BAC Information

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BAC

Clone NameB6Ng01-260J24
Chromosome5 (Build37)
Map Location 107,535,418 - 107,668,996
singlet/doubletdoublet
Overlap geneTgfbr3
Upstream geneLOC546882, LOC671295, 4930458A03Rik, Barhl2, EG666892, LOC100042389, Zfp644, LOC100042400, EG666922, Hfm1, Cdc7
Downstream geneLOC666518, Brdt, LOC666535, Abhd7, 4921521K07Rik, LOC72342, 1700028K03Rik, Glmn, AW060207, Gfi1, LOC100042473, Evi5, 1700013N18Rik, Rpl5, 2900024C23Rik, LOC675566, Mtf2, Tmed5, Ccdc18, EG633606, LOC666614
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-260J24.bB6Ng01-260J24.g
ACCGA065500GA065501
length3531,085
definitionB6Ng01-260J24.b B6Ng01-260J24.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(107,668,644 - 107,668,996)(107,535,418 - 107,536,514)
sequence
ccaagtgctgtaattacaaatgtgagccacatactcagctaattttatta
tatatatgtttttcaaatgaaggtgggtcacaaagacagccaagtggggt
ttatgttcacaacatcccgtagcttctatgggccccagtcagggtgattt
gattttactcaaaagaagaggcttgatttttaaagaagtcttgtgtgtgt
ttgtatgtgtgtgtgtgtatagatatatgcatgtttatgggtatatatgc
attggaaggttcactgtagatggctgcgcgtgttctaccactctctacat
tgtatttttagacaggcctgtccaatgagcccagagctttcaggttgggt
tag
gaattctgggcacagcctggcatccctgccccctcccttcctctctgctc
tcttgggtccttgttctttcccctcctttctcttcatcctcatctgccct
gttccagcaggtgccatcaaagctgtgtcagaccaaggggagggtttagt
gatgaccagatatgacataaattaataattgatacatatctttattatgc
acagataaaagaattaaaactgtggttatcaaaactatacctctaagcag
gttcacaaagaccatggaacagagggaaggttacagcaggggtgttcaaa
ctggccacagggatttcccggggtatgcttttaccctcgtagatgaaaaa
caggaacaaaatcaggctcactcaggaaaaaccagaatagagtattgcat
ttggaaactgataatagtccttcctagaaaaatatctgtcagtttaatga
acgaacccccagataaaacaaacaggataaaaaaaaaaagtttgtataca
cgactcacccgacaaatgtgctctgttaatacaaccagcagtacgctcat
cattcaaaccatgaggtagttacagtacaaaaagacaggcacgcgcctgc
gcaccccacacactcaggcaagcctgcggagaacacacgcaggaaatgga
tttacaatctcattaccagacaagcaaaaggccattttgtgtttaggaaa
aaattgctacatgaccaactcaggcagaagaaagatctccgacctttgaa
aatgcagcggtaactccacgtgaatagctgtagtgccttgcacagacagt
cctgccttagcctggggcagtccagcatggtttcagcatcaacaagacaa
aatggcccctgtgggccactggtgtggccctgcagacacaacacaagact
ttgcaggtggaaatgggttcagccagactataacaacagtcttaaggaaa
cttgtagaatatgtatgaaagtaggcttatacattgtataaatctgtgag
ggtgagcagtcagaaaacactgtacagagctgggaggagacacccagctt
agctcagatactaaagacatcatttcaaatatggg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr5_107668644_107668996
seq2: B6Ng01-260J24.b_52_404 (reverse)

seq1  CTAACCCAACCTGAAAGCTCTGGGCTCACTGGACAGGCCTGTCTAAATAT  50
      |||||||||||||||||||||||||||| |||||||||||||||||| ||
seq2  CTAACCCAACCTGAAAGCTCTGGGCTCATTGGACAGGCCTGTCTAAAAAT  50

seq1  ACAATGTAGAGAGTGGTAGAACAAGAGCGGCCATCTACCTCTGGCCTTCC  100
      ||||||||||||||||||||||| | || |||||||||      ||||||
seq2  ACAATGTAGAGAGTGGTAGAACACGCGCAGCCATCTACAGTGAACCTTCC  100

seq1  AATGCATATATACCCATAAACATGCATATATCTATACACACACACACATA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGCATATATACCCATAAACATGCATATATCTATACACACACACACATA  150

seq1  CAAACACACACAAGACTTCTTTAAAAATCAAGCCTCTTCTTTTGAGTAAA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAACACACACAAGACTTCTTTAAAAATCAAGCCTCTTCTTTTGAGTAAA  200

seq1  ATCAAATCACCCTGACTGGGGCCCATAGAAGCTACGGGATGTTGTGAACA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCAAATCACCCTGACTGGGGCCCATAGAAGCTACGGGATGTTGTGAACA  250

seq1  TAAACCCCACTTGGCTGTCTTTGTGACCCACCTTCATTTGAAAAACATAT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAACCCCACTTGGCTGTCTTTGTGACCCACCTTCATTTGAAAAACATAT  300

seq1  ATATAATAAAATTAGCTGAGTATGTGGCTCACATTTGTAATTACAGCACT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATAATAAAATTAGCTGAGTATGTGGCTCACATTTGTAATTACAGCACT  350

seq1  TGG  353
      |||
seq2  TGG  353

seq1: chr5_107535418_107536514
seq2: B6Ng01-260J24.g_63_1147

seq1  GAATTCTGGGCACAGCCTGGCATCCCTGCCCCCTCCCTTCCTCTCTGCTC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTGGGCACAGCCTGGCATCCCTGCCCCCTCCCTTCCTCTCTGCTC  50

