccctgcacgtatccactagtgaag
gggcagtcaggaaagcttagtagaactccccagattgtcctgagcagtct
ttactttgaaaatcggctaccacttttgtgtatgggtattctctgctccg
tgtgtgtacttgataccattgcaaacagaggaggacactggatcccctcg
gactggagttaccgatggttatgagccaccatgtgggtgctgagaatcaa
gccaatgctcttttatagctgagctatccctccagctctgacatgtggcc
ttctaacagtaaggactatggactggccaactctgaaccggggacatcct
agctaagacagaagtggctgctgttcccgcctctgcgaacaccctcagca
ggtcagaggctaaagagggatccctaacagtagaactatatgacaccaat
catcaaggatactgaccactcagcaagtgtccctcagtgcagggacctga
tcctcaaagccaagcagccacacactacattcttacctgggctcttggcc
acggcggccgaatagcttccgccttcaccaagcttctttggtaaattttt
caattcttctgggtcaggtagtaattaggagggaacaccacctcagcgac
cggtcttggaagagaatgaagagaagactctgaggggggtggtaccgggg
tgtaaccggggggtacacgggggtgt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr5_125733454_125734081
seq2: B6Ng01-256L17.b_45_672 (reverse)

seq1  TGATCCACACACACACACACACACACACACACACACACACTGGTGAGAAA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGATCCACACACACACACACACACACACACACACACACACTGGTGAGAAA  50

seq1  AGGAGGACCAGAGAGGTTGCTCCATCCACCAAAGGTCACACAGCTCAAAG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGAGGACCAGAGAGGTTGCTCCATCCACCAAAGGTCACACAGCTCAAAG  100

seq1  CCAAGAGGCTAGATAAGGACTGGGGGACTCCCCATGGACCTCCCTCCCTG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAAGAGGCTAGATAAGGACTGGGGGACTCCCCATGGACCTCCCTCCCTG  150

seq1  CTAAAGATCTGATGCTTTCTGGAACTTGCTTTGTAGACCAGACTGGCCTT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAAAGATCTGATGCTTTCTGGAACTTGCTTTGTAGACCAGACTGGCCTT  200

seq1  GAACCCACAGAGATCCACCTGCCTCTGCCTCCCCAGTGCTGAGATTAAAG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAACCCACAGAGATCCACCTGCCTCTGCCTCCCCAGTGCTGAGATTAAAG  250

seq1  GCATGCGCCATCATGTGCTATTTTCACCTTATCTTTTGAGGCGGTGTCTC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCATGCGCCATCATGTGCTATTTTCACCTTATCTTTTGAGGCGGTGTCTC  300

seq1  TCACTGATTGTCTCCATGCTTGTGAGTCCCACGGACCCTTCTGTCTCTGC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCACTGATTGTCTCCATGCTTGTGAGTCCCACGGACCCTTCTGTCTCTGC  350

seq1  CCCGCACCCCACATGTGTTGCCACTCCTGGCTTCTTATGTAGACTCTGGC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCGCACCCCACATGTGTTGCCACTCCTGGCTTCTTATGTAGACTCTGGC  400

seq1  TACTGAACTCAAGGCCTATTCGTGCATAGCAAGAGCTTTATTGATCGGGC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACTGAACTCAAGGCCTATTCGTGCATAGCAAGAGCTTTATTGATCGGGC  450

seq1  TGTCTCCTCCCCAGTTCCTGGAAAATGTTTTGAGCGCCTGGATCAAGCCT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTCTCCTCCCCAGTTCCTGGAAAATGTTTTGAGCGCCTGGATCAAGCCT  500

seq1  TACCTGAAAGTATGGACTTAATTTTTTAGTCACATGACATGATGATTATA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACCTGAAAGTATGGACTTAATTTTTTAGTCACATGACATGATGATTATA  550

seq1  CAATTCCCTTTGGCCAAAACTGGCTAAAGGGTTTTGCTTTCTTTATCTGT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAATTCCCTTTGGCCAAAACTGGCTAAAGGGTTTTGCTTTCTTTATCTGT  600

seq1  AAGCAGGTCTCCTGGGAGGCTGGAATTC  628
      ||||||||||||||||||||||||||||
seq2  AAGCAGGTCTCCTGGGAGGCTGGAATTC  628

seq1: chr5_125558392_125559535
seq2: B6Ng01-256L17.g_66_1241

seq1  GAATTCAGGTTCTCTTGCTCACATAGCAGGCACTTTACTAACTTTCAGGG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAGGTTCTCTTGCTCACATAGCAGGCACTTTACTAACTTTCAGGG  50

seq1  CATTGTTACTGGGGTGCCTCGCCTGTCTCTGCAGACTTGACCTCCCGATC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTGTTACTGGGGTGCCTCGCCTGTCTCTGCAGACTTGACCTCCCGATC  100

seq1  TGCACTTTGCGTAAGTGGGCCAGAAAACGCCTGTTCTGTGGGACAGCAGT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCACTTTGCGTAAGTGGGCCAGAAAACGCCTGTTCTGTGGGACAGCAGT  150

seq1  CCCTGGCCATGATGCTTCAACTCAATTCAGAGAGAAAGTGAACAACACAT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCTGGCCATGATGCTTCAACTCAATTCAGAGAGAAAGTGAACAACACAT  200

