BAC Information

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BAC

Clone NameB6Ng01-258I13
Chromosome5 (Build37)
Map Location 16,815,492 - 16,960,480
singlet/doubletdoublet
Overlap geneLOC668142, LOC100041749, LOC100041832
Upstream geneCacna2d1, LOC668121, Hgf, EG668131, LOC626390
Downstream geneSpeer4f, EG630927, Sema3c, Cd36, Gnat3, Gnai1, LOC100041818
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-258I13.bB6Ng01-258I13.g
ACCGA063948GA063949
length1,1971,174
definitionB6Ng01-258I13.b B6Ng01-258I13.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(16,815,492 - 16,816,696)(16,959,312 - 16,960,480)
sequence
gaattctttatatattttgaatattagccctctctctgatgtgggtttag
tgaaaaatttccccaatctgcaggttattgatttgacttattgacactgt
cttttgctgtacagaggcttttcagtttcatgagatcccatttatcactt
cttgatcttagagtctgagccattagcatccttcttaggaaatttcactt
tgtgccaatgaatttttggctctttctcactttctcttctatgagattca
gtgtgtctggttattaagtttaacttaaaaacctaagacataaatgacaa
aagaggaagaacgggagacagagggaggcaaagatttctatttcttctgt
agaactgatatttcagtttgaaaatcttggtagttattaagtgattagga
gagagattctaggtcagaatttgtcatattagttttttgaccaaaaaaac
ctactatcaaatataataggcttcatgtgtccctagttgcccagatcatt
tcttaaatattgtcatcacaaggagaaagagctaaacctatcatgtaaag
aggtatttatggttgggttctaataaagctttattaaaccatacaggggg
gcaacttcaccctaggcttcttatataacctaaaattctaaagtttatag
caatttttatagagaaaatacatagaactttcctctcagaaggaaattgt
ctatatccctgcttttccaaatgatcattggtgacatcagcagttgaaat
agagaagaatgaagagatttaaaatttctattaaatttttattatttcac
atgtaaataaccacatggtattattgaccatacactatgcactgtacttt
tgaaatgtttttaaaatctgagtgtagatccttaaatttaactcatttcc
tgctttctagcataagacatctttttcatgctttgaagattgtcaaagtg
caaaatttggaagcactcactttttttttttttaaagattgcttactcca
aacacaatgggcctgagcacattatgaacctcacagagatgcacagcatg
caaagaactggctagtttggaggctgattggggcttcaggaattctttac
atggatttatgaagctactatctttattgactttcagaaccaaagaatct
ggatctttcaattacttaaggtccgtcgaatgaggattcagagctat

gaattccctaaaagaaagaaagaaaaaaagaagtgttttcaatatctgtt
ttggtctgaatcatatttctttctcagtttgacatcagattgttattcaa
gtattccaatagtcatagaagaatgagaaacaatatagaaaaaaataaat
ctgatactatgactagtaacttttttttcagttgaaagaaaacttcataa
gaaataaaagggaaaactagagggattggaaggatgtgttgggcatgtac
cttattgctttttgctatgtggtacttggtgtttgataacaattatcctt
agactgaagactgtaattttagatcacacgcagaggatgtgaatcagttt
cctgatacaaacatataataaaatcaaacaatgacgatagttaaacatgg
tattgcccgtcagattgtttattgacagacttcctactgcgtcttcttga
aaggtaaaggttcactggaactcttcaacagtctagatatatttatgttt
taaaatagccttccaaaaccataatacggcatgttttcataactcatggg
caatgattgagattaatatgtaatctgttgaggaagattgctgttctcac
aaagatttgccaaaagctaaaacttaactaaaaagaaccactgttatcct
cctggcattatttttgatataaagaattacaataaaggtgtttgaaatgt
attgtaggcaatggcacataccagttagagtgccagcaatggaaacacat
atcaaacacttttaataaaccaggctaagatagaagccaaaaattattgt
ttcattttctattgctaggcatattcccaaatctgatggaaagacattca
atttcagtattcaacagaagttcaagtttgaacaagttcttaaaatggat
attataatccagtctgttttagtcaggagtgtgctgagaatctggaagac
tttttcataggcaaaataatcctgttcaatttagaagaagactttccaag
tatttgccatgttataaagttatgaggttgtagtgatattacattatgta
taacacaacaaaactccttcaaaataaattcccttaggaattactaccat
aatagtgataatatgctcaggtaagcatgacagaaaaaaggaaagaatat
taattaggatatctgtgctaaata
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr5_16815492_16816696
seq2: B6Ng01-258I13.b_45_1241