seq1  TCTTGGGTCCTTGTTCTTTCCCCTCCTTTCTCTTCATCCTCATCTGCCCT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTGGGTCCTTGTTCTTTCCCCTCCTTTCTCTTCATCCTCATCTGCCCT  100

seq1  GTTCCAGCAGGTGCCATCAAAGCTGTGTCAGACCAAGGGGAGGGTTTAGT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTCCAGCAGGTGCCATCAAAGCTGTGTCAGACCAAGGGGAGGGTTTAGT  150

seq1  GATGACCAGATATGACATAAATTAATAATTGATACATATCTTTATTATGC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATGACCAGATATGACATAAATTAATAATTGATACATATCTTTATTATGC  200

seq1  ACAGATAAAAGAATTAAAACTGTGGTTATCAAAACTATACCTCTAAGCAG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGATAAAAGAATTAAAACTGTGGTTATCAAAACTATACCTCTAAGCAG  250

seq1  GTTCACAAAGACCATGGAACAGAGGGAAGGTTACAGCAGGGGTGTTCAAA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTCACAAAGACCATGGAACAGAGGGAAGGTTACAGCAGGGGTGTTCAAA  300

seq1  CTGGCCACAGGGATTTCCCGGGGTATGCTTTTACCCTCGTAGATGAAAAA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGCCACAGGGATTTCCCGGGGTATGCTTTTACCCTCGTAGATGAAAAA  350

seq1  CAGGAACAAAATCAGGCTCACTCAGGAAAAACCAGAATAGAGTATTGCAT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGAACAAAATCAGGCTCACTCAGGAAAAACCAGAATAGAGTATTGCAT  400

seq1  TTGGAAACTGATAATAGTCCTTCCTAGAAAAATATCTGTCAGTTTAATGA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGGAAACTGATAATAGTCCTTCCTAGAAAAATATCTGTCAGTTTAATGA  450

seq1  ACGAACCCCCAGATAAAACAAACAGGATAAAAAAAAAAAGTTTGTATACA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACGAACCCCCAGATAAAACAAACAGGATAAAAAAAAAAAGTTTGTATACA  500

seq1  CGACTCACCCGACAAATGTGCTCTGTTAATACAACCAGCAGTACGCTCAT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGACTCACCCGACAAATGTGCTCTGTTAATACAACCAGCAGTACGCTCAT  550

seq1  CATTCAAACCATGAGGTAGTTACAGTACAAAAAGACAGGCACGCGCCTGC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTCAAACCATGAGGTAGTTACAGTACAAAAAGACAGGCACGCGCCTGC  600

seq1  GCACCCCACACACTCAGGCAAGCCTGCGGAGAACACACGCAGGAAATGGA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCACCCCACACACTCAGGCAAGCCTGCGGAGAACACACGCAGGAAATGGA  650

seq1  TTTACAATCTCATTACCAGACAAGCAAAAGGCCATTTTGTGTTTAGGAAA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTACAATCTCATTACCAGACAAGCAAAAGGCCATTTTGTGTTTAGGAAA  700

seq1  AAATTGCTACATGACCAACTCAGGCAGAAGAAAGATCTCCGACCTTTGAA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATTGCTACATGACCAACTCAGGCAGAAGAAAGATCTCCGACCTTTGAA  750

seq1  AATGCAGCGGTAACTCCACGTGAATAGCTGTAGTGCCTTGCACAGACAGT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGCAGCGGTAACTCCACGTGAATAGCTGTAGTGCCTTGCACAGACAGT  800

seq1  CCTGCCTTAGCCTGGGGCAGTCCAGCATGGTTTCAGCATCAACAAGACAA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGCCTTAGCCTGGGGCAGTCCAGCATGGTTTCAGCATCAACAAGACAA  850

seq1  AATGGCCCCTGT-GGCCACTGGTGTGG-CCTGCAGACACAACACAAGACT  898
      |||||||||||| |||||||||||||| ||||||||||||||||||||||
seq2  AATGGCCCCTGTGGGCCACTGGTGTGGCCCTGCAGACACAACACAAGACT  900

seq1  TTGCAGGTGGAAATGGGTTCAGCCAGACTATAACAACAGTCTTAAGGAAA  948
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGCAGGTGGAAATGGGTTCAGCCAGACTATAACAACAGTCTTAAGGAAA  950

seq1  CTTGTAGAATATGTTATGAAAGTAAGGCTTATACATTGTATTAAATCTGT  998
      ||||||||||||| ||||||||| |||||||||||||||| |||||||||
seq2  CTTGTAGAATATG-TATGAAAGT-AGGCTTATACATTGTA-TAAATCTGT  997

seq1  GAAGGGTGAAGCAGTCAG-AAACACTGTAACAAGAGCTGGGAGGAGACAC  1047
      | |||||| ||||||||| ||||||||||   ||||||||||||||||||
seq2  G-AGGGTG-AGCAGTCAGAAAACACTGTA--CAGAGCTGGGAGGAGACAC  1043

seq1  CCAAGCTTTAGCTTCAGGAATACTAAAGGACATTCATTTTCCAATATGGG  1097
      || ||| ||||| ||||  |||||||| |||| ||| |||| ||||||||
seq2  CC-AGC-TTAGC-TCAG--ATACTAAA-GACA-TCA-TTTCAAATATGGG  1085