seq1  AATCTCTCCCCACCTCCCAAAGGCCACACCCCTGAATTCCTCGCTTCTGT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATCTCTCCCCACCTCCCAAAGGCCACACCCCTGAATTCCTCGCTTCTGT  250

seq1  GTGTTGCCTGCATTTTCTTAACATCTTCCAAGATCAGCCAGCTTTTGCTA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTTGCCTGCATTTTCTTAACATCTTCCAAGATCAGCCAGCTTTTGCTA  300

seq1  AAGGTGAGCAGTGATGCTGCAGGCTGCAGGCTGTGCAGTAGTGGCTCTGT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGTGAGCAGTGATGCTGCAGGCTGCAGGCTGTGCAGTAGTGGCTCTGT  350

seq1  GCCAATAAAGCTTTATTTACACAGTAGGCAGAGAGCAGAACTTCAAGTCG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCAATAAAGCTTTATTTACACAGTAGGCAGAGAGCAGAACTTCAAGTCG  400

seq1  CCAGTGGCTGGCACTCTAGGCTCACTCTAGACACCAAGGCATGATGACAT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGTGGCTGGCACTCTAGGCTCACTCTAGACACCAAGGCATGATGACAT  450

seq1  AGACGTGGAGAGTGCTGGCCACATCTCCCTGCACGTATCCACTAGTGAAG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGACGTGGAGAGTGCTGGCCACATCTCCCTGCACGTATCCACTAGTGAAG  500

seq1  GGGCAGTCAGGAAAGCTTAGTAGAACTCCCCAGATTGTCCTGAGCAGTCT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGCAGTCAGGAAAGCTTAGTAGAACTCCCCAGATTGTCCTGAGCAGTCT  550

seq1  TTACTTTGAAAATCGGCTACCACTTTTGTGTATGGGTATTCTCTGCTCCG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTACTTTGAAAATCGGCTACCACTTTTGTGTATGGGTATTCTCTGCTCCG  600

seq1  TGTGTGTACTTGATACCATTGCAAACAGAGGAGGACACTGGATCCCCTCG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGTGTACTTGATACCATTGCAAACAGAGGAGGACACTGGATCCCCTCG  650

seq1  GACTGGAGTTACCGATGGTTATGAGCCACCATGTGGGTGCTGAGAATCAA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACTGGAGTTACCGATGGTTATGAGCCACCATGTGGGTGCTGAGAATCAA  700

seq1  GCCAATGCTCTTTTATAGCTGAGCTATCCCTCCAGCTCTGACATGTGGCC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCAATGCTCTTTTATAGCTGAGCTATCCCTCCAGCTCTGACATGTGGCC  750

seq1  TTCTAACAGTAAGGACTATGGACTGGCCAACTCTGAACCGGGGACATCCT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTAACAGTAAGGACTATGGACTGGCCAACTCTGAACCGGGGACATCCT  800

seq1  AGCTAAGACAGAAGTGGCTGCTGTTCCCGCCTCTGCGAACACCCTCAGCA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCTAAGACAGAAGTGGCTGCTGTTCCCGCCTCTGCGAACACCCTCAGCA  850

seq1  GGTCAGAGGCTAAAGAGGGATCCCTAACAGTAGAACTATATGACACCAAT  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTCAGAGGCTAAAGAGGGATCCCTAACAGTAGAACTATATGACACCAAT  900

seq1  CATCAAGGATACTGACCACCCAGCAAGTGTCCCTCAAGTGCAGGGACCTG  950
      ||||||||||||||||||| ||||||||||||||| ||||||||||||||
seq2  CATCAAGGATACTGACCACTCAGCAAGTGTCCCTC-AGTGCAGGGACCTG  949

seq1  ATCCTCAAAGCCAAGCAGCCACACACTACA-TCTTACCT-GGCTCTT-GC  997
      |||||||||||||||||||||||||||||| |||||||| ||||||| ||
seq2  ATCCTCAAAGCCAAGCAGCCACACACTACATTCTTACCTGGGCTCTTGGC  999

seq1  CACGGC-GCCG-ATAGC-TCCGCC-TCACCAAGC-TCTT--GTAA--TTT  1038
      |||||| |||| ||||| |||||| ||||||||| ||||  ||||  |||
seq2  CACGGCGGCCGAATAGCTTCCGCCTTCACCAAGCTTCTTTGGTAAATTTT  1049

seq1  TC-ATTCTTCTTGGTCAGGTAGTAAT----AGAGGACAC--ACTCAGCGA  1081
      || |||||||| ||||||||||||||    || | ||||   ||||||||
seq2  TCAATTCTTCTGGGTCAGGTAGTAATTAGGAGGGAACACCACCTCAGCGA  1099

seq1  CC-GTCT---GAGAGACAG-AGAGAAGACTCTGAGGGGTGT----ACGGG  1122
      || ||||    |||||  | |||||||||||||||||| ||     ||||
seq2  CCGGTCTTGGAAGAGAATGAAGAGAAGACTCTGAGGGGGGTGGTACCGGG  1149

seq1  GTGTA--CGGGGTGTAC---GGGGTGT  1144
      |||||  ||||| ||||   |||||||
seq2  GTGTAACCGGGGGGTACACGGGGGTGT  1176