seq1  GAATTCTTTATATATTTTGAATATTAGCCCTCTCTCTGATGTGGGTTTAG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTTTATATATTTTGAATATTAGCCCTCTCTCTGATGTGGGTTTAG  50

seq1  TGAAAAATTTCCCCAATCTGCAGGTTATTGATTTGACTTATTGACACTGT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAAAAATTTCCCCAATCTGCAGGTTATTGATTTGACTTATTGACACTGT  100

seq1  CTTTTGCTGTACAGAGGCTTTTCAGTTTCATGAGATCCCATTTATCACTT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTTGCTGTACAGAGGCTTTTCAGTTTCATGAGATCCCATTTATCACTT  150

seq1  CTTGATCTTAGAGTCTGAGCCATTAGCATCCTTCTTAGGAAATTTCACTT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTGATCTTAGAGTCTGAGCCATTAGCATCCTTCTTAGGAAATTTCACTT  200

seq1  TGTGCCAATGAATTTTTGGCTCTTTCTCACTTTCTCTTCTATGAGATTCA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGCCAATGAATTTTTGGCTCTTTCTCACTTTCTCTTCTATGAGATTCA  250

seq1  GTGTGTCTGGTTATTAAGTTTAACTTAAAAACCTAAGACATAAATGACAA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTGTCTGGTTATTAAGTTTAACTTAAAAACCTAAGACATAAATGACAA  300

seq1  AAGAGGAAGAACGGGAGACAGAGGGAGGCAAAGATTTCTATTTCTTCTGT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGAGGAAGAACGGGAGACAGAGGGAGGCAAAGATTTCTATTTCTTCTGT  350

seq1  AGAACTGATATTTCAGTTTGAAAATCTTGGTAGTTATTAAGTGATTAGGA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAACTGATATTTCAGTTTGAAAATCTTGGTAGTTATTAAGTGATTAGGA  400

seq1  GAGAGATTCTAGGTCAGAATTTGTCATATTAGTTTTTTGACCAAAAAAAC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGAGATTCTAGGTCAGAATTTGTCATATTAGTTTTTTGACCAAAAAAAC  450

seq1  CTACTATCAAATATAATAGGCTTCATGTGTCCCTAGTTGCCCAGATCATT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTACTATCAAATATAATAGGCTTCATGTGTCCCTAGTTGCCCAGATCATT  500

seq1  TCTTAAATATTGTCATCACAAGGAGAAAGAGCTAAACCTATCATGTAAAG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTAAATATTGTCATCACAAGGAGAAAGAGCTAAACCTATCATGTAAAG  550

seq1  AGGTATTTATGGTTGGGTTCTAATAAAGCTTTATTAAACCATACAGGGGG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGTATTTATGGTTGGGTTCTAATAAAGCTTTATTAAACCATACAGGGGG  600

seq1  GCAACTTCACCCTAGGCTTCTTATATAACCTAAAATTCTAAAGTTTATAG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAACTTCACCCTAGGCTTCTTATATAACCTAAAATTCTAAAGTTTATAG  650

seq1  CAATTTTTATAGAGAAAATACATAGAACTTTCCTCTCAGAAGGAAATTGT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAATTTTTATAGAGAAAATACATAGAACTTTCCTCTCAGAAGGAAATTGT  700

seq1  CTATATCCCTGCTTTTCCAAATGATCATTGGTGACATCAGCAGTTGAAAT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTATATCCCTGCTTTTCCAAATGATCATTGGTGACATCAGCAGTTGAAAT  750

seq1  AGAGAAGAATGAAGAGATTTAAAATTTCTATTAAATTTTTATTATTTCAC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGAAGAATGAAGAGATTTAAAATTTCTATTAAATTTTTATTATTTCAC  800

seq1  ATGTAAATAACCACATGGTATTATTGACCATACACTATGCACTGTACTTT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTAAATAACCACATGGTATTATTGACCATACACTATGCACTGTACTTT  850

seq1  TGAAATGTTTTTAAAATCTGAGTGTAGATCCTTAAATTTAACTCATTTCC  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAAATGTTTTTAAAATCTGAGTGTAGATCCTTAAATTTAACTCATTTCC  900

seq1  TGCTTTCTAGCATAAAGACATCTTTTTCATGCTTTGAAGATTGTCAAAGT  950
      ||||||||||||| ||||||||||||||||||||||||||||||||||||
seq2  TGCTTTCTAGCAT-AAGACATCTTTTTCATGCTTTGAAGATTGTCAAAGT  949

seq1  GCAAAATTTGGAAAGCACTCACTTTTTTTTTTTTTAAAGATTGCTTACTC  1000
      ||||||||||| ||||||||||||||||||||||||||||||||||||||
seq2  GCAAAATTTGG-AAGCACTCACTTTTTTTTTTTTTAAAGATTGCTTACTC  998

seq1  CAAACACAATGGGCCTGAAGCACA-TATGAA-CTCACAGAGATGGCAACA  1048
      ||||||||||||||||| |||||| |||||| ||||||||||||   |||
seq2  CAAACACAATGGGCCTG-AGCACATTATGAACCTCACAGAGATG--CACA  1045

seq1  GCATGCAAAGACCTGCCTAGGTTGAAGCCAGA-TGGGGCTCAGGGAAATC  1097
      ||||||||||| ||| |||| ||| || | || |||||||   |||| ||
seq2  GCATGCAAAGAACTGGCTAGTTTGGAGGCTGATTGGGGCTTCAGGAATTC  1095

seq1  CTTACCATGATTTATG-AGCAAACATACTTTA-TGACTTTCAAGACACAA  1145
       ||||   |||||||| ||| |  || ||||| |||||||| ||| || |
seq2  TTTACATGGATTTATGAAGCTACTAT-CTTTATTGACTTTC-AGA-ACCA  1142

seq1  AAGATTCTGGATCTTCACATTACTACATGCTCCTGTCAGGATGGAAGGGA  1195
      |||| ||||||||||   ||||||  | | ||| ||| | |||  |||  
seq2  AAGAATCTGGATCTTTCAATTACT-TAAGGTCC-GTC-GAATG--AGGAT  1187

seq1  TCAGAGCTAT  1205
      ||||||||||
seq2  TCAGAGCTAT  1197


seq1: chr5_16959312_16960480
seq2: B6Ng01-258I13.g_72_1245 (reverse)

seq1  TATTTA-CACAGATTAATCCTTAATTAATAATCTTTC--TTTTTCTGTCA  47
      |||||| |||||||  |||| ||||||||| ||||||  |||||||||||
seq2  TATTTAGCACAGAT--ATCC-TAATTAATATTCTTTCCTTTTTTCTGTCA  47

seq1  TGCTTA-CTGAGCATATAATCACTAATATATGTAGTAATTCCTAAAGGAA  96
      |||||| |||||||||| ||||||| |||  |||||||||||||| ||||
seq2  TGCTTACCTGAGCATATTATCACTATTAT-GGTAGTAATTCCTAAGGGAA  96

seq1  TTTATTTTGGAAAGGAGTTTTTGTTGTGTTAATACATAATGTATATTCAC  146
      |||||||||  |||||| |||||||||||| ||||||||||||   ||||
seq2  TTTATTTTG--AAGGAG-TTTTGTTGTGTT-ATACATAATGTAATATCAC  142

seq1  TTACAACCTCATAACTTTAT-ACATGGCAAATACTT-GAAAGTC-TCTTC  193
       ||||||||||||||||||| ||||||||||||||| ||||||| |||||
seq2  -TACAACCTCATAACTTTATAACATGGCAAATACTTGGAAAGTCTTCTTC  191

seq1  TAAAT--GACA-GATTATTTTGCCTATGAAAAAGTCTTCCAGA-TCTCAG  239
      |||||   ||| ||||||||||||||||||||||||||||||| ||||||
seq2  TAAATTGAACAGGATTATTTTGCCTATGAAAAAGTCTTCCAGATTCTCAG  241

seq1  CACACTCCTGACT-AAACAGACTGGATTAT-ATAT-CAATTTAAGAACTT  286
      ||||||||||||| |||||||||||||||| |||| || |||||||||||
seq2  CACACTCCTGACTAAAACAGACTGGATTATAATATCCATTTTAAGAACTT  291

seq1  GTTCAAACTTGAACTTCTGTTGAATACTGAAATTGAATGTCTTTCCATCA  336
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTCAAACTTGAACTTCTGTTGAATACTGAAATTGAATGTCTTTCCATCA  341

seq1  GATTTGGGAATATGCCTAGCAATAGAAAATGAAACAATAATTTTTGGCTT  386
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATTTGGGAATATGCCTAGCAATAGAAAATGAAACAATAATTTTTGGCTT  391

seq1  CTATCTTAGCCTGGTTTATTAAAAGTGTTTGATATGTGTTTCCATTGCTG  436
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTATCTTAGCCTGGTTTATTAAAAGTGTTTGATATGTGTTTCCATTGCTG  441

seq1  GCACTCTAACTGGTATGTGCCATTGCCTACAATACATTTCAAACACCTTT  486
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCACTCTAACTGGTATGTGCCATTGCCTACAATACATTTCAAACACCTTT  491

seq1  ATTGTAATTCTTTATATCAAAAATAATGCCAGGAGGATAACAGTGGTTCT  536
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTGTAATTCTTTATATCAAAAATAATGCCAGGAGGATAACAGTGGTTCT  541

seq1  TTTTAGTTAAGTTTTAGCTTTTGGCAAATCTTTGTGAGAACAGCAATCTT  586
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTAGTTAAGTTTTAGCTTTTGGCAAATCTTTGTGAGAACAGCAATCTT  591

seq1  CCTCAACAGATTACATATTAATCTCAATCATTGCCCATGAGTTATGAAAA  636
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTCAACAGATTACATATTAATCTCAATCATTGCCCATGAGTTATGAAAA  641

seq1  CATGCCGTATTATGGTTTTGGAAGGCTATTTTAAAACATAAATATATCTA  686
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGCCGTATTATGGTTTTGGAAGGCTATTTTAAAACATAAATATATCTA  691

seq1  GACTGTTGAAGAGTTCCAGTGAACCTTTACCTTTCAAGAAGACGCAGTAG  736
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACTGTTGAAGAGTTCCAGTGAACCTTTACCTTTCAAGAAGACGCAGTAG  741

seq1  GAAGTCTGTCAATAAACAATCTGACGGGCAATACCATGTTTAACTATCGT  786
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGTCTGTCAATAAACAATCTGACGGGCAATACCATGTTTAACTATCGT  791

seq1  CATTGTTTGATTTTATTATATGTTTGTATCAGGAAACTGATTCACATCCT  836
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTGTTTGATTTTATTATATGTTTGTATCAGGAAACTGATTCACATCCT  841

seq1  CTGCGTGTGATCTAAAATTACAGTCTTCAGTCTAAGGATAATTGTTATCA  886
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGCGTGTGATCTAAAATTACAGTCTTCAGTCTAAGGATAATTGTTATCA  891

seq1  AACACCAAGTACCACATAGCAAAAAGCAATAAGGTACATGCCCAACACAT  936
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACACCAAGTACCACATAGCAAAAAGCAATAAGGTACATGCCCAACACAT  941

seq1  CCTTCCAATCCCTCTAGTTTTCCCTTTTATTTCTTATGAAGTTTTCTTTC  986
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTCCAATCCCTCTAGTTTTCCCTTTTATTTCTTATGAAGTTTTCTTTC  991

seq1  AACTGAAAAAAAAGTTACTAGTCATAGTATCAGATTTATTTTTTTCTATA  1036
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTGAAAAAAAAGTTACTAGTCATAGTATCAGATTTATTTTTTTCTATA  1041

seq1  TTGTTTCTCATTCTTCTATGACTATTGGAATACTTGAATAACAATCTGAT  1086
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTTTCTCATTCTTCTATGACTATTGGAATACTTGAATAACAATCTGAT  1091

seq1  GTCAAACTGAGAAAGAAATATGATTCAGACCAAAACAGATATTGAAAACA  1136
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCAAACTGAGAAAGAAATATGATTCAGACCAAAACAGATATTGAAAACA  1141

seq1  CTTCTTTTTTTCTTTCTTTCTTTTAGGGAATTC  1169
      |||||||||||||||||||||||||||||||||
seq2  CTTCTTTTTTTCTTTCTTTCTTTTAGGGAATTC  1174


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